Wall clock time and date at job start Tue Mar 31 2020 18:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00052 * 2 1 4 4 C 1.52997 * 109.47308 * 270.00211 * 3 2 1 5 5 H 1.09001 * 109.52366 * 305.13187 * 4 3 2 6 6 C 1.53142 * 109.52693 * 184.99995 * 4 3 2 7 7 O 1.43076 * 109.15158 * 184.79090 * 6 4 3 8 8 C 1.43070 * 113.59691 * 57.94887 * 7 6 4 9 9 C 1.53142 * 109.15121 * 302.05133 * 8 7 6 10 10 O 1.43073 * 109.15301 * 55.31219 * 9 8 7 11 11 C 1.34777 * 120.00262 * 180.02562 * 2 1 3 12 12 O 1.21284 * 120.00387 * 179.97438 * 11 2 1 13 13 C 1.50701 * 119.99849 * 359.97438 * 11 2 1 14 14 C 1.50700 * 109.47071 * 179.97438 * 13 11 2 15 15 C 1.38321 * 119.96599 * 269.72071 * 14 13 11 16 16 C 1.38282 * 120.13778 * 179.76892 * 15 14 13 17 17 C 1.38123 * 120.06838 * 0.50966 * 16 15 14 18 18 C 1.38860 * 119.92896 * 359.74993 * 17 16 15 19 19 O 1.35748 * 120.06979 * 179.97438 * 18 17 16 20 20 C 1.34829 * 116.99927 * 354.49289 * 19 18 17 21 21 H 1.08002 * 119.99832 * 5.05218 * 20 19 18 22 22 C 1.38652 * 120.00330 * 185.05615 * 20 19 18 23 23 N 1.31569 * 119.99782 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00559 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46964 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47689 * 119.99945 * 24 22 20 27 27 H 1.48501 * 109.47004 * 240.00297 * 24 22 20 28 28 C 1.38073 * 119.96374 * 90.00388 * 14 13 11 29 29 H 1.09001 * 109.47303 * 89.99683 * 1 2 3 30 30 H 1.09002 * 109.46844 * 210.00374 * 1 2 3 31 31 H 1.08998 * 109.46883 * 329.99359 * 1 2 3 32 32 H 1.09002 * 109.47168 * 30.00360 * 3 2 1 33 33 H 1.08997 * 109.47068 * 150.00307 * 3 2 1 34 34 H 1.09004 * 109.52219 * 304.68899 * 6 4 3 35 35 H 1.08993 * 109.52378 * 64.88444 * 6 4 3 36 36 H 1.08997 * 109.52242 * 61.94873 * 8 7 6 37 37 H 1.08998 * 109.52575 * 182.08328 * 8 7 6 38 38 H 1.09001 * 109.52506 * 175.21520 * 9 8 7 39 39 H 1.09004 * 109.52219 * 295.40841 * 9 8 7 40 40 H 1.08997 * 109.46840 * 300.00226 * 13 11 2 41 41 H 1.09003 * 109.47183 * 60.00056 * 13 11 2 42 42 H 1.08001 * 119.93166 * 0.02562 * 15 14 13 43 43 H 1.08000 * 119.96913 * 180.25647 * 16 15 14 44 44 H 1.07996 * 120.03726 * 179.72132 * 17 16 15 45 45 H 0.96994 * 119.99720 * 180.02562 * 23 22 20 46 46 H 1.08003 * 120.03453 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 2.9621 0.9129 -1.9830 6 6 3.3245 2.9693 -1.4457 7 8 3.4652 3.4394 -2.7897 8 6 2.2184 3.7305 -3.4281 9 6 1.3463 2.4716 -3.4248 10 8 1.2055 2.0016 -2.0809 11 6 2.1389 -1.1672 -0.0005 12 8 3.3517 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 6 2.3648 -3.6177 -0.0018 15 6 2.8084 -4.1461 -1.2007 16 6 3.7106 -5.1940 -1.2060 17 6 4.1636 -5.7232 -0.0133 18 6 3.7160 -5.1985 1.1919 19 8 4.1590 -5.7168 2.3657 20 6 4.9423 -6.8119 2.2945 21 1 5.2575 -7.1887 1.3326 22 6 5.3433 -7.4543 3.4559 23 7 4.9598 -6.9950 4.6276 24 14 6.4280 -8.9719 3.3572 25 1 6.7168 -9.2821 1.9340 26 1 7.7016 -8.7178 4.0773 27 1 5.7273 -10.1226 3.9818 28 6 2.8138 -4.1424 1.1938 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1384 0.5138 34 1 2.8526 3.7410 -0.8375 35 1 4.3072 2.7328 -1.0377 36 1 1.7093 4.5277 -2.8865 37 1 2.4001 4.0463 -4.4554 38 1 0.3636 2.7082 -3.8329 39 1 1.8183 1.7000 -4.0331 40 1 0.7591 -2.5302 0.8897 41 1 0.7584 -2.5299 -0.8903 42 1 2.4525 -3.7367 -2.1345 43 1 4.0584 -5.6017 -2.1437 44 1 4.8648 -6.5446 -0.0181 45 1 5.2406 -7.4442 5.4401 46 1 2.4638 -3.7322 2.1296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855682568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:18 Heat of formation + Delta-G solvation = -143.711943 kcal Electronic energy + Delta-G solvation = -28643.509366 eV Core-core repulsion = 24498.531064 eV Total energy + Delta-G solvation = -4144.978303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.43956 -40.85872 -40.31382 -38.26580 -37.24342 -36.41112 -34.35809 -33.84128 -32.91656 -30.91169 -29.95721 -28.65382 -27.76419 -27.31838 -26.34388 -24.35226 -23.27111 -22.63053 -22.13252 -20.40164 -19.41564 -18.74119 -18.32566 -17.82858 -17.49522 -17.28948 -16.89051 -16.75048 -16.62243 -16.31599 -16.13886 -16.00348 -15.55128 -15.44858 -15.01792 -14.60343 -14.37424 -14.30764 -14.01678 -13.96922 -13.58554 -13.53250 -13.24321 -13.07999 -12.97453 -12.84277 -12.75476 -12.49023 -12.45019 -12.31467 -12.22697 -12.08519 -11.71286 -11.42708 -11.20226 -10.94571 -10.79831 -10.23942 -9.65975 -9.62703 -8.98374 -8.47164 -6.15593 0.51490 0.74946 1.34006 1.42776 1.52836 1.61485 2.00535 2.17600 2.60470 2.74976 2.83296 3.15875 3.43070 3.56476 3.72259 3.85182 3.87119 3.95773 4.05131 4.09333 4.13791 4.28081 4.30657 4.36006 4.39644 4.45690 4.54891 4.57085 4.59288 4.61013 4.69930 4.72916 4.80671 4.86293 4.87868 5.02983 5.08899 5.13112 5.30070 5.52940 5.64516 5.72226 5.74800 5.96821 5.98215 6.02961 6.21160 6.37616 6.97456 7.18593 7.78956 8.76630 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022535 B = 0.002156 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.211134 B =12984.292796 C =13011.071638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.610 5.610 3 C 0.124 3.876 4 C 0.049 3.951 5 H 0.041 0.959 6 C 0.034 3.966 7 O -0.403 6.403 8 C 0.019 3.981 9 C 0.021 3.979 10 O -0.377 6.377 11 C 0.511 3.489 12 O -0.577 6.577 13 C -0.089 4.089 14 C -0.025 4.025 15 C -0.182 4.182 16 C -0.073 4.073 17 C -0.247 4.247 18 C 0.113 3.887 19 O -0.234 6.234 20 C -0.413 4.413 21 H 0.100 0.900 22 C -0.025 4.025 23 N -0.922 5.922 24 Si 1.021 2.979 25 H -0.252 1.252 26 H -0.269 1.269 27 H -0.266 1.266 28 C -0.191 4.191 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.131 0.869 39 H 0.048 0.952 40 H 0.122 0.878 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.118 0.882 45 H 0.273 0.727 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.098 20.686 -16.177 29.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.001 3.999 4 C -0.010 4.010 5 H 0.059 0.941 6 C -0.044 4.044 7 O -0.322 6.322 8 C -0.057 4.057 9 C -0.055 4.055 10 O -0.296 6.296 11 C 0.300 3.700 12 O -0.456 6.456 13 C -0.128 4.128 14 C -0.026 4.026 15 C -0.200 4.200 16 C -0.091 4.091 17 C -0.266 4.266 18 C 0.063 3.937 19 O -0.141 6.141 20 C -0.489 4.489 21 H 0.117 0.883 22 C -0.222 4.222 23 N -0.560 5.560 24 Si 0.840 3.160 25 H -0.176 1.176 26 H -0.194 1.194 27 H -0.191 1.191 28 C -0.210 4.210 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.132 0.868 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.091 0.909 37 H 0.139 0.861 38 H 0.149 0.851 39 H 0.067 0.933 40 H 0.140 0.860 41 H 0.155 0.845 42 H 0.161 0.839 43 H 0.162 0.838 44 H 0.136 0.864 45 H 0.082 0.918 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.511 20.727 -15.731 28.872 hybrid contribution 0.861 -0.788 0.338 1.215 sum -11.650 19.939 -15.393 27.753 Atomic orbital electron populations 1.22062 0.76500 1.04621 1.03220 1.47837 1.08769 1.04601 1.73057 1.21470 0.99063 0.85719 0.93656 1.23046 0.86166 0.96499 0.95332 0.94126 1.23220 1.01723 0.95192 0.84236 1.88087 1.30618 1.85943 1.27559 1.23467 0.84979 0.97070 1.00231 1.23402 1.02895 0.95632 0.83590 1.88051 1.28127 1.86034 1.27384 1.20984 0.87605 0.86259 0.75105 1.90739 1.16201 1.87879 1.50794 1.20719 0.96873 0.87747 1.07425 1.19192 0.96535 0.95050 0.91789 1.20934 1.01996 0.99574 0.97531 1.21116 0.95575 0.95512 0.96904 1.21289 1.07032 1.05523 0.92745 1.19867 0.93325 0.93910 0.86605 1.83935 1.60901 1.42126 1.27097 1.21860 1.27740 1.03771 0.95552 0.88272 1.26621 0.99576 1.02566 0.93441 1.70200 1.45589 1.41847 0.98387 0.84506 0.76796 0.75166 0.79555 1.17575 1.19366 1.19055 1.20199 1.02417 0.99729 0.98698 0.91373 0.89600 0.89312 0.86778 0.89703 0.90024 0.87705 0.90928 0.86123 0.85088 0.93332 0.85983 0.84516 0.83942 0.83775 0.86426 0.91847 0.87482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 9.90 127.77 1.26 2.18 16 2 N -0.61 -12.38 2.84 -846.76 -2.40 -14.78 16 3 C 0.12 2.31 5.14 86.38 0.44 2.75 16 4 C 0.05 0.94 3.09 30.64 0.09 1.03 16 5 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 6 C 0.03 0.57 6.34 72.03 0.46 1.02 16 7 O -0.40 -7.77 10.85 -136.00 -1.48 -9.25 16 8 C 0.02 0.23 7.05 72.03 0.51 0.73 16 9 C 0.02 0.27 7.05 72.03 0.51 0.77 16 10 O -0.38 -6.28 10.07 -136.00 -1.37 -7.64 16 11 C 0.51 14.57 7.67 87.66 0.67 15.24 16 12 O -0.58 -22.69 15.61 -3.04 -0.05 -22.73 16 13 C -0.09 -2.20 4.38 29.10 0.13 -2.07 16 14 C -0.03 -0.91 4.37 -19.88 -0.09 -0.99 16 15 C -0.18 -6.24 9.70 22.30 0.22 -6.02 16 16 C -0.07 -2.75 10.04 22.25 0.22 -2.53 16 17 C -0.25 -11.62 9.17 22.39 0.21 -11.42 16 18 C 0.11 6.04 6.65 22.58 0.15 6.19 16 19 O -0.23 -14.83 9.76 -22.71 -0.22 -15.05 16 20 C -0.41 -25.16 9.49 67.92 0.64 -24.51 16 21 H 0.10 5.59 5.20 -2.91 -0.02 5.57 16 22 C -0.03 -1.47 5.49 84.83 0.47 -1.01 16 23 N -0.92 -58.25 13.67 21.61 0.30 -57.96 16 24 Si 1.02 44.39 29.55 68.60 2.03 46.42 16 25 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 28 C -0.19 -8.80 9.65 22.39 0.22 -8.58 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.81 6.44 -2.39 -0.02 0.79 16 31 H 0.09 0.75 7.89 -2.39 -0.02 0.73 16 32 H 0.11 1.44 7.89 -2.39 -0.02 1.42 16 33 H 0.08 1.90 7.42 -2.39 -0.02 1.88 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.12 2.52 7.34 -2.39 -0.02 2.51 16 41 H 0.14 2.35 8.05 -2.39 -0.02 2.33 16 42 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 43 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 44 H 0.12 5.59 5.64 -2.91 -0.02 5.58 16 45 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 46 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -85.95 382.34 3.90 -82.05 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.99 Total: 26.14 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: 6.11 Total: -27.20 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -2.11 Total: -72.74 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -3.11 Total: -54.67 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -85.95 3.90 -82.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855682568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.658 kcal (2) G-P(sol) polarization free energy of solvation -85.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds