Wall clock time and date at job start Tue Mar 31 2020 19:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99913 * 2 1 4 4 C 1.50703 * 109.47208 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00007 * 270.02106 * 4 3 2 6 6 C 1.38215 * 119.99726 * 179.97438 * 5 4 3 7 7 C 1.38255 * 119.99957 * 359.81850 * 6 5 4 8 8 C 1.38217 * 120.00177 * 0.41259 * 7 6 5 9 9 C 1.50697 * 119.99945 * 179.81545 * 8 7 6 10 10 C 1.50708 * 109.46601 * 269.72566 * 9 8 7 11 11 O 1.21283 * 120.00505 * 354.45007 * 10 9 8 12 12 N 1.34779 * 119.99441 * 174.44908 * 10 9 8 13 13 C 1.37098 * 120.00483 * 4.96984 * 12 10 9 14 14 H 1.07998 * 119.99946 * 34.72520 * 13 12 10 15 15 C 1.38947 * 120.00354 * 214.73257 * 13 12 10 16 16 N 1.31419 * 119.99910 * 22.32105 * 15 13 12 17 17 Si 1.86800 * 120.00150 * 202.32403 * 15 13 12 18 18 H 1.48497 * 109.46837 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46957 * 120.00025 * 17 15 13 20 20 H 1.48505 * 109.47219 * 239.99894 * 17 15 13 21 21 C 1.46501 * 119.99665 * 184.69717 * 12 10 9 22 22 C 1.53004 * 109.46889 * 270.27416 * 21 12 10 23 23 C 1.50700 * 109.47165 * 180.02562 * 22 21 12 24 24 O 1.20824 * 119.99808 * 359.97438 * 23 22 21 25 25 O 1.34226 * 119.99963 * 180.02562 * 23 22 21 26 26 C 1.45209 * 116.99832 * 179.97438 * 25 23 22 27 27 C 1.38210 * 119.99819 * 89.99687 * 4 3 2 28 28 H 1.09003 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47822 * 300.00583 * 1 2 3 30 30 H 1.09008 * 109.46690 * 60.00722 * 1 2 3 31 31 H 1.08998 * 109.47318 * 59.99533 * 3 2 1 32 32 H 1.09000 * 109.47156 * 299.99258 * 3 2 1 33 33 H 1.08000 * 120.00196 * 359.97438 * 5 4 3 34 34 H 1.07999 * 119.99627 * 180.02562 * 6 5 4 35 35 H 1.08000 * 119.99754 * 180.22894 * 7 6 5 36 36 H 1.08995 * 109.47077 * 149.73310 * 9 8 7 37 37 H 1.08996 * 109.47540 * 29.72309 * 9 8 7 38 38 H 0.97003 * 119.99699 * 174.90453 * 16 15 13 39 39 H 1.08996 * 109.47511 * 30.27439 * 21 12 10 40 40 H 1.09002 * 109.47135 * 150.27759 * 21 12 10 41 41 H 1.09006 * 109.47323 * 299.99802 * 22 21 12 42 42 H 1.08998 * 109.47177 * 59.99785 * 22 21 12 43 43 H 1.09000 * 109.46576 * 60.00117 * 26 25 23 44 44 H 1.08996 * 109.46839 * 179.97438 * 26 25 23 45 45 H 1.08993 * 109.47060 * 299.99931 * 26 25 23 46 46 H 1.08002 * 119.99967 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2011 1.1317 1.1983 6 6 5.5789 1.0221 1.1988 7 6 6.2681 0.9635 0.0017 8 6 5.5801 1.0230 -1.1956 9 6 6.3318 0.9633 -2.5003 10 6 6.6940 2.3599 -2.9357 11 8 6.2879 3.3152 -2.3084 12 7 7.4693 2.5473 -4.0221 13 6 7.8443 1.4751 -4.7899 14 1 7.1670 0.6449 -4.9255 15 6 9.0957 1.4565 -5.3934 16 7 10.0683 2.1979 -4.9123 17 14 9.3956 0.3779 -6.8887 18 1 8.1490 -0.3536 -7.2294 19 1 9.8020 1.2264 -8.0376 20 1 10.4745 -0.5972 -6.5874 21 6 7.9065 3.8973 -4.3859 22 6 6.8755 4.5325 -5.3211 23 6 7.3254 5.9211 -5.6959 24 8 8.3639 6.3580 -5.2595 25 8 6.5720 6.6728 -6.5138 26 6 7.0671 8.0005 -6.8314 27 6 4.2018 1.1317 -1.1960 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.6624 1.1746 2.1334 34 1 6.1168 0.9789 2.1343 35 1 7.3444 0.8741 0.0022 36 1 5.7044 0.4972 -3.2600 37 1 7.2408 0.3763 -2.3695 38 1 10.9606 2.1299 -5.2867 39 1 8.0020 4.5035 -3.4851 40 1 8.8707 3.8432 -4.8914 41 1 6.7800 3.9264 -6.2220 42 1 5.9113 4.5866 -4.8157 43 1 8.0379 7.9188 -7.3201 44 1 6.3653 8.4996 -7.4995 45 1 7.1698 8.5791 -5.9135 46 1 3.6639 1.1745 -2.1316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871343206.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:02 Heat of formation + Delta-G solvation = -140.203915 kcal Electronic energy + Delta-G solvation = -28611.691330 eV Core-core repulsion = 24466.865147 eV Total energy + Delta-G solvation = -4144.826183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.05160 -39.47214 -38.41299 -37.44739 -36.17098 -34.95977 -32.65606 -31.95042 -31.41317 -30.66998 -27.82163 -27.32686 -26.77743 -25.25054 -25.08653 -23.33986 -21.79008 -20.71692 -20.06354 -19.08178 -17.42897 -16.73110 -16.47227 -16.27973 -16.15278 -16.12600 -15.96444 -15.79069 -15.30565 -14.83052 -14.56006 -14.28830 -13.90470 -13.62666 -13.58266 -13.12644 -12.73282 -12.56849 -12.41257 -12.35785 -12.19443 -12.11405 -12.01528 -11.69878 -11.47122 -11.27978 -11.21943 -10.94483 -10.79597 -10.62837 -10.54064 -10.53473 -10.42510 -10.07255 -9.99547 -9.76996 -9.23557 -8.64835 -8.49370 -8.16470 -7.62341 -6.44790 -4.13900 1.61792 1.78268 2.67588 3.04284 3.07242 3.18346 3.20966 3.71756 3.83706 4.05219 4.27589 4.78943 4.91355 4.94100 4.99118 5.19415 5.22850 5.23888 5.26184 5.30723 5.33116 5.39827 5.40325 5.50328 5.50768 5.63877 5.81579 5.83629 5.89876 5.93157 6.07736 6.22654 6.30251 6.32466 6.42828 6.54173 6.73581 6.79010 6.83849 6.88978 7.04871 7.09620 7.27967 7.36085 7.46338 7.81602 8.18543 8.29433 9.00299 9.42770 9.86094 10.56315 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009515 B = 0.003187 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.871382 B = 8784.407550 C =10288.416328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.106 3.894 4 C -0.098 4.098 5 C -0.111 4.111 6 C -0.124 4.124 7 C -0.100 4.100 8 C -0.046 4.046 9 C -0.086 4.086 10 C 0.474 3.526 11 O -0.597 6.597 12 N -0.439 5.439 13 C -0.349 4.349 14 H 0.094 0.906 15 C 0.046 3.954 16 N -0.852 5.852 17 Si 0.912 3.088 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.280 1.280 21 C 0.125 3.875 22 C -0.123 4.123 23 C 0.466 3.534 24 O -0.505 6.505 25 O -0.367 6.367 26 C 0.035 3.965 27 C -0.084 4.084 28 H 0.084 0.916 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.272 0.728 39 H 0.063 0.937 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.059 0.941 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.630 -0.223 3.074 12.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.030 3.970 4 C -0.098 4.098 5 C -0.129 4.129 6 C -0.142 4.142 7 C -0.118 4.118 8 C -0.046 4.046 9 C -0.126 4.126 10 C 0.263 3.737 11 O -0.482 6.482 12 N -0.157 5.157 13 C -0.477 4.477 14 H 0.111 0.889 15 C -0.161 4.161 16 N -0.487 5.487 17 Si 0.738 3.262 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.206 1.206 21 C 0.001 3.999 22 C -0.162 4.162 23 C 0.309 3.691 24 O -0.392 6.392 25 O -0.284 6.284 26 C -0.059 4.059 27 C -0.102 4.102 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.136 0.864 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.078 0.922 44 H 0.114 0.886 45 H 0.078 0.922 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.184 0.341 3.407 11.696 hybrid contribution 0.243 -0.073 -0.895 0.931 sum -10.940 0.268 2.512 11.228 Atomic orbital electron populations 1.22735 0.81436 1.02604 0.99861 1.87988 1.19223 1.27863 1.95373 1.21334 0.90351 0.84672 1.00630 1.19399 0.93345 1.03355 0.93708 1.20850 0.94316 1.00854 0.96893 1.21005 0.94097 1.01314 0.97810 1.21080 0.99884 0.98888 0.91980 1.19588 0.93268 0.96962 0.94788 1.20464 1.00953 0.97374 0.93805 1.20295 0.82793 0.89968 0.80628 1.90559 1.58288 1.43058 1.56290 1.43424 1.44677 1.05721 1.21924 1.19480 1.00120 1.00177 1.27916 0.88868 1.25403 0.94854 0.97191 0.98669 1.69852 1.00974 1.38815 1.39091 0.86108 0.78787 0.79665 0.81602 1.18992 1.20471 1.20593 1.21222 0.97929 0.83136 0.97594 1.21898 1.03156 0.88015 1.03163 1.24112 0.81930 0.88240 0.74833 1.90647 1.24093 1.73070 1.51422 1.86542 1.51552 1.28011 1.62296 1.23164 1.00415 0.81228 1.01099 1.20821 0.93746 0.98544 0.97114 0.89739 0.94250 0.94092 0.92723 0.92475 0.86695 0.86340 0.86112 0.89316 0.88305 0.91714 0.91823 0.86391 0.87806 0.88466 0.92176 0.88644 0.92191 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -5.07 10.69 -35.23 -0.38 -5.44 16 3 C 0.11 1.35 6.06 36.01 0.22 1.57 16 4 C -0.10 -1.51 5.51 -104.62 -0.58 -2.08 16 5 C -0.11 -1.61 9.70 -39.58 -0.38 -2.00 16 6 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 7 C -0.10 -1.71 9.70 -39.58 -0.38 -2.10 16 8 C -0.05 -0.83 4.38 -104.62 -0.46 -1.29 16 9 C -0.09 -1.67 4.51 -29.03 -0.13 -1.80 16 10 C 0.47 11.03 7.61 -10.98 -0.08 10.95 16 11 O -0.60 -15.25 15.68 5.55 0.09 -15.16 16 12 N -0.44 -10.53 2.54 -114.81 -0.29 -10.82 16 13 C -0.35 -8.29 8.58 -14.93 -0.13 -8.42 16 14 H 0.09 2.08 7.17 -52.49 -0.38 1.71 16 15 C 0.05 1.11 4.96 -17.47 -0.09 1.02 16 16 N -0.85 -21.93 11.34 55.50 0.63 -21.30 16 17 Si 0.91 18.57 29.61 -169.99 -5.03 13.54 16 18 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 19 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 21 C 0.13 2.99 4.26 -4.04 -0.02 2.97 16 22 C -0.12 -2.47 6.13 -27.88 -0.17 -2.64 16 23 C 0.47 9.08 7.96 36.01 0.29 9.37 16 24 O -0.51 -11.14 15.73 -18.75 -0.29 -11.44 16 25 O -0.37 -6.08 10.57 -39.25 -0.41 -6.49 16 26 C 0.04 0.44 10.56 101.05 1.07 1.51 16 27 C -0.08 -1.43 9.36 -39.59 -0.37 -1.80 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.04 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 32 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 36 H 0.09 1.57 7.73 -51.93 -0.40 1.17 16 37 H 0.10 1.89 7.96 -51.93 -0.41 1.48 16 38 H 0.27 6.65 8.32 -40.82 -0.34 6.31 16 39 H 0.06 1.63 7.46 -51.93 -0.39 1.24 16 40 H 0.12 3.06 5.33 -51.93 -0.28 2.79 16 41 H 0.10 1.97 8.14 -51.93 -0.42 1.54 16 42 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 43 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 44 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 46 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 395.29 15.07 5.96 5.96 Total: -1.00 -30.96 395.29 -7.15 -38.10 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -6.90 Total: 8.69 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -0.50 Total: 4.37 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.34 Total: -32.12 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -1.00 Total: -38.54 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.96 -7.15 -38.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343206.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.100 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds