Wall clock time and date at job start Tue Mar 31 2020 18:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35892 * 117.00127 * 2 1 4 4 C 1.38813 * 120.01965 * 0.02562 * 3 2 1 5 5 C 1.38172 * 120.08922 * 179.97438 * 4 3 2 6 6 C 1.38165 * 120.12321 * 0.02562 * 5 4 3 7 7 C 1.38899 * 120.03839 * 359.97418 * 6 5 4 8 8 N 1.39887 * 120.04214 * 180.02562 * 7 6 5 9 9 C 1.34781 * 119.99856 * 39.67548 * 8 7 6 10 10 S 1.71203 * 119.99832 * 6.35386 * 9 8 7 11 11 N 1.34773 * 119.99958 * 186.35015 * 9 8 7 12 12 C 1.47084 * 120.88109 * 354.43985 * 11 9 8 13 13 C 1.53234 * 108.52291 * 129.08546 * 12 11 9 14 14 N 1.46901 * 109.33993 * 53.82583 * 13 12 11 15 15 C 1.46902 * 111.00096 * 172.74656 * 14 13 12 16 16 C 1.50706 * 109.47107 * 294.30627 * 15 14 13 17 17 H 1.07999 * 119.99581 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99951 * 180.02562 * 16 15 14 19 19 N 1.31506 * 119.99972 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99792 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.46940 * 89.99824 * 20 18 16 22 22 H 1.48502 * 109.46874 * 210.00056 * 20 18 16 23 23 H 1.48493 * 109.46977 * 329.99888 * 20 18 16 24 24 C 1.46896 * 111.27241 * 296.89912 * 14 13 12 25 25 C 1.47080 * 120.88084 * 174.71368 * 11 9 8 26 26 C 1.38575 * 120.02418 * 180.27572 * 3 2 1 27 27 H 1.08995 * 109.46724 * 299.99814 * 1 2 3 28 28 H 1.09001 * 109.46959 * 59.99636 * 1 2 3 29 29 H 1.09000 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.95792 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.94000 * 180.02562 * 5 4 3 32 32 H 1.08005 * 119.97973 * 179.97438 * 6 5 4 33 33 H 0.97000 * 120.00360 * 219.66899 * 8 7 6 34 34 H 1.09000 * 109.62123 * 248.79494 * 12 11 9 35 35 H 1.09000 * 109.62958 * 9.37345 * 12 11 9 36 36 H 1.08993 * 109.49510 * 293.86976 * 13 12 11 37 37 H 1.08998 * 109.49345 * 173.78642 * 13 12 11 38 38 H 1.08993 * 109.47199 * 54.30028 * 15 14 13 39 39 H 1.08996 * 109.46900 * 174.30712 * 15 14 13 40 40 H 0.97006 * 120.00239 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.48957 * 303.13886 * 24 14 13 42 42 H 1.08998 * 109.49506 * 183.06219 * 24 14 13 43 43 H 1.08997 * 109.63042 * 350.62597 * 25 11 9 44 44 H 1.08999 * 109.62716 * 111.20395 * 25 11 9 45 45 H 1.08002 * 120.05847 * 0.02615 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2905 2.3753 0.0005 5 6 1.9163 3.6071 0.0011 6 6 3.2958 3.6840 0.0005 7 6 4.0569 2.5222 0.0000 8 7 5.4537 2.6000 0.0000 9 6 6.0765 3.5341 0.7456 10 16 5.1722 4.5177 1.8160 11 7 7.4113 3.6938 0.6486 12 6 8.2231 2.7817 -0.1713 13 6 9.1010 3.6193 -1.1071 14 7 9.8670 4.5910 -0.3154 15 6 10.8468 5.2964 -1.1523 16 6 11.8867 4.3204 -1.6394 17 1 11.8259 3.2802 -1.3553 18 6 12.9160 4.7555 -2.4468 19 7 12.9902 6.0222 -2.7924 20 14 14.2053 3.5458 -3.0500 21 1 13.7690 2.9615 -4.3436 22 1 15.4980 4.2523 -3.2368 23 1 14.3737 2.4619 -2.0490 24 6 8.9784 5.5401 0.3683 25 6 8.0954 4.7813 1.3646 26 6 3.4299 1.2839 -0.0058 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2119 2.3183 0.0014 31 1 1.3260 4.5116 0.0019 32 1 3.7826 4.6482 0.0005 33 1 5.9739 1.9816 -0.5365 34 1 8.8545 2.1723 0.4752 35 1 7.5691 2.1389 -0.7606 36 1 8.4699 4.1486 -1.8210 37 1 9.7881 2.9650 -1.6437 38 1 10.3395 5.7434 -2.0072 39 1 11.3291 6.0786 -0.5661 40 1 13.7142 6.3284 -3.3608 41 1 8.3490 6.0428 -0.3661 42 1 9.5765 6.2789 0.9017 43 1 7.3571 5.4604 1.7908 44 1 8.7146 4.3640 2.1587 45 1 4.0194 0.3789 -0.0107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865266913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:59 Heat of formation + Delta-G solvation = 17.520030 kcal Electronic energy + Delta-G solvation = -26029.496426 eV Core-core repulsion = 22366.555288 eV Total energy + Delta-G solvation = -3662.941138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.70241 -40.84243 -39.36752 -37.69081 -35.90812 -34.51767 -32.52996 -31.90199 -30.84839 -29.75446 -28.19239 -27.51939 -25.63148 -24.70141 -23.86503 -23.39125 -22.45746 -21.18391 -19.87424 -19.37570 -18.53490 -17.86757 -17.23694 -17.06116 -16.83539 -16.58625 -16.42806 -16.19362 -16.14381 -15.88148 -15.45581 -15.31827 -14.83363 -14.57309 -14.25628 -13.99750 -13.78440 -13.32957 -13.17412 -13.02327 -12.90380 -12.81813 -12.70135 -12.57290 -12.45727 -12.39516 -12.10110 -11.96565 -11.88241 -11.80472 -11.32183 -10.73570 -10.62816 -9.57562 -9.34048 -9.16198 -8.95943 -8.24647 -8.21021 -6.32226 -0.21999 0.47250 0.57166 0.75451 1.33247 1.42428 1.44170 1.54907 1.94723 2.39212 2.49053 2.79467 3.06584 3.14026 3.60676 3.81691 3.84325 3.91530 4.08483 4.10923 4.19480 4.24788 4.27383 4.35753 4.44897 4.45984 4.55591 4.59482 4.70988 4.73062 4.80911 4.82049 4.89203 4.99284 5.13874 5.16705 5.21263 5.28385 5.42464 5.49926 5.58176 5.61956 5.85947 5.98886 6.12151 6.19481 6.46031 6.47392 6.83307 7.38000 8.89272 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020312 B = 0.002348 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.136487 B =11922.706570 C =12779.434855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.124 3.876 4 C -0.200 4.200 5 C -0.076 4.076 6 C -0.125 4.125 7 C 0.158 3.842 8 N -0.621 5.621 9 C 0.577 3.423 10 S -0.699 6.699 11 N -0.549 5.549 12 C 0.103 3.897 13 C 0.052 3.948 14 N -0.537 5.537 15 C 0.208 3.792 16 C -0.521 4.521 17 H 0.071 0.929 18 C 0.001 3.999 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.273 1.273 22 H -0.288 1.288 23 H -0.261 1.261 24 C 0.044 3.956 25 C 0.122 3.878 26 C -0.166 4.166 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.118 0.882 30 H 0.155 0.845 31 H 0.147 0.853 32 H 0.127 0.873 33 H 0.421 0.579 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.019 0.981 37 H 0.097 0.903 38 H -0.039 1.039 39 H 0.008 0.992 40 H 0.264 0.736 41 H 0.020 0.980 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.098 0.902 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.068 -12.474 3.636 26.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.077 3.923 4 C -0.220 4.220 5 C -0.096 4.096 6 C -0.147 4.147 7 C 0.064 3.936 8 N -0.250 5.250 9 C 0.216 3.784 10 S -0.568 6.568 11 N -0.254 5.254 12 C -0.021 4.021 13 C -0.078 4.078 14 N -0.262 5.262 15 C 0.082 3.918 16 C -0.559 4.559 17 H 0.090 0.910 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.794 3.206 21 H -0.199 1.199 22 H -0.214 1.214 23 H -0.186 1.186 24 C -0.085 4.085 25 C 0.000 4.000 26 C -0.187 4.187 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.136 0.864 30 H 0.172 0.828 31 H 0.164 0.836 32 H 0.145 0.855 33 H 0.265 0.735 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.037 0.963 37 H 0.115 0.885 38 H -0.021 1.021 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.109 0.891 43 H 0.137 0.863 44 H 0.116 0.884 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -23.054 -12.159 4.581 26.464 hybrid contribution 1.168 -0.045 -1.820 2.163 sum -21.887 -12.205 2.761 25.211 Atomic orbital electron populations 1.23357 0.76270 1.05572 1.02403 1.86028 1.23542 1.26395 1.88823 1.18648 0.91481 0.85004 0.97121 1.21536 1.01363 0.91533 1.07534 1.20981 0.93245 0.98292 0.97061 1.21330 0.94695 0.98173 1.00552 1.17097 0.80207 0.93924 1.02327 1.42191 1.06099 1.32944 1.43760 1.21904 0.85202 0.86134 0.85114 1.93413 1.65191 1.53550 1.44636 1.47569 1.02894 1.30055 1.44899 1.22411 0.93805 0.91740 0.94130 1.22329 0.95524 0.95791 0.94113 1.62052 1.15254 1.17201 1.31691 1.19380 0.89714 0.93381 0.89317 1.21440 1.09286 0.95895 1.29305 0.91041 1.25922 1.00350 0.96978 0.96502 1.70086 1.33633 1.16430 1.37357 0.85382 0.77739 0.78708 0.78787 1.19857 1.21370 1.18558 1.22467 0.94396 0.94936 0.96681 1.22344 0.95411 0.88362 0.93928 1.20051 0.92747 0.96551 1.09388 0.91755 0.91419 0.86406 0.82788 0.83574 0.85518 0.73541 0.87273 0.87033 0.96274 0.88493 1.02099 0.97416 0.92760 0.96216 0.89052 0.86275 0.88428 0.83905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.74 10.49 -92.34 -0.97 -6.71 16 3 C 0.12 2.38 6.68 22.49 0.15 2.53 16 4 C -0.20 -3.39 9.04 22.39 0.20 -3.19 16 5 C -0.08 -1.49 10.03 22.24 0.22 -1.27 16 6 C -0.13 -3.08 7.85 22.41 0.18 -2.90 16 7 C 0.16 3.61 5.96 38.15 0.23 3.84 16 8 N -0.62 -13.22 5.24 -190.03 -1.00 -14.22 16 9 C 0.58 15.44 7.48 179.05 1.34 16.78 16 10 S -0.70 -23.67 24.23 -56.49 -1.37 -25.04 16 11 N -0.55 -13.96 3.01 -705.95 -2.12 -16.09 16 12 C 0.10 2.26 6.59 86.35 0.57 2.83 16 13 C 0.05 1.63 5.46 86.38 0.47 2.10 16 14 N -0.54 -20.46 4.62 -899.85 -4.16 -24.62 16 15 C 0.21 10.31 4.72 85.56 0.40 10.71 16 16 C -0.52 -27.20 8.41 25.60 0.22 -26.98 16 17 H 0.07 3.54 7.13 -2.91 -0.02 3.52 16 18 C 0.00 0.04 5.46 84.66 0.46 0.50 16 19 N -0.93 -54.29 13.29 21.45 0.28 -54.00 16 20 Si 0.97 41.82 29.54 68.60 2.03 43.85 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 22 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 C 0.04 1.47 5.62 86.38 0.49 1.95 16 25 C 0.12 3.39 6.45 86.35 0.56 3.94 16 26 C -0.17 -3.36 9.91 22.49 0.22 -3.14 16 27 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 28 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 29 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.15 1.67 6.29 -2.91 -0.02 1.65 16 31 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.13 3.66 6.07 -7.56 -0.05 3.61 16 33 H 0.42 6.36 6.33 -92.71 -0.59 5.77 16 34 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.11 1.62 5.64 -2.39 -0.01 1.60 16 36 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.10 3.24 6.67 -2.39 -0.02 3.22 16 38 H -0.04 -2.13 8.12 -2.39 -0.02 -2.15 16 39 H 0.01 0.42 7.97 -2.39 -0.02 0.40 16 40 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 41 H 0.02 0.69 8.14 -2.39 -0.02 0.68 16 42 H 0.09 2.99 7.99 -2.39 -0.02 2.97 16 43 H 0.12 3.50 6.10 -2.63 -0.02 3.48 16 44 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -70.35 369.96 -0.09 -70.44 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.39 Total: 17.42 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 6.82 Total: 8.97 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -6.99 Total: -108.92 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.97 Total: -6.71 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: -23.67 SS G_CDS: -1.37 Total: -25.04 kcal Total: -70.35 -0.09 -70.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865266913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.959 kcal (2) G-P(sol) polarization free energy of solvation -70.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds