Wall clock time and date at job start Tue Mar 31 2020 19:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99555 * 2 1 4 4 C 1.53001 * 109.46835 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47382 * 65.00184 * 4 3 2 6 6 C 1.37103 * 119.99654 * 275.98713 * 5 4 3 7 7 H 1.07999 * 119.99763 * 36.86156 * 6 5 4 8 8 C 1.38948 * 119.99737 * 216.85997 * 6 5 4 9 9 N 1.31410 * 120.00065 * 5.03404 * 8 6 5 10 10 Si 1.86798 * 119.99869 * 185.03104 * 8 6 5 11 11 H 1.48507 * 109.47151 * 90.00467 * 10 8 6 12 12 H 1.48506 * 109.47246 * 209.99910 * 10 8 6 13 13 H 1.48492 * 109.47254 * 330.00172 * 10 8 6 14 14 C 1.34776 * 120.00378 * 95.98208 * 5 4 3 15 15 O 1.21284 * 120.00182 * 185.13337 * 14 5 4 16 16 C 1.50709 * 119.99630 * 5.14142 * 14 5 4 17 17 H 1.09000 * 109.55474 * 307.99170 * 16 14 5 18 18 C 1.53253 * 109.55940 * 68.21220 * 16 14 5 19 19 C 1.53253 * 108.95384 * 65.35968 * 18 16 14 20 20 O 1.43364 * 108.79537 * 54.46675 * 19 18 16 21 21 C 1.42971 * 113.83730 * 302.10563 * 20 19 18 22 22 H 1.09008 * 109.46986 * 298.79320 * 21 20 19 23 23 C 1.50703 * 109.47385 * 178.80006 * 21 20 19 24 24 C 1.38235 * 119.99537 * 239.72684 * 23 21 20 25 25 C 1.38238 * 119.99604 * 179.78587 * 24 23 21 26 26 C 1.38235 * 119.99895 * 0.43924 * 25 24 23 27 27 C 1.38231 * 120.00019 * 359.80943 * 26 25 24 28 28 C 1.38232 * 120.00261 * 359.97438 * 27 26 25 29 29 O 1.42965 * 109.47236 * 58.79541 * 21 20 19 30 30 H 1.09000 * 109.46782 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46847 * 299.99449 * 1 2 3 32 32 H 1.08991 * 109.47275 * 59.99821 * 1 2 3 33 33 H 1.09003 * 109.47232 * 60.00393 * 3 2 1 34 34 H 1.08998 * 109.47415 * 300.00030 * 3 2 1 35 35 H 1.08999 * 109.47238 * 304.99608 * 4 3 2 36 36 H 1.09010 * 109.47133 * 185.00208 * 4 3 2 37 37 H 0.96997 * 120.00074 * 184.64632 * 9 8 6 38 38 H 1.08998 * 109.57172 * 185.23485 * 18 16 14 39 39 H 1.09000 * 109.57536 * 305.48421 * 18 16 14 40 40 H 1.09004 * 109.56267 * 174.42731 * 19 18 16 41 41 H 1.09003 * 109.55808 * 294.74441 * 19 18 16 42 42 H 1.07996 * 120.00152 * 359.97438 * 24 23 21 43 43 H 1.07997 * 120.00020 * 180.27423 * 25 24 23 44 44 H 1.07997 * 119.99664 * 179.83643 * 26 25 24 45 45 H 1.08005 * 119.99889 * 179.97438 * 27 26 25 46 46 H 1.07998 * 119.99837 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 3.9796 -0.8008 -1.3770 7 1 3.1962 -1.3869 -0.9198 8 6 4.9916 -1.4304 -2.0913 9 7 5.9973 -0.7286 -2.5634 10 14 4.9224 -3.2746 -2.3805 11 1 4.1971 -3.5502 -3.6468 12 1 6.3032 -3.8132 -2.4738 13 1 4.2121 -3.9265 -1.2512 14 6 4.3768 1.3361 -2.2824 15 8 4.6523 0.8288 -3.3490 16 6 4.4830 2.8294 -2.1083 17 1 3.5479 3.2170 -1.7041 18 6 5.6312 3.1534 -1.1464 19 6 6.9552 2.7277 -1.7904 20 8 7.0632 3.3487 -3.0780 21 6 5.9854 3.0345 -3.9633 22 1 5.9644 1.9595 -4.1429 23 6 6.1817 3.7583 -5.2705 24 6 5.2261 4.6525 -5.7156 25 6 5.4082 5.3197 -6.9125 26 6 6.5415 5.0859 -7.6687 27 6 7.4946 4.1878 -7.2260 28 6 7.3147 3.5239 -6.0270 29 8 4.7492 3.4434 -3.3730 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8515 0.5683 0.8409 36 1 3.9785 2.1767 0.0890 37 1 6.6682 -1.1554 -3.1188 38 1 5.6496 4.2249 -0.9476 39 1 5.4887 2.6110 -0.2118 40 1 7.7860 3.0428 -1.1590 41 1 6.9731 1.6440 -1.9057 42 1 4.3388 4.8321 -5.1268 43 1 4.6638 6.0217 -7.2581 44 1 6.6825 5.6052 -8.6050 45 1 8.3799 4.0048 -7.8171 46 1 8.0591 2.8220 -5.6814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848215116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:43 Heat of formation + Delta-G solvation = -124.698064 kcal Electronic energy + Delta-G solvation = -30981.948229 eV Core-core repulsion = 26837.794430 eV Total energy + Delta-G solvation = -4144.153799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.73256 -40.11592 -39.22940 -38.39200 -36.65612 -35.81923 -34.48028 -33.48506 -31.82049 -31.65104 -30.35754 -28.07300 -27.09824 -26.53445 -26.02565 -23.96773 -23.42705 -22.68358 -22.22705 -21.00289 -18.60767 -18.34176 -18.17189 -17.51774 -17.30880 -16.98630 -16.73264 -16.62435 -16.39931 -16.34355 -15.77478 -15.54707 -15.38157 -15.28735 -14.90417 -14.50020 -14.36715 -14.13057 -13.88915 -13.70058 -13.56556 -13.25250 -13.01785 -12.81369 -12.79786 -12.61079 -12.50946 -12.31425 -12.15352 -12.08517 -11.93702 -11.81241 -11.70410 -11.31467 -10.91944 -10.78939 -10.45750 -9.84038 -9.81948 -9.34059 -8.95099 -7.91197 -5.84753 0.35284 0.49358 1.40926 1.44624 1.51673 2.36771 2.42590 2.61511 2.66503 3.02098 3.04252 3.16349 3.36830 3.78347 3.83995 3.96541 4.02134 4.06066 4.18164 4.26086 4.31369 4.31762 4.42686 4.49941 4.53408 4.59025 4.60197 4.61602 4.63981 4.71049 4.74771 4.79700 4.84516 4.88372 5.03482 5.08515 5.11631 5.15430 5.51420 5.57304 5.63690 5.66443 5.89466 6.09610 6.19535 6.31063 6.43113 7.11249 7.30698 7.80178 8.47995 8.98309 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012456 B = 0.004265 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.447979 B = 6564.090796 C = 7510.316360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.050 3.950 4 C 0.090 3.910 5 N -0.457 5.457 6 C -0.318 4.318 7 H 0.085 0.915 8 C -0.011 4.011 9 N -0.837 5.837 10 Si 0.967 3.033 11 H -0.296 1.296 12 H -0.288 1.288 13 H -0.260 1.260 14 C 0.419 3.581 15 O -0.546 6.546 16 C 0.074 3.926 17 H 0.135 0.865 18 C -0.168 4.168 19 C 0.047 3.953 20 O -0.404 6.404 21 C 0.279 3.721 22 H 0.076 0.924 23 C -0.098 4.098 24 C -0.107 4.107 25 C -0.124 4.124 26 C -0.114 4.114 27 C -0.124 4.124 28 C -0.115 4.115 29 O -0.381 6.381 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.087 0.913 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.247 0.753 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.049 0.951 42 H 0.124 0.876 43 H 0.153 0.847 44 H 0.160 0.840 45 H 0.151 0.849 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.862 12.506 1.135 12.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.028 4.028 4 C -0.033 4.033 5 N -0.179 5.179 6 C -0.447 4.447 7 H 0.102 0.898 8 C -0.216 4.216 9 N -0.476 5.476 10 Si 0.794 3.206 11 H -0.224 1.224 12 H -0.214 1.214 13 H -0.184 1.184 14 C 0.207 3.793 15 O -0.425 6.425 16 C 0.013 3.987 17 H 0.152 0.848 18 C -0.206 4.206 19 C -0.029 4.029 20 O -0.326 6.326 21 C 0.185 3.815 22 H 0.093 0.907 23 C -0.099 4.099 24 C -0.125 4.125 25 C -0.142 4.142 26 C -0.131 4.131 27 C -0.141 4.141 28 C -0.134 4.134 29 O -0.301 6.301 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.127 0.873 37 H 0.056 0.944 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.133 0.867 41 H 0.067 0.933 42 H 0.142 0.858 43 H 0.171 0.829 44 H 0.178 0.822 45 H 0.169 0.831 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.395 12.314 0.415 12.551 hybrid contribution -0.221 -1.603 0.117 1.622 sum -2.617 10.711 0.532 11.039 Atomic orbital electron populations 1.22840 0.80627 1.03061 1.00366 1.88038 1.20522 1.28592 1.95388 1.23116 0.94202 0.84818 1.00630 1.22061 0.93071 0.99724 0.88463 1.43493 1.59275 1.05077 1.10074 1.19434 1.07289 0.81898 1.36053 0.89769 1.25905 0.94937 1.01857 0.98887 1.70149 1.10738 1.36164 1.30516 0.85319 0.76658 0.80645 0.77954 1.22356 1.21417 1.18416 1.21001 0.84971 0.88394 0.84960 1.90425 1.50377 1.74126 1.27546 1.22326 1.00514 0.91314 0.84560 0.84795 1.22765 0.94468 1.04002 0.99344 1.22853 0.98626 0.97816 0.83575 1.87996 1.46016 1.72825 1.25724 1.22140 0.75425 0.97728 0.86182 0.90695 1.19574 0.97212 0.98869 0.94216 1.21119 0.98736 0.95172 0.97448 1.21496 0.98959 0.99905 0.93838 1.21602 0.93368 0.97563 1.00613 1.21415 1.00774 0.96769 0.95170 1.21016 0.96407 1.00245 0.95683 1.87915 1.39732 1.67014 1.35430 0.89657 0.92154 0.94618 0.89561 0.94442 0.90715 0.87319 0.94385 0.87824 0.87814 0.86659 0.93289 0.85830 0.82911 0.82246 0.83102 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.95 16 2 O -0.41 -14.43 9.23 -148.98 -1.38 -15.81 16 3 C 0.05 1.51 6.28 71.98 0.45 1.96 16 4 C 0.09 3.14 5.22 86.38 0.45 3.59 16 5 N -0.46 -21.76 2.59 -635.53 -1.65 -23.41 16 6 C -0.32 -17.32 8.98 84.04 0.76 -16.56 16 7 H 0.08 4.61 6.83 -2.91 -0.02 4.59 16 8 C -0.01 -0.60 4.84 84.93 0.41 -0.19 16 9 N -0.84 -49.51 9.75 21.66 0.21 -49.30 16 10 Si 0.97 46.32 29.56 68.60 2.03 48.35 16 11 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 12 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 13 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 14 C 0.42 20.83 5.12 87.66 0.45 21.28 16 15 O -0.55 -32.70 10.55 15.77 0.17 -32.53 16 16 C 0.07 2.91 2.89 29.94 0.09 3.00 16 17 H 0.13 4.37 7.59 -2.39 -0.02 4.35 16 18 C -0.17 -5.59 5.37 30.76 0.17 -5.43 16 19 C 0.05 1.85 6.74 72.07 0.49 2.34 16 20 O -0.40 -17.41 10.42 -126.22 -1.31 -18.72 16 21 C 0.28 12.62 3.12 71.24 0.22 12.84 16 22 H 0.08 4.17 5.35 -2.38 -0.01 4.16 16 23 C -0.10 -3.88 5.56 -19.87 -0.11 -3.99 16 24 C -0.11 -3.62 9.38 22.27 0.21 -3.41 16 25 C -0.12 -3.19 10.05 22.27 0.22 -2.97 16 26 C -0.11 -2.61 10.05 22.27 0.22 -2.39 16 27 C -0.12 -3.27 10.05 22.27 0.22 -3.04 16 28 C -0.12 -4.03 9.61 22.27 0.21 -3.82 16 29 O -0.38 -16.47 8.70 -119.37 -1.04 -17.51 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 2.63 8.09 -2.39 -0.02 2.61 16 36 H 0.11 3.04 4.21 -2.38 -0.01 3.03 16 37 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 38 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.10 3.11 5.67 -2.39 -0.01 3.09 16 40 H 0.12 3.71 8.14 -2.39 -0.02 3.69 16 41 H 0.05 2.36 7.11 -2.39 -0.02 2.35 16 42 H 0.12 4.23 7.00 -2.91 -0.02 4.21 16 43 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 44 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 45 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 46 H 0.11 4.04 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -77.39 365.78 3.73 -73.67 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.99 Total: 30.09 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 5.71 Total: 5.17 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -1.44 Total: -72.71 kcal Atomic # 8 Polarization: -81.00 SS G_CDS: -3.56 Total: -84.56 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -77.39 3.73 -73.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848215116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.031 kcal (2) G-P(sol) polarization free energy of solvation -77.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds