Wall clock time and date at job start Tue Mar 31 2020 19:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34238 * 116.99299 * 2 1 4 4 O 1.20820 * 120.00368 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99468 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.46836 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47320 * 186.27837 * 6 5 3 8 8 C 1.37103 * 120.00085 * 281.99966 * 7 6 5 9 9 H 1.08003 * 119.99331 * 45.17402 * 8 7 6 10 10 C 1.38943 * 120.00035 * 225.18250 * 8 7 6 11 11 N 1.31405 * 120.00244 * 31.99714 * 10 8 7 12 12 Si 1.86804 * 119.99911 * 211.99364 * 10 8 7 13 13 H 1.48501 * 109.47028 * 94.99952 * 12 10 8 14 14 H 1.48500 * 109.47396 * 214.99848 * 12 10 8 15 15 H 1.48499 * 109.46870 * 335.00036 * 12 10 8 16 16 C 1.34772 * 120.00198 * 101.99692 * 7 6 5 17 17 O 1.21304 * 120.00132 * 178.53407 * 16 7 6 18 18 C 1.50697 * 120.00379 * 358.53234 * 16 7 6 19 19 H 1.08998 * 109.46954 * 45.41988 * 18 16 7 20 20 C 1.52999 * 109.47195 * 285.42533 * 18 16 7 21 21 C 1.50695 * 109.47564 * 180.47450 * 20 18 16 22 22 C 1.38236 * 120.00251 * 85.39109 * 21 20 18 23 23 C 1.38230 * 120.00378 * 179.72854 * 22 21 20 24 24 C 1.38240 * 119.99863 * 0.25801 * 23 22 21 25 25 C 1.38238 * 120.00077 * 359.97438 * 24 23 22 26 26 C 1.38237 * 119.99904 * 359.97438 * 25 24 23 27 27 O 1.42897 * 109.47513 * 165.42412 * 18 16 7 28 28 C 1.42900 * 113.99875 * 269.99734 * 27 18 16 29 29 H 1.09008 * 109.46356 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46970 * 299.99629 * 1 2 3 31 31 H 1.08990 * 109.47249 * 60.00277 * 1 2 3 32 32 H 1.09006 * 109.46626 * 60.00085 * 5 3 2 33 33 H 1.08990 * 109.47350 * 299.99736 * 5 3 2 34 34 H 1.09004 * 109.47530 * 66.27411 * 6 5 3 35 35 H 1.09010 * 109.47501 * 306.27580 * 6 5 3 36 36 H 0.97006 * 120.00215 * 184.97433 * 11 10 8 37 37 H 1.09003 * 109.47196 * 60.47128 * 20 18 16 38 38 H 1.09002 * 109.47219 * 300.47328 * 20 18 16 39 39 H 1.08005 * 119.99753 * 0.02562 * 22 21 20 40 40 H 1.08001 * 120.00194 * 180.27803 * 23 22 21 41 41 H 1.08003 * 120.00015 * 180.02562 * 24 23 22 42 42 H 1.07993 * 119.99989 * 180.02562 * 25 24 23 43 43 H 1.07994 * 119.99809 * 180.02562 * 26 25 24 44 44 H 1.08998 * 109.47641 * 300.00464 * 28 27 18 45 45 H 1.08999 * 109.46881 * 60.00108 * 28 27 18 46 46 H 1.08996 * 109.47188 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2751 -0.0006 6 6 4.0000 2.7423 -0.0011 7 7 5.4549 2.8214 -0.1527 8 6 6.2705 2.5763 0.9218 9 1 6.0801 1.7272 1.5615 10 6 7.3416 3.4204 1.1878 11 7 7.2594 4.6987 0.8944 12 14 8.8984 2.7381 1.9625 13 1 9.8793 2.4107 0.8967 14 1 9.4816 3.7522 2.8773 15 1 8.5720 1.5091 2.7294 16 6 5.9918 3.1351 -1.3484 17 8 7.1955 3.2267 -1.4676 18 6 5.0968 3.3719 -2.5375 19 1 4.2646 4.0117 -2.2441 20 6 4.5568 2.0331 -3.0441 21 6 3.6711 2.2688 -4.2404 22 6 4.2257 2.3632 -5.5031 23 6 3.4127 2.5739 -6.6010 24 6 2.0456 2.6954 -6.4357 25 6 1.4915 2.6058 -5.1724 26 6 2.3044 2.3941 -4.0745 27 8 5.8435 4.0082 -3.5765 28 6 5.8189 5.4359 -3.5192 29 1 -0.3632 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 3.9556 0.7811 -0.8909 33 1 3.9564 0.7809 0.8891 34 1 3.7068 3.2082 0.9397 35 1 3.5195 3.2629 -0.8296 36 1 8.0314 5.2741 1.0127 37 1 3.9802 1.5516 -2.2543 38 1 5.3894 1.3901 -3.3296 39 1 5.2937 2.2677 -5.6324 40 1 3.8455 2.6432 -7.5881 41 1 1.4104 2.8596 -7.2936 42 1 0.4235 2.7003 -5.0433 43 1 1.8715 2.3236 -3.0877 44 1 4.7898 5.7852 -3.6025 45 1 6.2399 5.7687 -2.5705 46 1 6.4087 5.8426 -4.3407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871345039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:59 Heat of formation + Delta-G solvation = -144.179030 kcal Electronic energy + Delta-G solvation = -30522.455118 eV Core-core repulsion = 26377.456561 eV Total energy + Delta-G solvation = -4144.998557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.63508 -40.96148 -39.86279 -38.33843 -37.59859 -36.43408 -34.72282 -33.85970 -31.98514 -31.70346 -30.37463 -28.59301 -27.51637 -27.05089 -25.35871 -24.52679 -23.38257 -22.02780 -21.80524 -21.12636 -18.92004 -18.84284 -17.90104 -17.76831 -17.54017 -17.43968 -17.08225 -16.84257 -16.38538 -15.94086 -15.83374 -15.73420 -15.30105 -15.08978 -14.99334 -14.43877 -14.20941 -14.16448 -13.90534 -13.77944 -13.62930 -13.43683 -13.21629 -13.07804 -12.92427 -12.75300 -12.72051 -12.55510 -12.22903 -12.09811 -11.96854 -11.83096 -11.76592 -11.67246 -11.53454 -11.30532 -10.67972 -9.95650 -9.74266 -9.54716 -9.28478 -8.32555 -6.02935 0.48001 0.57614 1.16868 1.37257 1.48545 1.51187 1.71029 2.11532 2.38111 2.63737 2.95647 3.07543 3.20324 3.72044 3.79831 3.81891 3.99611 4.03381 4.07979 4.18392 4.22566 4.29663 4.33440 4.36424 4.38630 4.40061 4.43148 4.55023 4.59827 4.67884 4.74494 4.76786 4.80107 4.82058 4.87186 5.08144 5.21830 5.23984 5.38416 5.50483 5.63533 5.68142 5.79079 6.01801 6.18210 6.19354 6.73060 6.95400 7.11948 7.55353 8.19508 8.74425 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009162 B = 0.005210 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.277001 B = 5373.123527 C = 7794.076760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.475 3.525 4 O -0.530 6.530 5 C -0.128 4.128 6 C 0.117 3.883 7 N -0.456 5.456 8 C -0.375 4.375 9 H 0.093 0.907 10 C 0.044 3.956 11 N -0.866 5.866 12 Si 0.952 3.048 13 H -0.296 1.296 14 H -0.285 1.285 15 H -0.248 1.248 16 C 0.450 3.550 17 O -0.581 6.581 18 C 0.095 3.905 19 H 0.074 0.926 20 C -0.072 4.072 21 C -0.087 4.087 22 C -0.110 4.110 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.127 4.127 27 O -0.371 6.371 28 C 0.035 3.965 29 H 0.131 0.869 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.260 0.740 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.117 0.883 44 H 0.055 0.945 45 H 0.014 0.986 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.657 -7.253 -10.090 19.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.319 3.681 4 O -0.419 6.419 5 C -0.166 4.166 6 C -0.006 4.006 7 N -0.178 5.178 8 C -0.501 4.501 9 H 0.110 0.890 10 C -0.164 4.164 11 N -0.500 5.500 12 Si 0.777 3.223 13 H -0.223 1.223 14 H -0.211 1.211 15 H -0.171 1.171 16 C 0.238 3.762 17 O -0.462 6.462 18 C 0.034 3.966 19 H 0.091 0.909 20 C -0.109 4.109 21 C -0.087 4.087 22 C -0.128 4.128 23 C -0.143 4.143 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.145 4.145 27 O -0.288 6.288 28 C -0.061 4.061 29 H 0.149 0.851 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.133 0.867 40 H 0.158 0.842 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.135 0.865 44 H 0.074 0.926 45 H 0.032 0.968 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.131 -6.824 -10.206 19.485 hybrid contribution 0.938 0.546 0.929 1.429 sum -14.193 -6.278 -9.276 18.080 Atomic orbital electron populations 1.23576 0.74694 1.05696 1.02687 1.86522 1.25119 1.32499 1.83703 1.23644 0.91749 0.81386 0.71351 1.90654 1.67655 1.37073 1.46542 1.21915 0.87261 1.00079 1.07383 1.21377 0.82473 0.94223 1.02574 1.43514 1.03947 1.63215 1.07162 1.19266 1.11862 1.10354 1.08608 0.88971 1.25908 1.02080 0.93322 0.95067 1.70119 1.29783 1.04415 1.45731 0.85600 0.80117 0.79303 0.77306 1.22321 1.21069 1.17076 1.21427 0.89172 0.81040 0.84561 1.90495 1.17431 1.53761 1.84559 1.21940 0.91884 0.96152 0.86647 0.90851 1.20798 0.98821 0.94234 0.97093 1.19675 0.93855 1.00886 0.94261 1.21157 1.00023 0.99234 0.92380 1.21409 0.94158 0.99767 0.98986 1.21465 0.95197 0.99602 0.97892 1.21374 1.00602 0.99780 0.92476 1.21159 0.92827 1.00929 0.99571 1.87844 1.73416 1.19706 1.47833 1.22820 1.01360 0.80487 1.01442 0.85087 0.92015 0.91588 0.86373 0.86167 0.91789 0.90758 0.93045 0.88248 0.90560 0.86674 0.84198 0.83535 0.84070 0.86461 0.92638 0.96765 0.87640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.36 -8.46 10.57 -51.50 -0.54 -9.01 16 3 C 0.47 13.24 7.96 71.24 0.57 13.80 16 4 O -0.53 -17.02 15.64 21.98 0.34 -16.68 16 5 C -0.13 -3.84 5.42 29.85 0.16 -3.68 16 6 C 0.12 4.50 4.27 86.38 0.37 4.87 16 7 N -0.46 -22.00 2.53 -635.53 -1.61 -23.61 16 8 C -0.37 -19.99 8.98 84.04 0.76 -19.24 16 9 H 0.09 4.58 8.00 -2.91 -0.02 4.56 16 10 C 0.04 2.49 3.91 84.93 0.33 2.82 16 11 N -0.87 -52.07 12.86 21.66 0.28 -51.79 16 12 Si 0.95 45.51 29.66 68.60 2.03 47.54 16 13 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 14 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 15 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 16 C 0.45 22.68 6.43 87.66 0.56 23.25 16 17 O -0.58 -35.13 14.85 15.52 0.23 -34.90 16 18 C 0.10 3.82 1.73 29.85 0.05 3.87 16 19 H 0.07 2.84 6.23 -2.39 -0.01 2.82 16 20 C -0.07 -2.36 4.90 29.85 0.15 -2.22 16 21 C -0.09 -2.48 4.97 -19.87 -0.10 -2.58 16 22 C -0.11 -2.97 9.03 22.27 0.20 -2.77 16 23 C -0.13 -2.71 10.05 22.27 0.22 -2.48 16 24 C -0.12 -2.37 10.05 22.27 0.22 -2.14 16 25 C -0.12 -2.59 10.05 22.27 0.22 -2.36 16 26 C -0.13 -3.21 9.68 22.27 0.22 -2.99 16 27 O -0.37 -15.09 8.97 -130.36 -1.17 -16.26 16 28 C 0.04 1.27 10.81 113.37 1.23 2.49 16 29 H 0.13 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 31 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 32 H 0.12 3.30 5.71 -2.38 -0.01 3.29 16 33 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 34 H 0.06 2.62 8.13 -2.38 -0.02 2.60 16 35 H 0.07 2.71 5.27 -2.38 -0.01 2.70 16 36 H 0.26 15.19 8.32 -92.70 -0.77 14.42 16 37 H 0.10 2.97 3.79 -2.39 -0.01 2.96 16 38 H 0.08 2.62 8.12 -2.39 -0.02 2.60 16 39 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16 40 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 42 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 43 H 0.12 2.91 8.06 -2.91 -0.02 2.89 16 44 H 0.06 1.71 8.08 -2.39 -0.02 1.69 16 45 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -75.69 385.97 6.91 -68.79 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.98 Total: 23.65 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 6.36 Total: 12.27 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -1.33 Total: -75.40 kcal Atomic # 8 Polarization: -75.71 SS G_CDS: -1.14 Total: -76.85 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -75.69 6.91 -68.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871345039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.389 kcal (2) G-P(sol) polarization free energy of solvation -75.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds