Wall clock time and date at job start Tue Mar 31 2020 18:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35975 * 116.99617 * 2 1 4 4 C 1.38712 * 119.98860 * 359.72709 * 3 2 1 5 5 C 1.38092 * 120.01640 * 179.72559 * 4 3 2 6 6 C 1.38855 * 119.98028 * 0.54847 * 5 4 3 7 7 N 1.40105 * 120.01260 * 179.74543 * 6 5 4 8 8 C 1.34773 * 119.99854 * 220.97161 * 7 6 5 9 9 S 1.71201 * 120.00068 * 5.94402 * 8 7 6 10 10 N 1.34773 * 119.99797 * 185.94597 * 8 7 6 11 11 C 1.47080 * 120.88314 * 5.29769 * 10 8 7 12 12 C 1.53700 * 108.27369 * 128.75732 * 11 10 8 13 13 N 1.46898 * 109.25769 * 54.08529 * 12 11 10 14 14 C 1.46899 * 110.99843 * 172.60323 * 13 12 11 15 15 C 1.50701 * 109.47330 * 294.30095 * 14 13 12 16 16 H 1.07992 * 119.99806 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99821 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00054 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00104 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47184 * 90.00072 * 19 17 15 21 21 H 1.48503 * 109.47094 * 210.00167 * 19 17 15 22 22 H 1.48496 * 109.47134 * 330.00176 * 19 17 15 23 23 C 1.46891 * 111.26962 * 296.75470 * 13 12 11 24 24 C 1.47080 * 120.88280 * 185.58406 * 10 8 7 25 25 C 1.38840 * 119.97220 * 359.72746 * 6 5 4 26 26 C 1.38095 * 119.98312 * 359.97438 * 25 6 5 27 27 H 1.09004 * 109.47088 * 299.99828 * 1 2 3 28 28 H 1.08995 * 109.47082 * 60.00036 * 1 2 3 29 29 H 1.08999 * 109.46996 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.99349 * 359.97188 * 4 3 2 31 31 H 1.08001 * 120.01122 * 180.27250 * 5 4 3 32 32 H 0.97001 * 119.99961 * 40.97119 * 7 6 5 33 33 H 1.08996 * 109.63216 * 248.52586 * 11 10 8 34 34 H 1.08998 * 109.62505 * 9.10788 * 11 10 8 35 35 H 1.08999 * 109.64692 * 294.07778 * 12 11 10 36 36 H 1.09008 * 109.41816 * 173.95132 * 12 11 10 37 37 H 1.09001 * 109.46924 * 54.30786 * 14 13 12 38 38 H 1.09006 * 109.46675 * 174.30084 * 14 13 12 39 39 H 0.97002 * 120.00084 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.49619 * 303.14414 * 23 13 12 41 41 H 1.09001 * 109.49852 * 183.05954 * 23 13 12 42 42 H 1.09009 * 109.62715 * 350.89407 * 24 10 8 43 43 H 1.08998 * 109.63189 * 111.47150 * 24 10 8 44 44 H 1.08002 * 120.01032 * 179.97438 * 25 6 5 45 45 H 1.08003 * 119.99520 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2905 2.3747 -0.0057 5 6 1.9167 3.6055 0.0000 6 6 3.3034 3.6785 0.0000 7 7 3.9394 4.9268 0.0004 8 6 5.0305 5.1274 -0.7649 9 16 5.5500 3.9101 -1.8508 10 7 5.7126 6.2863 -0.6753 11 6 5.3541 7.2975 0.3308 12 6 6.6280 7.6880 1.0969 13 7 7.6608 8.1047 0.1390 14 6 8.8335 8.6519 0.8343 15 6 8.4503 9.9285 1.5375 16 1 7.4369 10.2963 1.4746 17 6 9.3933 10.6262 2.2619 18 7 9.0588 11.7400 2.8760 19 14 11.1461 9.9896 2.3712 20 1 11.9480 10.5533 1.2557 21 1 11.7426 10.4018 3.6672 22 1 11.1412 8.5076 2.2777 23 6 8.0434 6.9976 -0.7473 24 6 6.8314 6.5762 -1.5850 25 6 4.0592 2.5139 -0.0001 26 6 3.4316 1.2838 0.0004 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.2120 2.3178 -0.0106 31 1 1.3282 4.5110 0.0000 32 1 3.5945 5.6467 0.5515 33 1 4.9373 8.1747 -0.1640 34 1 4.6219 6.8817 1.0230 35 1 6.9872 6.8335 1.6704 36 1 6.4054 8.5131 1.7737 37 1 9.1929 7.9279 1.5656 38 1 9.6216 8.8584 0.1100 39 1 9.7223 12.2311 3.3854 40 1 8.3830 6.1526 -0.1482 41 1 8.8472 7.3217 -1.4082 42 1 7.0764 5.6831 -2.1602 43 1 6.5539 7.3854 -2.2605 44 1 5.1378 2.5699 -0.0005 45 1 4.0194 0.3777 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865267393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:03 Heat of formation + Delta-G solvation = 39.701230 kcal Electronic energy + Delta-G solvation = -26000.702465 eV Core-core repulsion = 22338.723177 eV Total energy + Delta-G solvation = -3661.979289 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.73710 -39.91068 -38.43998 -36.58175 -34.61717 -32.56920 -31.39855 -31.31211 -29.86156 -28.76225 -27.46285 -26.16540 -24.33537 -23.50959 -22.93878 -21.74562 -21.30843 -19.95035 -18.73752 -18.34628 -17.91506 -16.97065 -16.36082 -16.12907 -15.98783 -15.30432 -14.87635 -14.78905 -14.70933 -14.70129 -14.09254 -14.00472 -13.81521 -13.68655 -13.17841 -13.02225 -12.61962 -12.47552 -12.40458 -12.20210 -11.77351 -11.57835 -11.35667 -11.30700 -11.22639 -11.10649 -10.89227 -10.69881 -10.45708 -10.04181 -9.59114 -9.41473 -9.24104 -8.71000 -8.13151 -7.76590 -7.64112 -7.12348 -6.19767 -4.18927 0.83655 1.18896 1.56085 1.83538 2.47199 2.97401 3.06603 3.19253 3.27349 3.28763 3.57705 4.29177 4.34025 4.50167 4.65549 4.70543 4.76807 4.81930 4.97224 4.97975 5.05003 5.13180 5.13459 5.18615 5.26955 5.31376 5.43132 5.48639 5.66908 5.76247 5.82778 5.96186 6.03822 6.07362 6.09943 6.15054 6.21985 6.39631 6.52084 6.63429 6.74045 6.79226 7.06219 7.17372 7.37344 7.60384 7.76021 8.45808 8.85343 9.41209 10.92742 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025167 B = 0.002264 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.295695 B =12365.457385 C =12711.057055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.127 3.873 4 C -0.204 4.204 5 C -0.086 4.086 6 C 0.098 3.902 7 N -0.636 5.636 8 C 0.563 3.437 9 S -0.647 6.647 10 N -0.552 5.552 11 C 0.094 3.906 12 C 0.053 3.947 13 N -0.527 5.527 14 C 0.163 3.837 15 C -0.516 4.516 16 H 0.081 0.919 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.875 3.125 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.268 1.268 23 C 0.039 3.961 24 C 0.107 3.893 25 C -0.032 4.032 26 C -0.142 4.142 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.406 0.594 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.030 0.970 36 H 0.110 0.890 37 H -0.009 1.009 38 H 0.029 0.971 39 H 0.265 0.735 40 H 0.033 0.967 41 H 0.091 0.909 42 H 0.126 0.874 43 H 0.086 0.914 44 H 0.151 0.849 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.636 -17.808 -4.059 24.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.224 4.224 5 C -0.107 4.107 6 C 0.004 3.996 7 N -0.264 5.264 8 C 0.204 3.796 9 S -0.514 6.514 10 N -0.259 5.259 11 C -0.031 4.031 12 C -0.076 4.076 13 N -0.252 5.252 14 C 0.037 3.963 15 C -0.554 4.554 16 H 0.099 0.901 17 C -0.132 4.132 18 N -0.535 5.535 19 Si 0.702 3.298 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.193 1.193 23 C -0.091 4.091 24 C -0.015 4.015 25 C -0.054 4.054 26 C -0.163 4.163 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.148 0.852 31 H 0.144 0.856 32 H 0.246 0.754 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.048 0.952 36 H 0.128 0.872 37 H 0.009 0.991 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.109 0.891 42 H 0.144 0.856 43 H 0.104 0.896 44 H 0.169 0.831 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.238 -18.130 -4.942 24.836 hybrid contribution 0.561 0.508 1.444 1.630 sum -15.677 -17.622 -3.499 23.844 Atomic orbital electron populations 1.23049 0.78549 1.03869 1.01341 1.86097 1.21259 1.27005 1.88725 1.19076 0.92377 0.84027 0.96360 1.20883 0.99831 0.91511 1.10184 1.20603 0.92101 0.97892 1.00116 1.17290 0.91005 0.83590 1.07668 1.42298 1.26432 1.13872 1.43771 1.22358 0.82837 0.88481 0.85912 1.93311 1.77797 1.37598 1.42690 1.47588 1.30736 1.14118 1.33417 1.22463 0.98998 0.91310 0.90350 1.22413 0.90578 1.00496 0.94157 1.61946 1.12943 1.29155 1.21148 1.20192 0.87890 0.95406 0.92812 1.20958 0.99028 1.05488 1.29935 0.90129 1.24892 0.98615 0.94658 0.95013 1.69878 1.34746 1.15762 1.33106 0.86869 0.85371 0.79694 0.77878 1.19988 1.21100 1.19285 1.22486 0.96351 0.93476 0.96763 1.22528 0.83717 1.03725 0.91540 1.21236 1.01685 0.89731 0.92739 1.20251 0.91032 0.98319 1.06678 0.92682 0.92626 0.88334 0.85186 0.85622 0.75392 0.88727 0.90532 0.95160 0.87199 0.99147 0.95298 0.92486 0.94833 0.89122 0.85650 0.89572 0.83145 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.09 10.50 -19.66 -0.21 -3.30 16 3 C 0.13 1.34 6.69 -39.23 -0.26 1.07 16 4 C -0.20 -1.85 9.03 -39.46 -0.36 -2.21 16 5 C -0.09 -0.81 9.96 -39.41 -0.39 -1.20 16 6 C 0.10 1.10 5.93 -83.62 -0.50 0.61 16 7 N -0.64 -6.88 5.18 -11.37 -0.06 -6.94 16 8 C 0.56 7.58 7.48 -86.92 -0.65 6.93 16 9 S -0.65 -10.74 24.28 -107.50 -2.61 -13.35 16 10 N -0.55 -7.18 3.00 -174.20 -0.52 -7.70 16 11 C 0.09 1.12 6.51 -3.36 -0.02 1.09 16 12 C 0.05 0.84 5.47 -3.46 -0.02 0.83 16 13 N -0.53 -9.66 4.62 -235.46 -1.09 -10.74 16 14 C 0.16 3.62 3.79 -4.98 -0.02 3.60 16 15 C -0.52 -13.53 8.96 -34.44 -0.31 -13.84 16 16 H 0.08 2.27 7.37 -52.49 -0.39 1.89 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -26.11 13.96 55.43 0.77 -25.33 16 19 Si 0.87 20.51 27.47 -169.99 -4.67 15.84 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 23 C 0.04 0.60 5.62 -3.70 -0.02 0.58 16 24 C 0.11 1.46 6.51 -3.60 -0.02 1.44 16 25 C -0.03 -0.39 7.85 -39.41 -0.31 -0.70 16 26 C -0.14 -1.62 9.98 -39.45 -0.39 -2.01 16 27 H 0.05 0.25 7.67 -51.93 -0.40 -0.15 16 28 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.13 0.85 6.29 -52.48 -0.33 0.52 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.41 3.33 6.49 -40.82 -0.27 3.06 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.08 0.68 5.86 -51.93 -0.30 0.38 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.11 1.94 6.67 -51.92 -0.35 1.60 16 37 H -0.01 -0.21 7.18 -51.93 -0.37 -0.58 16 38 H 0.03 0.65 7.40 -51.93 -0.38 0.26 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 1.33 7.99 -51.93 -0.41 0.91 16 42 H 0.13 1.78 5.99 -50.65 -0.30 1.48 16 43 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.15 2.08 6.19 -48.19 -0.30 1.78 16 45 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -32.33 366.72 -11.56 -43.89 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.33 Total: 2.94 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.38 Total: -0.84 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.90 Total: -50.72 kcal Atomic # 8 Polarization: -3.09 SS G_CDS: -0.21 Total: -3.30 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Atomic # 16 Polarization: -10.74 SS G_CDS: -2.61 Total: -13.35 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.33 -11.56 -43.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865267393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.591 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds