Wall clock time and date at job start Tue Mar 31 2020 19:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99913 * 2 1 4 4 C 1.50703 * 109.47208 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00007 * 270.02106 * 4 3 2 6 6 C 1.38215 * 119.99726 * 179.97438 * 5 4 3 7 7 C 1.38255 * 119.99957 * 359.81850 * 6 5 4 8 8 C 1.38217 * 120.00177 * 0.41259 * 7 6 5 9 9 C 1.50697 * 119.99945 * 179.81545 * 8 7 6 10 10 C 1.50708 * 109.46601 * 269.72566 * 9 8 7 11 11 O 1.21283 * 120.00505 * 354.45007 * 10 9 8 12 12 N 1.34779 * 119.99441 * 174.44908 * 10 9 8 13 13 C 1.37098 * 120.00483 * 4.96984 * 12 10 9 14 14 H 1.07998 * 119.99946 * 34.72520 * 13 12 10 15 15 C 1.38947 * 120.00354 * 214.73257 * 13 12 10 16 16 N 1.31419 * 119.99910 * 22.32105 * 15 13 12 17 17 Si 1.86800 * 120.00150 * 202.32403 * 15 13 12 18 18 H 1.48497 * 109.46837 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46957 * 120.00025 * 17 15 13 20 20 H 1.48505 * 109.47219 * 239.99894 * 17 15 13 21 21 C 1.46501 * 119.99665 * 184.69717 * 12 10 9 22 22 C 1.53004 * 109.46889 * 270.27416 * 21 12 10 23 23 C 1.50700 * 109.47165 * 180.02562 * 22 21 12 24 24 O 1.20824 * 119.99808 * 359.97438 * 23 22 21 25 25 O 1.34226 * 119.99963 * 180.02562 * 23 22 21 26 26 C 1.45209 * 116.99832 * 179.97438 * 25 23 22 27 27 C 1.38210 * 119.99819 * 89.99687 * 4 3 2 28 28 H 1.09003 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47822 * 300.00583 * 1 2 3 30 30 H 1.09008 * 109.46690 * 60.00722 * 1 2 3 31 31 H 1.08998 * 109.47318 * 59.99533 * 3 2 1 32 32 H 1.09000 * 109.47156 * 299.99258 * 3 2 1 33 33 H 1.08000 * 120.00196 * 359.97438 * 5 4 3 34 34 H 1.07999 * 119.99627 * 180.02562 * 6 5 4 35 35 H 1.08000 * 119.99754 * 180.22894 * 7 6 5 36 36 H 1.08995 * 109.47077 * 149.73310 * 9 8 7 37 37 H 1.08996 * 109.47540 * 29.72309 * 9 8 7 38 38 H 0.97003 * 119.99699 * 174.90453 * 16 15 13 39 39 H 1.08996 * 109.47511 * 30.27439 * 21 12 10 40 40 H 1.09002 * 109.47135 * 150.27759 * 21 12 10 41 41 H 1.09006 * 109.47323 * 299.99802 * 22 21 12 42 42 H 1.08998 * 109.47177 * 59.99785 * 22 21 12 43 43 H 1.09000 * 109.46576 * 60.00117 * 26 25 23 44 44 H 1.08996 * 109.46839 * 179.97438 * 26 25 23 45 45 H 1.08993 * 109.47060 * 299.99931 * 26 25 23 46 46 H 1.08002 * 119.99967 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2011 1.1317 1.1983 6 6 5.5789 1.0221 1.1988 7 6 6.2681 0.9635 0.0017 8 6 5.5801 1.0230 -1.1956 9 6 6.3318 0.9633 -2.5003 10 6 6.6940 2.3599 -2.9357 11 8 6.2879 3.3152 -2.3084 12 7 7.4693 2.5473 -4.0221 13 6 7.8443 1.4751 -4.7899 14 1 7.1670 0.6449 -4.9255 15 6 9.0957 1.4565 -5.3934 16 7 10.0683 2.1979 -4.9123 17 14 9.3956 0.3779 -6.8887 18 1 8.1490 -0.3536 -7.2294 19 1 9.8020 1.2264 -8.0376 20 1 10.4745 -0.5972 -6.5874 21 6 7.9065 3.8973 -4.3859 22 6 6.8755 4.5325 -5.3211 23 6 7.3254 5.9211 -5.6959 24 8 8.3639 6.3580 -5.2595 25 8 6.5720 6.6728 -6.5138 26 6 7.0671 8.0005 -6.8314 27 6 4.2018 1.1317 -1.1960 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.6624 1.1746 2.1334 34 1 6.1168 0.9789 2.1343 35 1 7.3444 0.8741 0.0022 36 1 5.7044 0.4972 -3.2600 37 1 7.2408 0.3763 -2.3695 38 1 10.9606 2.1299 -5.2867 39 1 8.0020 4.5035 -3.4851 40 1 8.8707 3.8432 -4.8914 41 1 6.7800 3.9264 -6.2220 42 1 5.9113 4.5866 -4.8157 43 1 8.0379 7.9188 -7.3201 44 1 6.3653 8.4996 -7.4995 45 1 7.1698 8.5791 -5.9135 46 1 3.6639 1.1745 -2.1316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871343206.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:01 Heat of formation + Delta-G solvation = -157.080537 kcal Electronic energy + Delta-G solvation = -28612.423156 eV Core-core repulsion = 24466.865147 eV Total energy + Delta-G solvation = -4145.558008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58867 -40.87922 -39.93520 -38.46180 -37.66227 -36.79505 -34.08637 -33.73124 -32.67957 -32.28563 -29.11871 -28.37462 -27.96575 -26.91375 -26.17917 -24.98403 -23.02816 -22.08919 -21.56000 -20.86480 -19.04549 -18.35286 -17.88944 -17.63984 -17.52869 -17.41720 -17.22968 -16.97877 -16.48652 -16.24561 -16.00156 -15.92728 -15.29488 -15.10019 -14.90739 -14.60951 -14.27946 -13.89502 -13.79781 -13.64656 -13.53072 -13.33513 -13.16730 -13.11088 -12.93092 -12.81781 -12.62115 -12.52619 -12.29314 -12.05148 -11.97761 -11.85614 -11.79331 -11.75380 -11.62698 -11.07642 -10.62419 -10.44644 -9.71406 -9.54255 -9.49992 -8.29587 -6.04650 0.39564 0.53668 1.10977 1.42456 1.51600 1.63220 1.65944 2.03446 2.34046 2.64590 3.02964 3.08133 3.30540 3.82011 3.86011 3.92007 4.06217 4.10343 4.23107 4.24179 4.29412 4.29952 4.33282 4.41414 4.51954 4.53815 4.58824 4.59286 4.60252 4.67546 4.68379 4.80720 4.85986 4.88853 4.97462 5.15730 5.22813 5.25264 5.39076 5.54910 5.57767 5.65372 5.77786 5.96089 6.13890 6.24135 6.41626 6.67918 7.13479 7.57549 8.00894 8.72778 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009515 B = 0.003187 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.871382 B = 8784.407550 C =10288.416328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.108 3.892 4 C -0.104 4.104 5 C -0.110 4.110 6 C -0.124 4.124 7 C -0.122 4.122 8 C -0.069 4.069 9 C -0.075 4.075 10 C 0.465 3.535 11 O -0.625 6.625 12 N -0.449 5.449 13 C -0.357 4.357 14 H 0.108 0.892 15 C 0.005 3.995 16 N -0.891 5.891 17 Si 0.980 3.020 18 H -0.250 1.250 19 H -0.283 1.283 20 H -0.281 1.281 21 C 0.131 3.869 22 C -0.113 4.113 23 C 0.473 3.527 24 O -0.538 6.538 25 O -0.362 6.362 26 C 0.026 3.974 27 C -0.100 4.100 28 H 0.096 0.904 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.272 0.728 39 H 0.032 0.968 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.102 0.898 43 H 0.060 0.940 44 H 0.139 0.861 45 H 0.060 0.940 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.769 -0.811 2.821 14.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.032 3.968 4 C -0.104 4.104 5 C -0.128 4.128 6 C -0.141 4.141 7 C -0.141 4.141 8 C -0.070 4.070 9 C -0.114 4.114 10 C 0.255 3.745 11 O -0.513 6.513 12 N -0.167 5.167 13 C -0.484 4.484 14 H 0.126 0.874 15 C -0.199 4.199 16 N -0.528 5.528 17 Si 0.804 3.196 18 H -0.173 1.173 19 H -0.209 1.209 20 H -0.207 1.207 21 C 0.006 3.994 22 C -0.152 4.152 23 C 0.317 3.683 24 O -0.427 6.427 25 O -0.279 6.279 26 C -0.067 4.067 27 C -0.119 4.119 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.135 0.865 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.115 0.885 41 H 0.136 0.864 42 H 0.120 0.880 43 H 0.079 0.921 44 H 0.157 0.843 45 H 0.078 0.922 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.358 -0.252 3.140 13.724 hybrid contribution 0.847 0.192 -0.757 1.152 sum -12.510 -0.060 2.383 12.736 Atomic orbital electron populations 1.22955 0.79359 1.03868 1.01026 1.87937 1.21511 1.27969 1.95608 1.21335 0.88587 0.84964 1.01890 1.19787 0.95132 1.02144 0.93368 1.21264 0.94282 0.99334 0.97934 1.21349 0.94671 1.00036 0.98078 1.21241 1.00036 1.00035 0.92750 1.19596 0.93956 0.98971 0.94443 1.20357 1.01257 0.94643 0.95152 1.20971 0.82183 0.91332 0.79986 1.90521 1.59327 1.44400 1.57004 1.43648 1.44696 1.05874 1.22459 1.19855 1.00481 1.00388 1.27644 0.87413 1.26234 0.94410 0.98434 1.00795 1.69981 1.01436 1.40719 1.40644 0.85070 0.79019 0.77823 0.77712 1.17297 1.20874 1.20694 1.20968 0.98378 0.83339 0.96677 1.21659 1.01878 0.88819 1.02842 1.23864 0.81476 0.88202 0.74773 1.90637 1.25526 1.73734 1.52841 1.86509 1.50791 1.29604 1.60965 1.23586 1.01877 0.79182 1.02045 1.20961 0.93424 0.99289 0.98184 0.88522 0.92656 0.93326 0.90561 0.92121 0.83594 0.83535 0.86465 0.87834 0.88636 0.91807 0.94918 0.88527 0.86422 0.87993 0.92122 0.84328 0.92161 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.62 16 2 O -0.41 -9.96 10.69 -148.98 -1.59 -11.55 16 3 C 0.11 2.53 6.06 71.24 0.43 2.96 16 4 C -0.10 -3.07 5.51 -19.87 -0.11 -3.18 16 5 C -0.11 -2.98 9.70 22.27 0.22 -2.76 16 6 C -0.12 -3.54 10.05 22.27 0.22 -3.31 16 7 C -0.12 -4.22 9.70 22.27 0.22 -4.01 16 8 C -0.07 -2.56 4.38 -19.87 -0.09 -2.65 16 9 C -0.07 -2.95 4.51 29.10 0.13 -2.81 16 10 C 0.46 22.28 7.61 87.66 0.67 22.94 16 11 O -0.63 -33.09 15.68 -3.04 -0.05 -33.14 16 12 N -0.45 -22.11 2.54 -635.53 -1.61 -23.72 16 13 C -0.36 -17.02 8.58 84.04 0.72 -16.30 16 14 H 0.11 4.74 7.17 -2.91 -0.02 4.72 16 15 C 0.00 0.24 4.96 84.92 0.42 0.66 16 16 N -0.89 -47.17 11.34 21.66 0.25 -46.93 16 17 Si 0.98 37.85 29.61 68.60 2.03 39.88 16 18 H -0.25 -8.93 7.11 99.48 0.71 -8.23 16 19 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 20 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 21 C 0.13 6.50 4.26 86.38 0.37 6.87 16 22 C -0.11 -4.61 6.13 29.85 0.18 -4.43 16 23 C 0.47 18.58 7.96 71.24 0.57 19.14 16 24 O -0.54 -24.35 15.73 21.97 0.35 -24.00 16 25 O -0.36 -11.58 10.57 -51.38 -0.54 -12.12 16 26 C 0.03 0.61 10.56 113.37 1.20 1.81 16 27 C -0.10 -3.41 9.36 22.27 0.21 -3.20 16 28 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 32 H 0.06 1.35 8.09 -2.39 -0.02 1.33 16 33 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 34 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 35 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 36 H 0.10 3.68 7.73 -2.39 -0.02 3.66 16 37 H 0.10 3.76 7.96 -2.39 -0.02 3.74 16 38 H 0.27 13.67 8.32 -92.71 -0.77 12.90 16 39 H 0.03 1.77 7.46 -2.39 -0.02 1.76 16 40 H 0.10 5.26 5.33 -2.39 -0.01 5.24 16 41 H 0.12 4.44 8.14 -2.38 -0.02 4.42 16 42 H 0.10 4.05 8.14 -2.39 -0.02 4.03 16 43 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 44 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 46 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -68.81 395.29 6.40 -62.41 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: 0.97 Total: 35.83 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 6.60 Total: 13.34 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -1.37 Total: -70.65 kcal Atomic # 8 Polarization: -78.98 SS G_CDS: -1.84 Total: -80.81 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Total: -68.81 6.40 -62.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343206.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.671 kcal (2) G-P(sol) polarization free energy of solvation -68.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds