Wall clock time and date at job start Tue Mar 31 2020 18:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00052 * 2 1 4 4 C 1.52997 * 109.47308 * 270.00211 * 3 2 1 5 5 H 1.09001 * 109.52366 * 305.13187 * 4 3 2 6 6 C 1.53142 * 109.52693 * 184.99995 * 4 3 2 7 7 O 1.43076 * 109.15158 * 184.79090 * 6 4 3 8 8 C 1.43070 * 113.59691 * 57.94887 * 7 6 4 9 9 C 1.53142 * 109.15121 * 302.05133 * 8 7 6 10 10 O 1.43073 * 109.15301 * 55.31219 * 9 8 7 11 11 C 1.34777 * 120.00262 * 180.02562 * 2 1 3 12 12 O 1.21284 * 120.00387 * 179.97438 * 11 2 1 13 13 C 1.50701 * 119.99849 * 359.97438 * 11 2 1 14 14 C 1.50700 * 109.47071 * 179.97438 * 13 11 2 15 15 C 1.38321 * 119.96599 * 269.72071 * 14 13 11 16 16 C 1.38282 * 120.13778 * 179.76892 * 15 14 13 17 17 C 1.38123 * 120.06838 * 0.50966 * 16 15 14 18 18 C 1.38860 * 119.92896 * 359.74993 * 17 16 15 19 19 O 1.35748 * 120.06979 * 179.97438 * 18 17 16 20 20 C 1.34829 * 116.99927 * 354.49289 * 19 18 17 21 21 H 1.08002 * 119.99832 * 5.05218 * 20 19 18 22 22 C 1.38652 * 120.00330 * 185.05615 * 20 19 18 23 23 N 1.31569 * 119.99782 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00559 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46964 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47689 * 119.99945 * 24 22 20 27 27 H 1.48501 * 109.47004 * 240.00297 * 24 22 20 28 28 C 1.38073 * 119.96374 * 90.00388 * 14 13 11 29 29 H 1.09001 * 109.47303 * 89.99683 * 1 2 3 30 30 H 1.09002 * 109.46844 * 210.00374 * 1 2 3 31 31 H 1.08998 * 109.46883 * 329.99359 * 1 2 3 32 32 H 1.09002 * 109.47168 * 30.00360 * 3 2 1 33 33 H 1.08997 * 109.47068 * 150.00307 * 3 2 1 34 34 H 1.09004 * 109.52219 * 304.68899 * 6 4 3 35 35 H 1.08993 * 109.52378 * 64.88444 * 6 4 3 36 36 H 1.08997 * 109.52242 * 61.94873 * 8 7 6 37 37 H 1.08998 * 109.52575 * 182.08328 * 8 7 6 38 38 H 1.09001 * 109.52506 * 175.21520 * 9 8 7 39 39 H 1.09004 * 109.52219 * 295.40841 * 9 8 7 40 40 H 1.08997 * 109.46840 * 300.00226 * 13 11 2 41 41 H 1.09003 * 109.47183 * 60.00056 * 13 11 2 42 42 H 1.08001 * 119.93166 * 0.02562 * 15 14 13 43 43 H 1.08000 * 119.96913 * 180.25647 * 16 15 14 44 44 H 1.07996 * 120.03726 * 179.72132 * 17 16 15 45 45 H 0.96994 * 119.99720 * 180.02562 * 23 22 20 46 46 H 1.08003 * 120.03453 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 2.9621 0.9129 -1.9830 6 6 3.3245 2.9693 -1.4457 7 8 3.4652 3.4394 -2.7897 8 6 2.2184 3.7305 -3.4281 9 6 1.3463 2.4716 -3.4248 10 8 1.2055 2.0016 -2.0809 11 6 2.1389 -1.1672 -0.0005 12 8 3.3517 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 6 2.3648 -3.6177 -0.0018 15 6 2.8084 -4.1461 -1.2007 16 6 3.7106 -5.1940 -1.2060 17 6 4.1636 -5.7232 -0.0133 18 6 3.7160 -5.1985 1.1919 19 8 4.1590 -5.7168 2.3657 20 6 4.9423 -6.8119 2.2945 21 1 5.2575 -7.1887 1.3326 22 6 5.3433 -7.4543 3.4559 23 7 4.9598 -6.9950 4.6276 24 14 6.4280 -8.9719 3.3572 25 1 6.7168 -9.2821 1.9340 26 1 7.7016 -8.7178 4.0773 27 1 5.7273 -10.1226 3.9818 28 6 2.8138 -4.1424 1.1938 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1384 0.5138 34 1 2.8526 3.7410 -0.8375 35 1 4.3072 2.7328 -1.0377 36 1 1.7093 4.5277 -2.8865 37 1 2.4001 4.0463 -4.4554 38 1 0.3636 2.7082 -3.8329 39 1 1.8183 1.7000 -4.0331 40 1 0.7591 -2.5302 0.8897 41 1 0.7584 -2.5299 -0.8903 42 1 2.4525 -3.7367 -2.1345 43 1 4.0584 -5.6017 -2.1437 44 1 4.8648 -6.5446 -0.0181 45 1 5.2406 -7.4442 5.4401 46 1 2.4638 -3.7322 2.1296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855682568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:20 Heat of formation + Delta-G solvation = -118.672452 kcal Electronic energy + Delta-G solvation = -28642.423572 eV Core-core repulsion = 24498.531064 eV Total energy + Delta-G solvation = -4143.892509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.51640 -39.71380 -38.75348 -36.66038 -36.31222 -35.44798 -32.88077 -32.25420 -31.72614 -29.36601 -29.02972 -27.39959 -27.00298 -25.62232 -25.09869 -23.55362 -21.63135 -21.50517 -20.88154 -19.23821 -17.57609 -17.41331 -17.13013 -16.93906 -16.65560 -16.39170 -15.94203 -15.87424 -15.37265 -14.99230 -14.85648 -14.34565 -14.31122 -13.85753 -13.60301 -13.49488 -13.24943 -13.10838 -12.88407 -12.57339 -12.52429 -12.44901 -12.29503 -12.09388 -11.78280 -11.76809 -11.46628 -11.22793 -11.02328 -10.79279 -10.77332 -10.70089 -10.55333 -10.38628 -9.75402 -9.48995 -9.27202 -8.78445 -8.74103 -7.99709 -7.15176 -6.38781 -3.97561 2.14963 2.45663 2.73120 2.93911 3.16557 3.17484 3.23165 3.30244 3.37463 4.01618 4.22767 4.49082 4.55929 4.60697 4.67126 4.72435 4.81346 4.92042 4.98712 5.03310 5.11296 5.15506 5.16929 5.21788 5.29101 5.33195 5.43609 5.49859 5.56315 5.60678 5.61069 5.73716 5.81947 5.99590 6.24037 6.36916 6.40568 6.59672 6.67517 6.72576 6.98349 7.13850 7.31173 7.33574 7.43646 7.50570 7.89515 8.06742 8.27357 9.07239 9.78768 10.79697 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022535 B = 0.002156 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.211134 B =12984.292796 C =13011.071638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.619 5.619 3 C 0.128 3.872 4 C 0.039 3.961 5 H 0.075 0.925 6 C 0.033 3.967 7 O -0.378 6.378 8 C 0.023 3.977 9 C 0.025 3.975 10 O -0.372 6.372 11 C 0.515 3.485 12 O -0.518 6.518 13 C -0.091 4.091 14 C -0.033 4.033 15 C -0.196 4.196 16 C -0.075 4.075 17 C -0.231 4.231 18 C 0.155 3.845 19 O -0.180 6.180 20 C -0.389 4.389 21 H 0.092 0.908 22 C 0.037 3.963 23 N -0.865 5.865 24 Si 0.941 3.059 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.174 4.174 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.126 0.874 45 H 0.268 0.732 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.089 19.414 -13.503 26.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.354 5.354 3 C 0.004 3.996 4 C -0.020 4.020 5 H 0.093 0.907 6 C -0.045 4.045 7 O -0.296 6.296 8 C -0.054 4.054 9 C -0.052 4.052 10 O -0.291 6.291 11 C 0.303 3.697 12 O -0.392 6.392 13 C -0.131 4.131 14 C -0.034 4.034 15 C -0.215 4.215 16 C -0.093 4.093 17 C -0.250 4.250 18 C 0.102 3.898 19 O -0.084 6.084 20 C -0.466 4.466 21 H 0.109 0.891 22 C -0.166 4.166 23 N -0.500 5.500 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.193 4.193 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.127 0.873 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.078 0.922 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.144 0.856 45 H 0.078 0.922 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.428 19.397 -13.002 25.574 hybrid contribution 0.449 -0.666 -0.230 0.836 sum -9.979 18.732 -13.232 25.011 Atomic orbital electron populations 1.21773 0.79049 1.02850 1.02098 1.47781 1.07218 1.05293 1.75096 1.21360 0.99234 0.85602 0.93391 1.23297 0.85861 0.96988 0.95890 0.90736 1.23207 1.01852 0.95232 0.84169 1.88122 1.28656 1.85836 1.27009 1.23255 0.85994 0.96910 0.99241 1.23211 1.01367 0.95897 0.84727 1.88081 1.28728 1.85919 1.26370 1.20836 0.88269 0.85001 0.75554 1.90751 1.13840 1.87021 1.47637 1.20616 0.97777 0.90325 1.04367 1.18681 0.96966 0.94601 0.93118 1.20339 1.04008 1.01169 0.96005 1.20674 0.96136 0.95683 0.96801 1.21174 1.06555 1.05160 0.92125 1.19275 0.91595 0.92393 0.86576 1.83976 1.58878 1.40795 1.24763 1.21364 1.27221 1.03300 0.94682 0.89090 1.25278 0.98106 0.99020 0.94221 1.70057 1.43090 1.39489 0.97396 0.85651 0.79068 0.79956 0.78765 1.19138 1.20200 1.20207 1.19937 1.02272 0.99972 0.97167 0.92302 0.90964 0.91283 0.89722 0.87973 0.91959 0.87337 0.92178 0.87883 0.87842 0.92219 0.88240 0.88456 0.88053 0.87520 0.85627 0.92188 0.86865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 9.90 59.85 0.59 1.26 16 2 N -0.62 -6.98 2.84 -181.57 -0.52 -7.49 16 3 C 0.13 1.28 5.14 -4.04 -0.02 1.26 16 4 C 0.04 0.39 3.09 -26.66 -0.08 0.31 16 5 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 6 C 0.03 0.29 6.34 37.23 0.24 0.53 16 7 O -0.38 -3.86 10.85 -48.80 -0.53 -4.39 16 8 C 0.02 0.17 7.05 37.23 0.26 0.43 16 9 C 0.03 0.19 7.05 37.23 0.26 0.45 16 10 O -0.37 -3.57 10.07 -48.80 -0.49 -4.06 16 11 C 0.51 7.72 7.67 -10.98 -0.08 7.64 16 12 O -0.52 -10.10 15.61 5.55 0.09 -10.02 16 13 C -0.09 -1.27 4.38 -29.03 -0.13 -1.39 16 14 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 15 C -0.20 -3.65 9.70 -39.53 -0.38 -4.03 16 16 C -0.07 -1.47 10.04 -39.61 -0.40 -1.87 16 17 C -0.23 -5.31 9.17 -39.39 -0.36 -5.67 16 18 C 0.15 3.94 6.65 -39.11 -0.26 3.68 16 19 O -0.18 -5.33 9.76 0.06 0.00 -5.33 16 20 C -0.39 -11.22 9.49 30.89 0.29 -10.92 16 21 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 22 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 23 N -0.86 -25.92 13.67 55.48 0.76 -25.16 16 24 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 C -0.17 -3.89 9.65 -39.40 -0.38 -4.27 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.50 6.44 -51.93 -0.33 0.16 16 31 H 0.07 0.44 7.89 -51.93 -0.41 0.03 16 32 H 0.08 0.65 7.89 -51.93 -0.41 0.24 16 33 H 0.10 1.13 7.42 -51.93 -0.39 0.75 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 1.18 7.34 -51.93 -0.38 0.80 16 41 H 0.10 1.09 8.05 -51.93 -0.42 0.67 16 42 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.13 2.87 5.64 -52.49 -0.30 2.58 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.11 2.45 8.06 -52.48 -0.42 2.03 16 LS Contribution 382.34 15.07 5.76 5.76 Total: -1.00 -36.06 382.34 -7.65 -43.71 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.69 Total: 3.68 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -1.00 Total: -12.72 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.24 Total: -32.66 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.93 Total: -23.80 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.06 -7.65 -43.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855682568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.962 kcal (2) G-P(sol) polarization free energy of solvation -36.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds