Wall clock time and date at job start Tue Mar 31 2020 18:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35892 * 117.00127 * 2 1 4 4 C 1.38813 * 120.01965 * 0.02562 * 3 2 1 5 5 C 1.38172 * 120.08922 * 179.97438 * 4 3 2 6 6 C 1.38165 * 120.12321 * 0.02562 * 5 4 3 7 7 C 1.38899 * 120.03839 * 359.97418 * 6 5 4 8 8 N 1.39887 * 120.04214 * 180.02562 * 7 6 5 9 9 C 1.34781 * 119.99856 * 39.67548 * 8 7 6 10 10 S 1.71203 * 119.99832 * 6.35386 * 9 8 7 11 11 N 1.34773 * 119.99958 * 186.35015 * 9 8 7 12 12 C 1.47084 * 120.88109 * 354.43985 * 11 9 8 13 13 C 1.53234 * 108.52291 * 129.08546 * 12 11 9 14 14 N 1.46901 * 109.33993 * 53.82583 * 13 12 11 15 15 C 1.46902 * 111.00096 * 172.74656 * 14 13 12 16 16 C 1.50706 * 109.47107 * 294.30627 * 15 14 13 17 17 H 1.07999 * 119.99581 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99951 * 180.02562 * 16 15 14 19 19 N 1.31506 * 119.99972 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99792 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.46940 * 89.99824 * 20 18 16 22 22 H 1.48502 * 109.46874 * 210.00056 * 20 18 16 23 23 H 1.48493 * 109.46977 * 329.99888 * 20 18 16 24 24 C 1.46896 * 111.27241 * 296.89912 * 14 13 12 25 25 C 1.47080 * 120.88084 * 174.71368 * 11 9 8 26 26 C 1.38575 * 120.02418 * 180.27572 * 3 2 1 27 27 H 1.08995 * 109.46724 * 299.99814 * 1 2 3 28 28 H 1.09001 * 109.46959 * 59.99636 * 1 2 3 29 29 H 1.09000 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.95792 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.94000 * 180.02562 * 5 4 3 32 32 H 1.08005 * 119.97973 * 179.97438 * 6 5 4 33 33 H 0.97000 * 120.00360 * 219.66899 * 8 7 6 34 34 H 1.09000 * 109.62123 * 248.79494 * 12 11 9 35 35 H 1.09000 * 109.62958 * 9.37345 * 12 11 9 36 36 H 1.08993 * 109.49510 * 293.86976 * 13 12 11 37 37 H 1.08998 * 109.49345 * 173.78642 * 13 12 11 38 38 H 1.08993 * 109.47199 * 54.30028 * 15 14 13 39 39 H 1.08996 * 109.46900 * 174.30712 * 15 14 13 40 40 H 0.97006 * 120.00239 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.48957 * 303.13886 * 24 14 13 42 42 H 1.08998 * 109.49506 * 183.06219 * 24 14 13 43 43 H 1.08997 * 109.63042 * 350.62597 * 25 11 9 44 44 H 1.08999 * 109.62716 * 111.20395 * 25 11 9 45 45 H 1.08002 * 120.05847 * 0.02615 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2905 2.3753 0.0005 5 6 1.9163 3.6071 0.0011 6 6 3.2958 3.6840 0.0005 7 6 4.0569 2.5222 0.0000 8 7 5.4537 2.6000 0.0000 9 6 6.0765 3.5341 0.7456 10 16 5.1722 4.5177 1.8160 11 7 7.4113 3.6938 0.6486 12 6 8.2231 2.7817 -0.1713 13 6 9.1010 3.6193 -1.1071 14 7 9.8670 4.5910 -0.3154 15 6 10.8468 5.2964 -1.1523 16 6 11.8867 4.3204 -1.6394 17 1 11.8259 3.2802 -1.3553 18 6 12.9160 4.7555 -2.4468 19 7 12.9902 6.0222 -2.7924 20 14 14.2053 3.5458 -3.0500 21 1 13.7690 2.9615 -4.3436 22 1 15.4980 4.2523 -3.2368 23 1 14.3737 2.4619 -2.0490 24 6 8.9784 5.5401 0.3683 25 6 8.0954 4.7813 1.3646 26 6 3.4299 1.2839 -0.0058 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2119 2.3183 0.0014 31 1 1.3260 4.5116 0.0019 32 1 3.7826 4.6482 0.0005 33 1 5.9739 1.9816 -0.5365 34 1 8.8545 2.1723 0.4752 35 1 7.5691 2.1389 -0.7606 36 1 8.4699 4.1486 -1.8210 37 1 9.7881 2.9650 -1.6437 38 1 10.3395 5.7434 -2.0072 39 1 11.3291 6.0786 -0.5661 40 1 13.7142 6.3284 -3.3608 41 1 8.3490 6.0428 -0.3661 42 1 9.5765 6.2789 0.9017 43 1 7.3571 5.4604 1.7908 44 1 8.7146 4.3640 2.1587 45 1 4.0194 0.3789 -0.0107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865266913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:59 Heat of formation + Delta-G solvation = 36.828289 kcal Electronic energy + Delta-G solvation = -26028.659157 eV Core-core repulsion = 22366.555288 eV Total energy + Delta-G solvation = -3662.103869 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.74789 -39.88301 -38.37918 -36.54483 -34.66967 -32.63771 -31.32125 -31.05838 -29.73185 -28.45060 -27.55242 -25.99449 -24.32206 -23.48271 -22.94064 -21.87804 -21.43094 -19.94001 -18.96974 -18.32832 -16.95729 -16.48387 -16.43048 -16.21713 -15.97534 -15.58062 -15.16428 -14.83987 -14.73601 -14.66725 -14.07799 -13.99310 -13.81355 -13.69065 -13.20417 -12.64945 -12.52240 -12.42510 -12.12109 -11.96934 -11.55907 -11.47637 -11.26695 -11.25808 -11.16747 -11.08156 -10.87991 -10.76281 -10.65018 -10.04197 -9.78083 -9.36686 -8.70315 -8.59110 -8.37179 -7.74795 -7.53769 -7.04260 -6.17075 -4.20263 0.76243 1.32444 1.56907 1.84072 2.42522 2.89967 3.18936 3.21366 3.28994 3.31711 3.62501 4.26959 4.45845 4.58092 4.76143 4.78803 4.82597 4.83601 4.98388 5.03354 5.12567 5.13141 5.19080 5.21120 5.31302 5.34859 5.42520 5.51640 5.56429 5.84944 5.94879 6.03272 6.07853 6.12769 6.18158 6.20460 6.36185 6.44541 6.52492 6.80895 7.03438 7.06808 7.11939 7.17962 7.58746 7.82354 7.95118 8.30448 8.86128 9.44920 10.93462 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020312 B = 0.002348 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.136487 B =11922.706570 C =12779.434855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.130 3.870 4 C -0.207 4.207 5 C -0.073 4.073 6 C -0.107 4.107 7 C 0.175 3.825 8 N -0.639 5.639 9 C 0.562 3.438 10 S -0.640 6.640 11 N -0.549 5.549 12 C 0.093 3.907 13 C 0.052 3.948 14 N -0.536 5.536 15 C 0.194 3.806 16 C -0.514 4.514 17 H 0.063 0.937 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.899 3.101 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.040 3.960 25 C 0.109 3.891 26 C -0.162 4.162 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.148 0.852 33 H 0.407 0.593 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.029 0.971 37 H 0.105 0.895 38 H -0.007 1.007 39 H 0.035 0.965 40 H 0.263 0.737 41 H 0.031 0.969 42 H 0.091 0.909 43 H 0.123 0.877 44 H 0.087 0.913 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.779 -9.576 3.695 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.084 3.916 4 C -0.227 4.227 5 C -0.093 4.093 6 C -0.130 4.130 7 C 0.081 3.919 8 N -0.268 5.268 9 C 0.203 3.797 10 S -0.507 6.507 11 N -0.254 5.254 12 C -0.032 4.032 13 C -0.077 4.077 14 N -0.261 5.261 15 C 0.069 3.931 16 C -0.553 4.553 17 H 0.082 0.918 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.089 4.089 25 C -0.013 4.013 26 C -0.184 4.184 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.166 0.834 33 H 0.248 0.752 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.047 0.953 37 H 0.123 0.877 38 H 0.011 0.989 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.110 0.890 43 H 0.141 0.859 44 H 0.105 0.895 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.723 -9.212 4.650 24.049 hybrid contribution 0.920 -0.910 -1.803 2.219 sum -20.802 -10.121 2.847 23.309 Atomic orbital electron populations 1.23042 0.78337 1.03819 1.01426 1.86039 1.21368 1.26851 1.89041 1.18468 0.91344 0.84247 0.97582 1.21247 0.99941 0.92344 1.09123 1.20741 0.93825 0.97016 0.97691 1.21387 0.93618 0.98850 0.99095 1.16992 0.80297 0.93540 1.01045 1.42304 1.05895 1.33739 1.44850 1.22314 0.85579 0.86271 0.85488 1.93290 1.64019 1.51292 1.42127 1.47612 1.03009 1.29996 1.44825 1.22388 0.93724 0.92586 0.94485 1.22308 0.95565 0.96362 0.93498 1.62144 1.14547 1.16959 1.32427 1.19746 0.88998 0.94012 0.90303 1.21092 1.09104 0.95346 1.29740 0.91848 1.24997 0.98000 0.95304 0.96199 1.69945 1.32706 1.14351 1.36357 0.86488 0.80891 0.80974 0.79015 1.20711 1.21144 1.19743 1.22468 0.94723 0.94974 0.96742 1.22546 0.95943 0.88224 0.94627 1.19905 0.92114 0.96635 1.09736 0.92575 0.92642 0.88353 0.85515 0.85264 0.83406 0.75218 0.88695 0.90779 0.95282 0.87684 0.98925 0.94690 0.92725 0.95051 0.89029 0.85936 0.89503 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.14 10.49 -19.40 -0.20 -3.34 16 3 C 0.13 1.38 6.68 -39.24 -0.26 1.12 16 4 C -0.21 -1.99 9.04 -39.39 -0.36 -2.34 16 5 C -0.07 -0.76 10.03 -39.63 -0.40 -1.16 16 6 C -0.11 -1.34 7.85 -39.36 -0.31 -1.65 16 7 C 0.18 2.11 5.96 -83.73 -0.50 1.61 16 8 N -0.64 -7.35 5.24 -11.42 -0.06 -7.41 16 9 C 0.56 7.82 7.48 -86.92 -0.65 7.17 16 10 S -0.64 -10.77 24.23 -107.50 -2.60 -13.37 16 11 N -0.55 -7.38 3.01 -174.48 -0.53 -7.90 16 12 C 0.09 1.14 6.59 -3.60 -0.02 1.11 16 13 C 0.05 0.84 5.46 -3.70 -0.02 0.82 16 14 N -0.54 -10.13 4.62 -235.77 -1.09 -11.22 16 15 C 0.19 4.64 4.72 -4.97 -0.02 4.62 16 16 C -0.51 -13.33 8.41 -34.44 -0.29 -13.62 16 17 H 0.06 1.60 7.13 -52.49 -0.37 1.23 16 18 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 19 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 20 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 25 C 0.11 1.54 6.45 -3.60 -0.02 1.52 16 26 C -0.16 -1.79 9.91 -39.25 -0.39 -2.18 16 27 H 0.06 0.28 7.66 -51.93 -0.40 -0.11 16 28 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.13 0.89 6.29 -52.48 -0.33 0.56 16 31 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.15 2.08 6.07 -45.17 -0.27 1.81 16 33 H 0.41 3.64 6.33 -40.82 -0.26 3.39 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.67 5.64 -51.93 -0.29 0.38 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.11 1.81 6.67 -51.93 -0.35 1.46 16 38 H -0.01 -0.18 8.12 -51.93 -0.42 -0.61 16 39 H 0.04 0.90 7.97 -51.93 -0.41 0.49 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 1.45 7.99 -51.93 -0.41 1.04 16 43 H 0.12 1.79 6.10 -51.56 -0.31 1.48 16 44 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -31.66 369.96 -11.89 -43.55 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.33 Total: 3.08 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -2.37 Total: 0.25 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.94 Total: -51.19 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: -0.20 Total: -3.34 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: -10.77 SS G_CDS: -2.60 Total: -13.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.66 -11.89 -43.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865266913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.381 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds