Wall clock time and date at job start Tue Mar 31 2020 18:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34225 * 117.00371 * 2 1 4 4 O 1.20832 * 119.99882 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00214 * 179.97438 * 3 2 1 6 6 C 1.53009 * 109.46923 * 179.97438 * 5 3 2 7 7 N 1.46493 * 109.46739 * 180.02562 * 6 5 3 8 8 C 1.37096 * 120.00643 * 269.99934 * 7 6 5 9 9 H 1.08005 * 120.00091 * 145.30607 * 8 7 6 10 10 C 1.38950 * 119.99903 * 325.31493 * 8 7 6 11 11 N 1.31416 * 119.99651 * 337.26054 * 10 8 7 12 12 Si 1.86800 * 120.00102 * 157.26207 * 10 8 7 13 13 H 1.48497 * 109.47112 * 90.00098 * 12 10 8 14 14 H 1.48511 * 109.46884 * 210.00024 * 12 10 8 15 15 H 1.48494 * 109.47001 * 329.99507 * 12 10 8 16 16 C 1.34788 * 119.99886 * 90.00242 * 7 6 5 17 17 O 1.21290 * 119.99971 * 4.88799 * 16 7 6 18 18 C 1.50703 * 119.99758 * 184.88354 * 16 7 6 19 19 C 1.53000 * 109.46740 * 177.72273 * 18 16 7 20 20 C 1.50691 * 109.47167 * 179.97438 * 19 18 16 21 21 C 1.38292 * 119.97528 * 270.02625 * 20 19 18 22 22 C 1.38251 * 120.11090 * 180.02562 * 21 20 19 23 23 C 1.38166 * 120.05667 * 359.67581 * 22 21 20 24 24 C 1.38718 * 119.94229 * 0.57584 * 23 22 21 25 25 O 1.35895 * 120.05527 * 179.72022 * 24 23 22 26 26 C 1.42907 * 117.00068 * 359.72933 * 25 24 23 27 27 C 1.38132 * 119.97134 * 90.00145 * 20 19 18 28 28 H 1.08994 * 109.47321 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47082 * 300.00061 * 1 2 3 30 30 H 1.09001 * 109.46722 * 59.99791 * 1 2 3 31 31 H 1.08998 * 109.46635 * 60.00793 * 5 3 2 32 32 H 1.08995 * 109.47282 * 300.00288 * 5 3 2 33 33 H 1.08998 * 109.46728 * 60.00960 * 6 5 3 34 34 H 1.08997 * 109.47009 * 300.00517 * 6 5 3 35 35 H 0.97002 * 119.99796 * 185.01941 * 11 10 8 36 36 H 1.08997 * 109.47072 * 57.72820 * 18 16 7 37 37 H 1.09000 * 109.47191 * 297.72188 * 18 16 7 38 38 H 1.09010 * 109.47006 * 59.99834 * 19 18 16 39 39 H 1.08995 * 109.47146 * 300.00379 * 19 18 16 40 40 H 1.07996 * 119.94006 * 359.97438 * 21 20 19 41 41 H 1.08001 * 119.96607 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.02749 * 180.29404 * 23 22 21 43 43 H 1.08996 * 109.47532 * 59.99373 * 26 25 24 44 44 H 1.09000 * 109.47184 * 180.02562 * 26 25 24 45 45 H 1.09009 * 109.46706 * 299.99935 * 26 25 24 46 46 H 1.07995 * 120.02779 * 0.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0002 2.7421 -0.0002 7 7 5.4631 2.8186 -0.0002 8 6 6.1478 2.8551 1.1869 9 1 7.1104 2.3724 1.2703 10 6 5.6032 3.5129 2.2831 11 7 4.7005 4.4511 2.1044 12 14 6.1543 3.0637 4.0105 13 1 7.3148 3.9068 4.3948 14 1 5.0378 3.2948 4.9620 15 1 6.5482 1.6324 4.0478 16 6 6.1361 2.8533 -1.1676 17 8 5.5291 2.9106 -2.2161 18 6 7.6428 2.8209 -1.1699 19 6 8.1504 2.8134 -2.6132 20 6 9.6570 2.7816 -2.6157 21 6 10.3730 3.9648 -2.6136 22 6 11.7553 3.9389 -2.6164 23 6 12.4248 2.7303 -2.6144 24 6 11.7089 1.5422 -2.6218 25 8 12.3651 0.3522 -2.6257 26 6 13.7934 0.3989 -2.6278 27 6 10.3217 1.5708 -2.6194 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9563 0.7806 -0.8892 32 1 3.9557 0.7808 0.8907 33 1 3.6102 3.2366 0.8894 34 1 3.6108 3.2356 -0.8906 35 1 4.3738 4.9604 2.8626 36 1 7.9876 1.9221 -0.6588 37 1 8.0259 3.7017 -0.6546 38 1 7.8054 3.7123 -3.1244 39 1 7.7672 1.9327 -3.1286 40 1 9.8515 4.9104 -2.6107 41 1 12.3121 4.8643 -2.6152 42 1 13.5046 2.7107 -2.6118 43 1 14.1412 0.9222 -1.7373 44 1 14.1901 -0.6164 -2.6313 45 1 14.1383 0.9265 -3.5172 46 1 9.7621 0.6471 -2.6211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871339546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:28 Heat of formation + Delta-G solvation = -154.758402 kcal Electronic energy + Delta-G solvation = -28350.101924 eV Core-core repulsion = 24204.644611 eV Total energy + Delta-G solvation = -4145.457313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.57655 -41.08969 -40.43311 -38.60056 -37.67270 -36.85756 -34.63740 -33.79688 -32.55589 -31.51025 -30.24736 -28.70272 -28.06821 -26.92108 -26.10097 -24.19419 -23.39968 -21.92997 -21.55275 -20.91773 -19.00566 -18.72886 -18.23298 -17.80456 -17.64047 -17.42000 -17.20227 -16.89960 -16.58847 -16.35768 -16.06761 -15.97813 -15.19739 -15.00917 -14.80753 -14.47223 -14.32724 -14.00480 -13.94757 -13.75219 -13.68729 -13.35488 -13.13372 -12.93309 -12.85080 -12.75526 -12.69652 -12.48902 -12.34734 -12.10695 -11.95104 -11.88378 -11.82355 -11.78090 -11.62346 -11.60916 -11.06490 -10.39230 -9.71248 -9.51270 -9.10435 -8.28950 -6.03024 0.39269 0.53693 1.11755 1.42931 1.51211 1.61591 1.65495 2.03491 2.35215 2.41265 2.79514 3.02583 3.09543 3.81224 3.88648 3.93055 4.10829 4.16008 4.20647 4.28762 4.30832 4.31010 4.37147 4.37847 4.43980 4.46110 4.58262 4.59044 4.61538 4.68472 4.73791 4.77257 4.84023 5.01843 5.07996 5.17315 5.26170 5.28865 5.38726 5.40109 5.53578 5.57478 5.76413 5.87409 5.99333 6.41500 6.51769 6.68855 7.13343 7.57656 8.01139 8.73705 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011324 B = 0.002781 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.986027 B =10064.411559 C =11155.099747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.538 6.538 5 C -0.113 4.113 6 C 0.127 3.873 7 N -0.450 5.450 8 C -0.357 4.357 9 H 0.108 0.892 10 C 0.004 3.996 11 N -0.893 5.893 12 Si 0.979 3.021 13 H -0.271 1.271 14 H -0.287 1.287 15 H -0.254 1.254 16 C 0.459 3.541 17 O -0.632 6.632 18 C -0.098 4.098 19 C -0.054 4.054 20 C -0.043 4.043 21 C -0.165 4.165 22 C -0.077 4.077 23 C -0.214 4.214 24 C 0.117 3.883 25 O -0.339 6.339 26 C 0.018 3.982 27 C -0.166 4.166 28 H 0.139 0.861 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.035 0.965 35 H 0.272 0.728 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.128 0.872 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.064 0.936 44 H 0.117 0.883 45 H 0.066 0.934 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.083 -8.148 -3.980 15.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.317 3.683 4 O -0.427 6.427 5 C -0.152 4.152 6 C 0.002 3.998 7 N -0.168 5.168 8 C -0.484 4.484 9 H 0.125 0.875 10 C -0.200 4.200 11 N -0.529 5.529 12 Si 0.802 3.198 13 H -0.196 1.196 14 H -0.213 1.213 15 H -0.177 1.177 16 C 0.250 3.750 17 O -0.521 6.521 18 C -0.138 4.138 19 C -0.092 4.092 20 C -0.043 4.043 21 C -0.183 4.183 22 C -0.095 4.095 23 C -0.232 4.232 24 C 0.071 3.929 25 O -0.253 6.253 26 C -0.076 4.076 27 C -0.185 4.185 28 H 0.157 0.843 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.136 0.864 33 H 0.114 0.886 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.146 0.854 41 H 0.169 0.831 42 H 0.170 0.830 43 H 0.083 0.917 44 H 0.135 0.865 45 H 0.085 0.915 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.312 -7.949 -4.346 14.493 hybrid contribution -0.348 0.461 0.829 1.010 sum 10.964 -7.488 -3.517 13.735 Atomic orbital electron populations 1.23585 0.74773 1.05903 1.02431 1.86505 1.25161 1.32306 1.83851 1.23845 0.92127 0.81290 0.71042 1.90643 1.67856 1.37511 1.46721 1.21654 0.86772 1.00660 1.06090 1.20977 0.82695 0.93217 1.02900 1.43652 1.04481 1.63152 1.05471 1.19793 1.05886 1.35633 0.87098 0.87465 1.26214 0.96351 0.93531 1.03862 1.69990 1.30932 1.18861 1.33162 0.85150 0.77722 0.79797 0.77126 1.19596 1.21315 1.17749 1.21246 0.91338 0.79160 0.83243 1.90505 1.71544 1.57103 1.32920 1.21243 0.90688 1.04272 0.97589 1.20226 0.90096 1.03189 0.95722 1.19686 0.94961 0.92899 0.96751 1.21211 0.94912 0.97839 1.04350 1.21234 0.93716 0.98425 0.96124 1.21488 1.01250 0.91622 1.08869 1.19115 0.91809 0.85312 0.96620 1.86046 1.22735 1.27711 1.88776 1.23341 0.76409 1.05514 1.02307 1.20395 0.91824 0.98458 1.07790 0.84319 0.92146 0.92147 0.87834 0.86369 0.88630 0.94631 0.91861 0.88982 0.89516 0.91404 0.91246 0.85384 0.83068 0.82985 0.91717 0.86487 0.91541 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.80 16 2 O -0.36 -11.52 10.56 -51.37 -0.54 -12.06 16 3 C 0.47 18.53 7.96 71.24 0.57 19.10 16 4 O -0.54 -24.37 15.73 21.94 0.35 -24.02 16 5 C -0.11 -4.59 6.14 29.85 0.18 -4.40 16 6 C 0.13 6.33 4.34 86.38 0.37 6.71 16 7 N -0.45 -22.39 2.54 -635.52 -1.61 -24.01 16 8 C -0.36 -17.32 8.72 84.04 0.73 -16.59 16 9 H 0.11 4.81 6.95 -2.91 -0.02 4.79 16 10 C 0.00 0.18 4.95 84.93 0.42 0.60 16 11 N -0.89 -48.00 11.34 21.66 0.25 -47.76 16 12 Si 0.98 38.37 29.61 68.60 2.03 40.41 16 13 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 14 H -0.29 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 16 C 0.46 22.03 7.63 87.66 0.67 22.70 16 17 O -0.63 -33.44 15.54 -3.06 -0.05 -33.49 16 18 C -0.10 -3.79 4.31 29.85 0.13 -3.66 16 19 C -0.05 -1.86 4.63 29.85 0.14 -1.72 16 20 C -0.04 -1.27 5.13 -19.88 -0.10 -1.37 16 21 C -0.16 -4.33 9.70 22.29 0.22 -4.12 16 22 C -0.08 -1.65 10.04 22.26 0.22 -1.43 16 23 C -0.21 -4.47 9.04 22.37 0.20 -4.27 16 24 C 0.12 2.96 6.69 22.51 0.15 3.11 16 25 O -0.34 -7.85 10.50 -92.37 -0.97 -8.82 16 26 C 0.02 0.24 9.81 113.37 1.11 1.35 16 27 C -0.17 -4.76 9.64 22.37 0.22 -4.54 16 28 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 30 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 31 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 32 H 0.12 4.45 8.14 -2.39 -0.02 4.43 16 33 H 0.10 5.25 5.32 -2.39 -0.01 5.24 16 34 H 0.04 1.94 7.32 -2.39 -0.02 1.93 16 35 H 0.27 13.88 8.32 -92.71 -0.77 13.11 16 36 H 0.09 3.31 7.68 -2.39 -0.02 3.29 16 37 H 0.09 3.37 8.09 -2.39 -0.02 3.35 16 38 H 0.07 2.43 8.02 -2.38 -0.02 2.41 16 39 H 0.07 2.42 8.06 -2.39 -0.02 2.40 16 40 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 42 H 0.15 2.20 6.30 -2.91 -0.02 2.18 16 43 H 0.06 0.72 7.65 -2.39 -0.02 0.70 16 44 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.07 0.69 7.67 -2.38 -0.02 0.68 16 46 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -69.06 390.82 6.86 -62.20 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: 0.98 Total: 34.29 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 6.43 Total: 13.27 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -1.37 Total: -71.76 kcal Atomic # 8 Polarization: -77.18 SS G_CDS: -1.21 Total: -78.40 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.41 kcal Total: -69.06 6.86 -62.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.558 kcal (2) G-P(sol) polarization free energy of solvation -69.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds