Wall clock time and date at job start Tue Mar 31 2020 19:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34238 * 116.99299 * 2 1 4 4 O 1.20820 * 120.00368 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99468 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.46836 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47320 * 186.27837 * 6 5 3 8 8 C 1.37103 * 120.00085 * 281.99966 * 7 6 5 9 9 H 1.08003 * 119.99331 * 45.17402 * 8 7 6 10 10 C 1.38943 * 120.00035 * 225.18250 * 8 7 6 11 11 N 1.31405 * 120.00244 * 31.99714 * 10 8 7 12 12 Si 1.86804 * 119.99911 * 211.99364 * 10 8 7 13 13 H 1.48501 * 109.47028 * 94.99952 * 12 10 8 14 14 H 1.48500 * 109.47396 * 214.99848 * 12 10 8 15 15 H 1.48499 * 109.46870 * 335.00036 * 12 10 8 16 16 C 1.34772 * 120.00198 * 101.99692 * 7 6 5 17 17 O 1.21304 * 120.00132 * 178.53407 * 16 7 6 18 18 C 1.50697 * 120.00379 * 358.53234 * 16 7 6 19 19 H 1.08998 * 109.46954 * 45.41988 * 18 16 7 20 20 C 1.52999 * 109.47195 * 285.42533 * 18 16 7 21 21 C 1.50695 * 109.47564 * 180.47450 * 20 18 16 22 22 C 1.38236 * 120.00251 * 85.39109 * 21 20 18 23 23 C 1.38230 * 120.00378 * 179.72854 * 22 21 20 24 24 C 1.38240 * 119.99863 * 0.25801 * 23 22 21 25 25 C 1.38238 * 120.00077 * 359.97438 * 24 23 22 26 26 C 1.38237 * 119.99904 * 359.97438 * 25 24 23 27 27 O 1.42897 * 109.47513 * 165.42412 * 18 16 7 28 28 C 1.42900 * 113.99875 * 269.99734 * 27 18 16 29 29 H 1.09008 * 109.46356 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46970 * 299.99629 * 1 2 3 31 31 H 1.08990 * 109.47249 * 60.00277 * 1 2 3 32 32 H 1.09006 * 109.46626 * 60.00085 * 5 3 2 33 33 H 1.08990 * 109.47350 * 299.99736 * 5 3 2 34 34 H 1.09004 * 109.47530 * 66.27411 * 6 5 3 35 35 H 1.09010 * 109.47501 * 306.27580 * 6 5 3 36 36 H 0.97006 * 120.00215 * 184.97433 * 11 10 8 37 37 H 1.09003 * 109.47196 * 60.47128 * 20 18 16 38 38 H 1.09002 * 109.47219 * 300.47328 * 20 18 16 39 39 H 1.08005 * 119.99753 * 0.02562 * 22 21 20 40 40 H 1.08001 * 120.00194 * 180.27803 * 23 22 21 41 41 H 1.08003 * 120.00015 * 180.02562 * 24 23 22 42 42 H 1.07993 * 119.99989 * 180.02562 * 25 24 23 43 43 H 1.07994 * 119.99809 * 180.02562 * 26 25 24 44 44 H 1.08998 * 109.47641 * 300.00464 * 28 27 18 45 45 H 1.08999 * 109.46881 * 60.00108 * 28 27 18 46 46 H 1.08996 * 109.47188 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2751 -0.0006 6 6 4.0000 2.7423 -0.0011 7 7 5.4549 2.8214 -0.1527 8 6 6.2705 2.5763 0.9218 9 1 6.0801 1.7272 1.5615 10 6 7.3416 3.4204 1.1878 11 7 7.2594 4.6987 0.8944 12 14 8.8984 2.7381 1.9625 13 1 9.8793 2.4107 0.8967 14 1 9.4816 3.7522 2.8773 15 1 8.5720 1.5091 2.7294 16 6 5.9918 3.1351 -1.3484 17 8 7.1955 3.2267 -1.4676 18 6 5.0968 3.3719 -2.5375 19 1 4.2646 4.0117 -2.2441 20 6 4.5568 2.0331 -3.0441 21 6 3.6711 2.2688 -4.2404 22 6 4.2257 2.3632 -5.5031 23 6 3.4127 2.5739 -6.6010 24 6 2.0456 2.6954 -6.4357 25 6 1.4915 2.6058 -5.1724 26 6 2.3044 2.3941 -4.0745 27 8 5.8435 4.0082 -3.5765 28 6 5.8189 5.4359 -3.5192 29 1 -0.3632 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 3.9556 0.7811 -0.8909 33 1 3.9564 0.7809 0.8891 34 1 3.7068 3.2082 0.9397 35 1 3.5195 3.2629 -0.8296 36 1 8.0314 5.2741 1.0127 37 1 3.9802 1.5516 -2.2543 38 1 5.3894 1.3901 -3.3296 39 1 5.2937 2.2677 -5.6324 40 1 3.8455 2.6432 -7.5881 41 1 1.4104 2.8596 -7.2936 42 1 0.4235 2.7003 -5.0433 43 1 1.8715 2.3236 -3.0877 44 1 4.7898 5.7852 -3.6025 45 1 6.2399 5.7687 -2.5705 46 1 6.4087 5.8426 -4.3407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871345039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:01 Heat of formation + Delta-G solvation = -125.140590 kcal Electronic energy + Delta-G solvation = -30521.629549 eV Core-core repulsion = 26377.456561 eV Total energy + Delta-G solvation = -4144.172988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.40426 -39.55300 -38.56932 -36.78920 -36.37901 -34.62874 -33.20933 -32.19798 -30.74646 -30.41408 -29.03032 -27.62780 -25.95989 -25.42230 -23.91712 -22.93074 -22.41047 -20.91315 -20.55609 -19.34383 -17.59740 -17.17223 -16.70209 -16.49407 -16.36200 -16.08271 -15.55382 -15.21481 -14.87487 -14.73639 -14.53976 -14.22268 -13.79318 -13.57848 -13.38282 -13.26554 -13.19293 -12.92785 -12.69678 -12.60205 -12.14717 -12.02837 -11.73421 -11.61854 -11.45226 -11.24969 -11.01191 -10.84936 -10.81930 -10.79793 -10.77308 -10.50321 -10.34190 -10.28789 -10.16270 -9.64192 -8.78721 -8.66953 -8.56736 -7.95310 -7.32009 -6.25395 -3.94462 1.47595 1.54881 2.34219 2.79890 3.33278 3.41742 3.47043 3.84350 4.02826 4.15997 4.36256 4.75652 4.90052 4.98595 5.05326 5.06230 5.12032 5.13145 5.22792 5.25297 5.28653 5.37358 5.46368 5.47750 5.60818 5.64389 5.66791 5.76902 5.78834 5.90737 5.98879 5.99622 6.12185 6.20291 6.22649 6.23672 6.33091 6.44043 6.58994 6.62855 6.66230 6.83306 7.14586 7.54050 7.61588 7.86103 8.18428 8.93639 9.06666 9.53652 10.13044 10.81970 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009162 B = 0.005210 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.277001 B = 5373.123527 C = 7794.076760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.464 3.536 4 O -0.508 6.508 5 C -0.137 4.137 6 C 0.114 3.886 7 N -0.447 5.447 8 C -0.367 4.367 9 H 0.081 0.919 10 C 0.093 3.907 11 N -0.827 5.827 12 Si 0.898 3.102 13 H -0.275 1.275 14 H -0.290 1.290 15 H -0.272 1.272 16 C 0.460 3.540 17 O -0.526 6.526 18 C 0.083 3.917 19 H 0.069 0.931 20 C -0.082 4.082 21 C -0.070 4.070 22 C -0.095 4.095 23 C -0.124 4.124 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.118 4.118 27 O -0.359 6.359 28 C 0.036 3.964 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.265 0.735 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.032 0.968 45 H 0.049 0.951 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.092 -5.849 -8.805 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.307 3.693 4 O -0.395 6.395 5 C -0.175 4.175 6 C -0.011 4.011 7 N -0.171 5.171 8 C -0.492 4.492 9 H 0.099 0.901 10 C -0.120 4.120 11 N -0.459 5.459 12 Si 0.724 3.276 13 H -0.201 1.201 14 H -0.216 1.216 15 H -0.196 1.196 16 C 0.247 3.753 17 O -0.403 6.403 18 C 0.021 3.979 19 H 0.087 0.913 20 C -0.120 4.120 21 C -0.070 4.070 22 C -0.113 4.113 23 C -0.142 4.142 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.136 4.136 27 O -0.277 6.277 28 C -0.061 4.061 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.144 0.856 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.513 -5.380 -8.951 16.298 hybrid contribution 0.280 0.144 0.594 0.672 sum -12.233 -5.237 -8.357 15.713 Atomic orbital electron populations 1.23213 0.76970 1.03332 1.02415 1.86552 1.23007 1.34026 1.84320 1.24070 0.92359 0.81081 0.71825 1.90654 1.67314 1.36228 1.45331 1.22180 0.85983 1.02901 1.06460 1.21387 0.85251 0.91502 1.02989 1.43340 1.02181 1.63838 1.07730 1.18871 1.11403 1.10515 1.08438 0.90090 1.25115 0.99497 0.93122 0.94217 1.70041 1.29505 1.03321 1.43065 0.86446 0.83775 0.78890 0.78449 1.20084 1.21611 1.19640 1.20560 0.89153 0.82332 0.83267 1.90543 1.14941 1.51353 1.83428 1.22028 0.93206 0.94299 0.88323 0.91328 1.20905 0.98765 0.96463 0.95833 1.19825 0.93530 0.98799 0.94856 1.21111 1.00088 0.98254 0.91800 1.21125 0.93749 1.00720 0.98640 1.21073 0.95216 1.01408 0.97048 1.21049 0.99457 1.00861 0.92785 1.21082 0.93235 1.00531 0.98785 1.87849 1.73084 1.18588 1.48145 1.22713 0.99716 0.81384 1.02311 0.88440 0.92033 0.92034 0.87476 0.86792 0.90449 0.91562 0.92475 0.89182 0.89487 0.85650 0.86419 0.86626 0.86501 0.86453 0.94930 0.93202 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.67 10.57 -39.28 -0.42 -5.09 16 3 C 0.46 6.84 7.96 36.01 0.29 7.12 16 4 O -0.51 -8.50 15.64 -18.74 -0.29 -8.79 16 5 C -0.14 -2.11 5.42 -27.88 -0.15 -2.26 16 6 C 0.11 2.17 4.27 -4.05 -0.02 2.15 16 7 N -0.45 -10.57 2.53 -114.81 -0.29 -10.86 16 8 C -0.37 -9.63 8.98 -14.93 -0.13 -9.77 16 9 H 0.08 2.02 8.00 -52.48 -0.42 1.60 16 10 C 0.09 2.55 3.91 -17.47 -0.07 2.48 16 11 N -0.83 -23.92 12.86 55.50 0.71 -23.21 16 12 Si 0.90 21.68 29.66 -169.99 -5.04 16.64 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 16 C 0.46 11.25 6.43 -10.99 -0.07 11.18 16 17 O -0.53 -15.21 14.85 -13.94 -0.21 -15.42 16 18 C 0.08 1.64 1.73 -27.88 -0.05 1.59 16 19 H 0.07 1.31 6.23 -51.93 -0.32 0.99 16 20 C -0.08 -1.35 4.90 -27.89 -0.14 -1.49 16 21 C -0.07 -1.04 4.97 -104.62 -0.52 -1.56 16 22 C -0.09 -1.33 9.03 -39.59 -0.36 -1.69 16 23 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 24 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 25 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 26 C -0.12 -1.62 9.68 -39.58 -0.38 -2.00 16 27 O -0.36 -7.19 8.97 -54.71 -0.49 -7.68 16 28 C 0.04 0.63 10.81 101.05 1.09 1.72 16 29 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 32 H 0.11 1.56 5.71 -51.93 -0.30 1.26 16 33 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.08 1.56 8.13 -51.93 -0.42 1.14 16 35 H 0.07 1.21 5.27 -51.92 -0.27 0.93 16 36 H 0.27 7.39 8.32 -40.82 -0.34 7.05 16 37 H 0.09 1.37 3.79 -51.93 -0.20 1.17 16 38 H 0.09 1.46 8.12 -51.93 -0.42 1.04 16 39 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 43 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -33.76 385.97 -7.40 -41.17 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.56 Total: 4.23 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -0.63 Total: 3.20 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.42 Total: -34.07 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -1.41 Total: -36.98 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.04 Total: 16.64 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.76 -7.40 -41.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871345039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.974 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds