Wall clock time and date at job start Tue Mar 31 2020 18:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00404 * 2 1 4 4 C 1.53004 * 109.47183 * 90.00016 * 3 2 1 5 5 H 1.09001 * 109.52051 * 60.13045 * 4 3 2 6 6 C 1.53135 * 109.52504 * 180.32954 * 4 3 2 7 7 O 1.43077 * 109.15161 * 175.21694 * 6 4 3 8 8 C 1.43084 * 113.58826 * 302.04645 * 7 6 4 9 9 C 1.53140 * 109.14915 * 57.95499 * 8 7 6 10 10 O 1.43077 * 109.15242 * 304.68190 * 9 8 7 11 11 C 1.34774 * 120.00245 * 180.02562 * 2 1 3 12 12 O 1.21280 * 120.00577 * 179.97438 * 11 2 1 13 13 C 1.50712 * 119.99709 * 359.97438 * 11 2 1 14 14 C 1.50697 * 109.46902 * 180.02562 * 13 11 2 15 15 C 1.38300 * 119.92778 * 269.72114 * 14 13 11 16 16 C 1.38102 * 120.06560 * 179.72572 * 15 14 13 17 17 C 1.38881 * 119.92896 * 0.55412 * 16 15 14 18 18 O 1.35759 * 120.06608 * 179.74721 * 17 16 15 19 19 C 1.34831 * 116.99679 * 174.44422 * 18 17 16 20 20 H 1.07998 * 120.00141 * 5.04739 * 19 18 17 21 21 C 1.38653 * 119.99750 * 185.05522 * 19 18 17 22 22 N 1.31566 * 120.00012 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99912 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47261 * 90.00086 * 23 21 19 25 25 H 1.48501 * 109.46653 * 210.00146 * 23 21 19 26 26 H 1.48498 * 109.47147 * 329.99821 * 23 21 19 27 27 C 1.38878 * 119.86487 * 359.71983 * 17 16 15 28 28 C 1.38099 * 119.92897 * 0.02562 * 27 17 16 29 29 H 1.08993 * 109.47240 * 89.99912 * 1 2 3 30 30 H 1.09004 * 109.46767 * 329.99552 * 1 2 3 31 31 H 1.08994 * 109.46921 * 209.99805 * 1 2 3 32 32 H 1.08999 * 109.47302 * 210.00571 * 3 2 1 33 33 H 1.08999 * 109.46948 * 330.00307 * 3 2 1 34 34 H 1.08996 * 109.52687 * 295.11526 * 6 4 3 35 35 H 1.09005 * 109.52592 * 55.31355 * 6 4 3 36 36 H 1.08993 * 109.52325 * 298.04853 * 8 7 6 37 37 H 1.09004 * 109.57195 * 177.88475 * 8 7 6 38 38 H 1.08996 * 109.52380 * 184.78495 * 9 8 7 39 39 H 1.08999 * 109.58298 * 64.62110 * 9 8 7 40 40 H 1.08997 * 109.46435 * 299.99993 * 13 11 2 41 41 H 1.08996 * 109.46942 * 59.99902 * 13 11 2 42 42 H 1.07994 * 119.96651 * 0.02562 * 15 14 13 43 43 H 1.08001 * 120.03487 * 180.26985 * 16 15 14 44 44 H 0.96995 * 119.99528 * 179.97438 * 22 21 19 45 45 H 1.07993 * 120.03522 * 180.02562 * 27 17 16 46 46 H 1.07996 * 119.96557 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 1.4425 5 1 3.0436 0.9523 1.9565 6 6 3.2112 3.0406 1.4440 7 8 3.3474 3.5018 2.7915 8 6 2.0979 3.6733 3.4671 9 6 1.3393 2.3429 3.4656 10 8 1.2031 1.8817 2.1181 11 6 2.1389 -1.1671 -0.0005 12 8 3.3517 -1.1672 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 6 2.3646 -3.6177 -0.0005 15 6 2.8086 -4.1460 -1.1991 16 6 3.7104 -5.1919 -1.2024 17 6 4.1626 -5.7208 -0.0005 18 8 5.0451 -6.7524 -0.0006 19 6 5.5312 -7.1420 1.1952 20 1 5.1551 -6.6940 2.1030 21 6 6.5142 -8.1179 1.2592 22 7 6.9721 -8.6639 0.1533 23 14 7.1882 -8.6572 2.9158 24 1 6.3795 -9.7895 3.4344 25 1 8.6005 -9.0886 2.7588 26 1 7.1206 -7.5223 3.8710 27 6 3.7105 -5.1919 1.2014 28 6 2.8128 -4.1425 1.1981 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 0.8900 0.5139 31 1 -0.3633 -0.8900 0.5138 32 1 3.1499 1.1384 -0.5139 33 1 1.6085 2.0284 -0.5138 34 1 4.1992 2.8971 1.0065 35 1 2.6571 3.7766 0.8613 36 1 1.5064 4.4305 2.9525 37 1 2.2786 3.9885 4.4948 38 1 0.3514 2.4865 3.9031 39 1 1.8923 1.6065 4.0486 40 1 0.7591 -2.5302 0.8897 41 1 0.7584 -2.5298 -0.8902 42 1 2.4534 -3.7369 -2.1333 43 1 4.0601 -5.6011 -2.1387 44 1 7.6600 -9.3462 0.1982 45 1 4.0606 -5.6008 2.1376 46 1 2.4611 -3.7305 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855679626.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:06 Heat of formation + Delta-G solvation = -143.863095 kcal Electronic energy + Delta-G solvation = -28603.033288 eV Core-core repulsion = 24458.048431 eV Total energy + Delta-G solvation = -4144.984857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.39890 -40.84984 -40.29934 -38.27887 -37.23416 -36.35847 -34.42064 -33.60240 -32.51134 -31.78375 -29.91946 -28.41889 -27.73336 -27.24204 -26.13614 -24.27572 -23.64177 -22.44241 -22.06945 -20.18745 -19.82842 -18.83391 -18.28536 -17.83905 -17.49904 -17.24811 -16.84200 -16.72548 -16.39264 -16.28753 -16.11735 -15.80958 -15.53356 -15.50187 -14.95198 -14.66306 -14.43535 -14.28638 -14.21729 -13.85272 -13.59687 -13.52195 -13.22627 -13.00669 -12.96321 -12.89793 -12.71645 -12.48752 -12.43690 -12.28968 -12.19123 -12.12367 -11.71479 -11.43564 -11.18730 -10.90457 -10.73381 -10.22522 -9.77111 -9.59394 -8.90261 -8.47966 -6.16106 0.60767 0.66738 1.32939 1.42626 1.51037 1.68584 2.05473 2.17079 2.60821 2.75290 2.83015 3.15080 3.52026 3.56209 3.78933 3.86585 3.89800 3.98789 4.03556 4.06582 4.13283 4.18764 4.30764 4.40020 4.41501 4.49631 4.55096 4.58969 4.61214 4.68372 4.69513 4.78601 4.83866 4.87266 4.89916 5.06362 5.11677 5.14941 5.29660 5.54205 5.58782 5.70956 5.77599 5.96297 5.98296 6.02295 6.21346 6.44486 6.96549 7.26410 7.77802 8.75532 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015293 B = 0.002356 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.460339 B =11883.162203 C =12965.578146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.610 5.610 3 C 0.126 3.874 4 C 0.046 3.954 5 H 0.036 0.964 6 C 0.034 3.966 7 O -0.404 6.404 8 C 0.020 3.980 9 C 0.021 3.979 10 O -0.376 6.376 11 C 0.507 3.493 12 O -0.580 6.580 13 C -0.075 4.075 14 C -0.145 4.145 15 C -0.056 4.056 16 C -0.205 4.205 17 C 0.112 3.888 18 O -0.233 6.233 19 C -0.415 4.415 20 H 0.099 0.901 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.020 2.980 24 H -0.260 1.260 25 H -0.270 1.270 26 H -0.256 1.256 27 C -0.243 4.243 28 C -0.062 4.062 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.119 0.881 38 H 0.131 0.869 39 H 0.044 0.956 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.148 0.852 43 H 0.113 0.887 44 H 0.273 0.727 45 H 0.116 0.884 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.061 26.590 3.879 32.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.343 5.343 3 C 0.002 3.998 4 C -0.014 4.014 5 H 0.054 0.946 6 C -0.043 4.043 7 O -0.323 6.323 8 C -0.056 4.056 9 C -0.056 4.056 10 O -0.295 6.295 11 C 0.296 3.704 12 O -0.459 6.459 13 C -0.114 4.114 14 C -0.146 4.146 15 C -0.074 4.074 16 C -0.224 4.224 17 C 0.062 3.938 18 O -0.140 6.140 19 C -0.491 4.491 20 H 0.116 0.884 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.838 3.162 24 H -0.184 1.184 25 H -0.194 1.194 26 H -0.180 1.180 27 C -0.263 4.263 28 C -0.080 4.080 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.137 0.863 38 H 0.149 0.851 39 H 0.063 0.937 40 H 0.140 0.860 41 H 0.148 0.852 42 H 0.165 0.835 43 H 0.131 0.869 44 H 0.082 0.918 45 H 0.134 0.866 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.221 26.318 3.621 32.214 hybrid contribution 0.969 -0.719 0.707 1.398 sum -17.252 25.599 4.328 31.172 Atomic orbital electron populations 1.22073 0.76610 1.04801 1.03095 1.47851 1.08694 1.04619 1.73109 1.21448 0.99110 0.86012 0.93185 1.23096 0.86330 0.96736 0.95196 0.94613 1.23238 1.02548 0.94483 0.84066 1.88092 1.30643 1.87038 1.26567 1.23449 0.85378 0.97158 0.99646 1.23389 1.03353 0.95212 0.83604 1.88026 1.28104 1.87296 1.26084 1.21249 0.87695 0.86458 0.74956 1.90738 1.16360 1.87911 1.50896 1.20548 0.96491 0.87257 1.07125 1.19266 1.03101 0.99701 0.92492 1.20867 0.94434 0.93495 0.98644 1.20450 1.04677 1.02015 0.95263 1.19933 0.90426 0.88122 0.95350 1.83939 1.53059 1.43485 1.33482 1.21809 1.21250 1.22396 0.83614 0.88388 1.26610 0.95799 0.95842 1.03854 1.70190 1.28905 1.27040 1.29805 0.84582 0.77754 0.79124 0.74694 1.18430 1.19439 1.17994 1.21205 1.04944 1.02862 0.97248 1.20888 0.94770 0.93857 0.98454 0.90732 0.89640 0.89805 0.89580 0.86720 0.87564 0.89790 0.90693 0.86324 0.85096 0.93727 0.85966 0.85171 0.83454 0.86850 0.91812 0.86596 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 9.98 127.77 1.28 2.01 16 2 N -0.61 -10.99 2.80 -846.75 -2.37 -13.36 16 3 C 0.13 2.10 5.14 86.38 0.44 2.54 16 4 C 0.05 0.85 3.12 30.64 0.10 0.95 16 5 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 6 C 0.03 0.54 6.34 72.03 0.46 1.00 16 7 O -0.40 -7.74 10.85 -136.01 -1.48 -9.21 16 8 C 0.02 0.24 7.05 72.03 0.51 0.75 16 9 C 0.02 0.27 7.05 72.03 0.51 0.78 16 10 O -0.38 -6.15 9.12 -136.01 -1.24 -7.39 16 11 C 0.51 13.09 7.67 87.66 0.67 13.77 16 12 O -0.58 -21.47 15.61 -3.03 -0.05 -21.52 16 13 C -0.08 -1.62 4.38 29.10 0.13 -1.49 16 14 C -0.14 -4.80 4.38 -19.83 -0.09 -4.88 16 15 C -0.06 -2.04 9.69 22.25 0.22 -1.82 16 16 C -0.20 -9.39 9.99 22.39 0.22 -9.16 16 17 C 0.11 5.97 6.65 22.58 0.15 6.12 16 18 O -0.23 -14.78 9.76 -22.85 -0.22 -15.00 16 19 C -0.41 -25.37 9.49 67.92 0.64 -24.73 16 20 H 0.10 5.56 5.20 -2.91 -0.02 5.55 16 21 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 22 N -0.92 -58.44 13.67 21.61 0.30 -58.14 16 23 Si 1.02 44.65 29.55 68.60 2.03 46.68 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 26 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 27 C -0.24 -11.51 9.17 22.39 0.21 -11.31 16 28 C -0.06 -2.33 9.69 22.25 0.22 -2.12 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.08 0.75 7.06 -2.38 -0.02 0.74 16 31 H 0.08 0.64 6.44 -2.39 -0.02 0.63 16 32 H 0.09 1.73 7.42 -2.39 -0.02 1.71 16 33 H 0.11 1.19 8.07 -2.39 -0.02 1.17 16 34 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 37 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.12 1.99 7.34 -2.39 -0.02 1.97 16 41 H 0.13 1.92 8.05 -2.39 -0.02 1.90 16 42 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 43 H 0.11 5.11 8.06 -2.91 -0.02 5.08 16 44 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 45 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 46 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -86.18 380.79 4.08 -82.10 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.99 Total: 24.38 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 6.12 Total: -28.55 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: -2.07 Total: -71.50 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -2.99 Total: -53.12 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -86.18 4.08 -82.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855679626.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.760 kcal (2) G-P(sol) polarization free energy of solvation -86.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds