Wall clock time and date at job start Tue Mar 31 2020 18:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34225 * 117.00371 * 2 1 4 4 O 1.20832 * 119.99882 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00214 * 179.97438 * 3 2 1 6 6 C 1.53009 * 109.46923 * 179.97438 * 5 3 2 7 7 N 1.46493 * 109.46739 * 180.02562 * 6 5 3 8 8 C 1.37096 * 120.00643 * 269.99934 * 7 6 5 9 9 H 1.08005 * 120.00091 * 145.30607 * 8 7 6 10 10 C 1.38950 * 119.99903 * 325.31493 * 8 7 6 11 11 N 1.31416 * 119.99651 * 337.26054 * 10 8 7 12 12 Si 1.86800 * 120.00102 * 157.26207 * 10 8 7 13 13 H 1.48497 * 109.47112 * 90.00098 * 12 10 8 14 14 H 1.48511 * 109.46884 * 210.00024 * 12 10 8 15 15 H 1.48494 * 109.47001 * 329.99507 * 12 10 8 16 16 C 1.34788 * 119.99886 * 90.00242 * 7 6 5 17 17 O 1.21290 * 119.99971 * 4.88799 * 16 7 6 18 18 C 1.50703 * 119.99758 * 184.88354 * 16 7 6 19 19 C 1.53000 * 109.46740 * 177.72273 * 18 16 7 20 20 C 1.50691 * 109.47167 * 179.97438 * 19 18 16 21 21 C 1.38292 * 119.97528 * 270.02625 * 20 19 18 22 22 C 1.38251 * 120.11090 * 180.02562 * 21 20 19 23 23 C 1.38166 * 120.05667 * 359.67581 * 22 21 20 24 24 C 1.38718 * 119.94229 * 0.57584 * 23 22 21 25 25 O 1.35895 * 120.05527 * 179.72022 * 24 23 22 26 26 C 1.42907 * 117.00068 * 359.72933 * 25 24 23 27 27 C 1.38132 * 119.97134 * 90.00145 * 20 19 18 28 28 H 1.08994 * 109.47321 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47082 * 300.00061 * 1 2 3 30 30 H 1.09001 * 109.46722 * 59.99791 * 1 2 3 31 31 H 1.08998 * 109.46635 * 60.00793 * 5 3 2 32 32 H 1.08995 * 109.47282 * 300.00288 * 5 3 2 33 33 H 1.08998 * 109.46728 * 60.00960 * 6 5 3 34 34 H 1.08997 * 109.47009 * 300.00517 * 6 5 3 35 35 H 0.97002 * 119.99796 * 185.01941 * 11 10 8 36 36 H 1.08997 * 109.47072 * 57.72820 * 18 16 7 37 37 H 1.09000 * 109.47191 * 297.72188 * 18 16 7 38 38 H 1.09010 * 109.47006 * 59.99834 * 19 18 16 39 39 H 1.08995 * 109.47146 * 300.00379 * 19 18 16 40 40 H 1.07996 * 119.94006 * 359.97438 * 21 20 19 41 41 H 1.08001 * 119.96607 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.02749 * 180.29404 * 23 22 21 43 43 H 1.08996 * 109.47532 * 59.99373 * 26 25 24 44 44 H 1.09000 * 109.47184 * 180.02562 * 26 25 24 45 45 H 1.09009 * 109.46706 * 299.99935 * 26 25 24 46 46 H 1.07995 * 120.02779 * 0.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0002 2.7421 -0.0002 7 7 5.4631 2.8186 -0.0002 8 6 6.1478 2.8551 1.1869 9 1 7.1104 2.3724 1.2703 10 6 5.6032 3.5129 2.2831 11 7 4.7005 4.4511 2.1044 12 14 6.1543 3.0637 4.0105 13 1 7.3148 3.9068 4.3948 14 1 5.0378 3.2948 4.9620 15 1 6.5482 1.6324 4.0478 16 6 6.1361 2.8533 -1.1676 17 8 5.5291 2.9106 -2.2161 18 6 7.6428 2.8209 -1.1699 19 6 8.1504 2.8134 -2.6132 20 6 9.6570 2.7816 -2.6157 21 6 10.3730 3.9648 -2.6136 22 6 11.7553 3.9389 -2.6164 23 6 12.4248 2.7303 -2.6144 24 6 11.7089 1.5422 -2.6218 25 8 12.3651 0.3522 -2.6257 26 6 13.7934 0.3989 -2.6278 27 6 10.3217 1.5708 -2.6194 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9563 0.7806 -0.8892 32 1 3.9557 0.7808 0.8907 33 1 3.6102 3.2366 0.8894 34 1 3.6108 3.2356 -0.8906 35 1 4.3738 4.9604 2.8626 36 1 7.9876 1.9221 -0.6588 37 1 8.0259 3.7017 -0.6546 38 1 7.8054 3.7123 -3.1244 39 1 7.7672 1.9327 -3.1286 40 1 9.8515 4.9104 -2.6107 41 1 12.3121 4.8643 -2.6152 42 1 13.5046 2.7107 -2.6118 43 1 14.1412 0.9222 -1.7373 44 1 14.1901 -0.6164 -2.6313 45 1 14.1383 0.9265 -3.5172 46 1 9.7621 0.6471 -2.6211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871339546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:29 Heat of formation + Delta-G solvation = -138.227026 kcal Electronic energy + Delta-G solvation = -28349.385070 eV Core-core repulsion = 24204.644611 eV Total energy + Delta-G solvation = -4144.740459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.12161 -40.03163 -38.68681 -37.57399 -36.17945 -35.02139 -33.30169 -31.95319 -30.88066 -30.48789 -29.00227 -27.51429 -27.31098 -25.05320 -24.66806 -22.71153 -22.36874 -20.71559 -20.10679 -19.06254 -17.69649 -17.38332 -16.57920 -16.26837 -16.23384 -16.12410 -15.91034 -15.79560 -15.73147 -14.75882 -14.41628 -14.29583 -13.91898 -13.73304 -13.54948 -13.22611 -13.05888 -12.79090 -12.53010 -12.36107 -12.19410 -11.94880 -11.85840 -11.71129 -11.47579 -11.35373 -11.21633 -11.01369 -10.94322 -10.75478 -10.59677 -10.53200 -10.43071 -10.31131 -10.06292 -9.98276 -9.21247 -8.74332 -8.42381 -8.11743 -7.58656 -6.41115 -4.08994 1.41429 1.54188 2.67988 3.05457 3.09079 3.19941 3.21953 3.22799 3.83583 3.86592 4.09579 4.68912 4.77916 4.90116 4.96584 4.97776 5.00502 5.21054 5.25145 5.28958 5.31523 5.34591 5.45420 5.50300 5.62125 5.64561 5.81617 5.83494 5.85955 5.92543 6.09717 6.23857 6.29456 6.33634 6.43195 6.48247 6.56508 6.73726 6.74601 6.83124 6.91054 6.93808 7.31610 7.41109 7.49670 7.86677 8.19282 8.32335 9.03162 9.45556 9.88869 10.60447 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011324 B = 0.002781 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.986027 B =10064.411559 C =11155.099747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.123 4.123 6 C 0.122 3.878 7 N -0.439 5.439 8 C -0.349 4.349 9 H 0.094 0.906 10 C 0.046 3.954 11 N -0.853 5.853 12 Si 0.911 3.089 13 H -0.276 1.276 14 H -0.282 1.282 15 H -0.267 1.267 16 C 0.471 3.529 17 O -0.605 6.605 18 C -0.111 4.111 19 C -0.067 4.067 20 C -0.030 4.030 21 C -0.152 4.152 22 C -0.081 4.081 23 C -0.220 4.220 24 C 0.124 3.876 25 O -0.319 6.319 26 C 0.029 3.971 27 C -0.149 4.149 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.066 0.934 35 H 0.272 0.728 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.054 0.946 44 H 0.097 0.903 45 H 0.053 0.947 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.724 -6.723 -4.735 12.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.162 4.162 6 C -0.002 4.002 7 N -0.157 5.157 8 C -0.477 4.477 9 H 0.111 0.889 10 C -0.161 4.161 11 N -0.488 5.488 12 Si 0.737 3.263 13 H -0.202 1.202 14 H -0.207 1.207 15 H -0.192 1.192 16 C 0.261 3.739 17 O -0.491 6.491 18 C -0.151 4.151 19 C -0.104 4.104 20 C -0.030 4.030 21 C -0.170 4.170 22 C -0.099 4.099 23 C -0.238 4.238 24 C 0.079 3.921 25 O -0.233 6.233 26 C -0.066 4.066 27 C -0.167 4.167 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.072 0.928 44 H 0.115 0.885 45 H 0.071 0.929 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.936 -6.487 -5.096 12.162 hybrid contribution 0.382 0.054 1.131 1.195 sum 9.318 -6.434 -3.965 11.997 Atomic orbital electron populations 1.23164 0.77400 1.03009 1.02330 1.86538 1.22726 1.34447 1.84677 1.24090 0.92412 0.80879 0.71743 1.90652 1.67267 1.36221 1.45015 1.21894 0.85776 1.03431 1.05103 1.21220 0.82419 0.90945 1.05644 1.43406 1.04390 1.63056 1.04876 1.19418 1.05334 1.35743 0.87163 0.88882 1.25365 0.96419 0.94074 1.00265 1.69855 1.29294 1.17522 1.32178 0.86194 0.78430 0.79508 0.82209 1.20154 1.20705 1.19168 1.20475 0.89547 0.79995 0.83907 1.90534 1.70509 1.55980 1.32055 1.21317 0.94025 1.03984 0.95783 1.20421 0.88344 1.04109 0.97569 1.19903 0.96377 0.91961 0.94755 1.21050 0.93799 0.98210 1.03924 1.20891 0.94387 0.97007 0.97590 1.21132 0.99710 0.92420 1.10568 1.19004 0.92010 0.84252 0.96846 1.86068 1.20329 1.27968 1.88944 1.23007 0.78767 1.03654 1.01193 1.20351 0.90785 0.98794 1.06791 0.88633 0.92179 0.92182 0.88630 0.87734 0.86404 0.91554 0.91740 0.90149 0.89314 0.90236 0.90577 0.85692 0.86040 0.85973 0.92762 0.88489 0.92875 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.05 10.56 -39.25 -0.41 -6.47 16 3 C 0.47 9.06 7.96 36.01 0.29 9.34 16 4 O -0.50 -11.12 15.73 -18.76 -0.30 -11.42 16 5 C -0.12 -2.46 6.14 -27.88 -0.17 -2.63 16 6 C 0.12 2.93 4.34 -4.04 -0.02 2.91 16 7 N -0.44 -10.66 2.54 -114.81 -0.29 -10.95 16 8 C -0.35 -8.45 8.72 -14.93 -0.13 -8.58 16 9 H 0.09 2.13 6.95 -52.48 -0.36 1.77 16 10 C 0.05 1.12 4.95 -17.47 -0.09 1.04 16 11 N -0.85 -22.37 11.34 55.50 0.63 -21.74 16 12 Si 0.91 18.92 29.61 -169.99 -5.03 13.88 16 13 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 14 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 15 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 16 C 0.47 10.97 7.63 -10.98 -0.08 10.89 16 17 O -0.60 -15.35 15.54 5.55 0.09 -15.27 16 18 C -0.11 -2.11 4.31 -27.88 -0.12 -2.23 16 19 C -0.07 -1.11 4.63 -27.89 -0.13 -1.24 16 20 C -0.03 -0.44 5.13 -104.65 -0.54 -0.98 16 21 C -0.15 -2.07 9.70 -39.56 -0.38 -2.45 16 22 C -0.08 -0.97 10.04 -39.60 -0.40 -1.37 16 23 C -0.22 -2.61 9.04 -39.43 -0.36 -2.97 16 24 C 0.12 1.67 6.69 -39.21 -0.26 1.41 16 25 O -0.32 -4.00 10.50 -19.41 -0.20 -4.20 16 26 C 0.03 0.23 9.81 101.05 0.99 1.22 16 27 C -0.15 -2.15 9.64 -39.43 -0.38 -2.53 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 32 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 33 H 0.12 3.09 5.32 -51.93 -0.28 2.81 16 34 H 0.07 1.71 7.32 -51.93 -0.38 1.33 16 35 H 0.27 6.77 8.32 -40.82 -0.34 6.43 16 36 H 0.08 1.45 7.68 -51.93 -0.40 1.05 16 37 H 0.09 1.71 8.09 -51.93 -0.42 1.29 16 38 H 0.08 1.37 8.02 -51.92 -0.42 0.95 16 39 H 0.08 1.28 8.06 -51.93 -0.42 0.86 16 40 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 41 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 42 H 0.12 1.14 6.30 -52.49 -0.33 0.81 16 43 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 44 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.05 0.36 7.67 -51.92 -0.40 -0.03 16 46 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 390.82 15.07 5.89 5.89 Total: -1.00 -30.97 390.82 -7.09 -38.06 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.74 Total: 8.88 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -0.71 Total: 3.33 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.34 Total: -32.69 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.83 Total: -37.35 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.97 -7.09 -38.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.167 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds