Wall clock time and date at job start Tue Mar 31 2020 19:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 117.00284 * 2 1 4 4 O 1.20825 * 120.00116 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00292 * 179.97438 * 3 2 1 6 6 O 1.42910 * 112.93360 * 23.43800 * 5 3 2 7 7 C 1.53935 * 113.73346 * 154.99654 * 5 3 2 8 8 N 1.47962 * 86.30001 * 138.02887 * 7 5 3 9 9 C 1.46897 * 111.00037 * 222.47236 * 8 7 5 10 10 C 1.50703 * 109.46834 * 169.99844 * 9 8 7 11 11 C 1.38295 * 119.96868 * 90.00535 * 10 9 8 12 12 C 1.38244 * 120.10970 * 179.97438 * 11 10 9 13 13 C 1.38167 * 120.05540 * 359.97438 * 12 11 10 14 14 C 1.38712 * 119.94334 * 0.02782 * 13 12 11 15 15 O 1.35902 * 120.05308 * 180.02562 * 14 13 12 16 16 C 1.42904 * 117.00261 * 0.02562 * 15 14 13 17 17 C 1.52998 * 109.47199 * 180.02562 * 16 15 14 18 18 C 1.50694 * 109.47052 * 179.97438 * 17 16 15 19 19 H 1.08007 * 120.00208 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00289 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00324 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99833 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47452 * 89.99849 * 22 20 18 24 24 H 1.48504 * 109.47359 * 210.00098 * 22 20 18 25 25 H 1.48503 * 109.46973 * 329.99884 * 22 20 18 26 26 C 1.38117 * 119.97496 * 269.72195 * 10 9 8 27 27 C 1.48187 * 90.67343 * 335.41160 * 8 7 5 28 28 H 1.09004 * 109.47160 * 59.99841 * 1 2 3 29 29 H 1.08995 * 109.47416 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47004 * 300.00077 * 1 2 3 31 31 H 0.96695 * 113.99750 * 311.56242 * 6 5 3 32 32 H 1.09002 * 113.76229 * 252.40284 * 7 5 3 33 33 H 1.09005 * 113.75703 * 23.65809 * 7 5 3 34 34 H 1.08999 * 109.47312 * 289.99731 * 9 8 7 35 35 H 1.08999 * 109.46989 * 50.00663 * 9 8 7 36 36 H 1.08000 * 119.94221 * 359.97404 * 11 10 9 37 37 H 1.08001 * 119.97460 * 180.02562 * 12 11 10 38 38 H 1.08004 * 120.02634 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.46578 * 299.99958 * 16 15 14 40 40 H 1.08998 * 109.47006 * 59.99473 * 16 15 14 41 41 H 1.09006 * 109.46377 * 299.99143 * 17 16 15 42 42 H 1.08994 * 109.47176 * 59.99220 * 17 16 15 43 43 H 0.97002 * 120.00376 * 180.02562 * 21 20 18 44 44 H 1.08004 * 120.02806 * 0.02562 * 26 10 9 45 45 H 1.09005 * 113.65869 * 270.26633 * 27 8 7 46 46 H 1.09002 * 113.92722 * 138.95266 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 8 4.1859 0.0979 -0.5224 7 6 4.1185 2.5824 -0.5951 8 7 5.0865 2.5711 0.5239 9 6 5.2439 3.9142 1.0975 10 6 6.0371 3.8247 2.3758 11 6 7.4157 3.9295 2.3421 12 6 8.1462 3.8483 3.5129 13 6 7.5002 3.6627 4.7201 14 6 6.1176 3.5573 4.7565 15 8 5.4799 3.3752 5.9428 16 6 6.2960 3.3020 7.1136 17 6 5.4079 3.0961 8.3422 18 6 6.2685 3.0182 9.5768 19 1 7.3417 3.1064 9.4934 20 6 5.6860 2.8345 10.8128 21 7 6.4371 2.7661 11.8902 22 14 3.8298 2.6827 10.9573 23 1 3.4390 1.2551 10.8369 24 1 3.3914 3.2064 12.2759 25 1 3.1834 3.4659 9.8738 26 6 5.3864 3.6439 3.5805 27 6 4.1615 1.7486 1.3387 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.8419 -0.7258 -0.1509 32 1 4.5789 2.4586 -1.5753 33 1 3.4142 3.4136 -0.5581 34 1 5.7694 4.5531 0.3878 35 1 4.2614 4.3365 1.3085 36 1 7.9224 4.0750 1.3995 37 1 9.2227 3.9308 3.4841 38 1 8.0714 3.5998 5.6346 39 1 6.9886 2.4653 7.0219 40 1 6.8587 4.2291 7.2228 41 1 4.7151 3.9326 8.4340 42 1 4.8455 2.1689 8.2327 43 1 6.0273 2.6364 12.7598 44 1 4.3094 3.5663 3.6068 45 1 3.4705 2.3364 1.9431 46 1 4.6546 0.9581 1.9045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877768994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:19 Heat of formation + Delta-G solvation = -105.198727 kcal Electronic energy + Delta-G solvation = -28214.150787 eV Core-core repulsion = 24070.842543 eV Total energy + Delta-G solvation = -4143.308244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.74379 -40.16184 -39.54745 -37.44360 -37.04458 -36.01729 -33.39067 -32.32115 -31.13752 -29.69577 -29.14599 -28.07477 -26.78040 -25.62037 -24.93976 -22.61303 -22.34028 -21.28923 -20.36277 -20.16772 -19.02856 -17.82625 -17.60620 -17.12967 -16.68025 -16.51569 -16.07338 -15.75794 -15.46426 -15.35503 -15.13074 -14.87743 -14.20282 -14.11690 -13.85112 -13.64969 -13.39387 -13.25622 -13.13779 -12.83803 -12.71048 -12.60976 -12.43879 -12.21697 -11.80559 -11.61742 -11.42708 -11.38275 -11.33787 -11.09620 -10.84876 -10.68288 -10.40562 -10.21411 -10.01991 -9.84541 -9.37431 -9.34446 -8.77053 -8.65044 -7.93481 -6.16099 -4.17185 1.33952 1.49297 1.61451 2.04196 3.16565 3.25953 3.33382 3.38541 3.54461 3.69891 3.71061 3.90059 4.19544 4.36412 4.46591 4.49030 4.63100 4.72171 4.82615 4.87079 5.00532 5.06446 5.11011 5.17923 5.18784 5.23422 5.31163 5.39776 5.44305 5.55845 5.64683 5.77059 5.87360 5.88835 5.93425 6.08466 6.38155 6.40910 6.48700 6.59777 6.65283 6.84841 6.89865 7.07382 7.17439 7.19668 7.59523 7.87837 8.35972 8.84522 9.44071 10.96414 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011177 B = 0.002503 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.619785 B =11181.878091 C =13134.567161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.446 3.554 4 O -0.495 6.495 5 C 0.112 3.888 6 O -0.512 6.512 7 C 0.030 3.970 8 N -0.454 5.454 9 C 0.060 3.940 10 C -0.049 4.049 11 C -0.146 4.146 12 C -0.079 4.079 13 C -0.208 4.208 14 C 0.144 3.856 15 O -0.321 6.321 16 C 0.073 3.927 17 C -0.009 4.009 18 C -0.527 4.527 19 H 0.075 0.925 20 C 0.072 3.928 21 N -0.897 5.897 22 Si 0.881 3.119 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.263 1.263 26 C -0.156 4.156 27 C -0.002 4.002 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.392 0.608 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.131 0.869 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.027 0.973 42 H 0.023 0.977 43 H 0.266 0.734 44 H 0.122 0.878 45 H 0.088 0.912 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.972 -3.006 -28.477 29.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.287 3.713 4 O -0.382 6.382 5 C 0.068 3.932 6 O -0.318 6.318 7 C -0.098 4.098 8 N -0.177 5.177 9 C -0.067 4.067 10 C -0.050 4.050 11 C -0.165 4.165 12 C -0.097 4.097 13 C -0.227 4.227 14 C 0.098 3.902 15 O -0.234 6.234 16 C -0.001 4.001 17 C -0.046 4.046 18 C -0.565 4.565 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.535 5.535 22 Si 0.707 3.293 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.188 1.188 26 C -0.176 4.176 27 C -0.131 4.131 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.241 0.759 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.149 0.851 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.076 0.924 44 H 0.140 0.860 45 H 0.106 0.894 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.404 -2.518 -28.666 29.480 hybrid contribution -2.008 -0.126 0.948 2.224 sum -8.411 -2.645 -27.718 29.086 Atomic orbital electron populations 1.23350 0.75573 1.04141 1.02828 1.86460 1.24156 1.33189 1.83579 1.24527 0.92329 0.81950 0.72469 1.90696 1.66481 1.36325 1.44658 1.22723 0.82472 0.90017 0.97993 1.86580 1.63241 1.14876 1.67123 1.24206 0.94221 0.92602 0.98802 1.68819 1.33539 1.11028 1.04268 1.21629 0.99333 0.91310 0.94448 1.19248 0.93848 0.99161 0.92718 1.20784 0.93041 1.04615 0.98090 1.20921 0.99646 0.97326 0.91850 1.21429 0.93751 1.07817 0.99659 1.19073 0.90935 0.93681 0.86542 1.86115 1.37780 1.86015 1.13512 1.23082 0.94433 1.00467 0.82154 1.19580 0.96231 0.97652 0.91133 1.20835 0.95010 1.51326 0.89333 0.90731 1.24930 0.98357 0.94176 0.95530 1.69890 1.35635 1.49436 0.98563 0.86758 0.85850 0.78963 0.77692 1.20053 1.21153 1.18794 1.20236 0.99674 1.07712 0.89937 1.24725 0.94916 0.99224 0.94265 0.91680 0.87684 0.91544 0.75868 0.87104 0.88233 0.88898 0.92617 0.86174 0.85955 0.85075 0.92500 0.92482 0.95449 0.95883 0.92422 0.86008 0.89444 0.87044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.88 9.89 -44.12 -0.44 -3.31 16 3 C 0.45 4.22 7.28 36.01 0.26 4.49 16 4 O -0.49 -5.78 15.82 -18.75 -0.30 -6.08 16 5 C 0.11 0.98 1.87 -90.83 -0.17 0.81 16 6 O -0.51 -4.28 13.45 -47.87 -0.64 -4.92 16 7 C 0.03 0.25 7.27 -2.77 -0.02 0.23 16 8 N -0.45 -4.47 6.26 -238.75 -1.49 -5.97 16 9 C 0.06 0.58 4.97 -4.98 -0.02 0.56 16 10 C -0.05 -0.60 5.12 -104.64 -0.54 -1.13 16 11 C -0.15 -1.75 9.70 -39.56 -0.38 -2.13 16 12 C -0.08 -1.01 10.04 -39.61 -0.40 -1.41 16 13 C -0.21 -3.14 9.04 -39.43 -0.36 -3.50 16 14 C 0.14 2.39 6.69 -39.22 -0.26 2.13 16 15 O -0.32 -6.21 10.14 -19.43 -0.20 -6.40 16 16 C 0.07 1.49 4.68 37.16 0.17 1.66 16 17 C -0.01 -0.21 4.41 -27.89 -0.12 -0.33 16 18 C -0.53 -14.78 9.66 -34.44 -0.33 -15.11 16 19 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 20 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 21 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 22 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 26 C -0.16 -2.22 8.92 -39.44 -0.35 -2.57 16 27 C 0.00 -0.02 6.37 -2.65 -0.02 -0.04 16 28 H 0.06 0.37 8.13 -51.93 -0.42 -0.06 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.41 8.13 -51.93 -0.42 -0.02 16 31 H 0.39 1.97 8.52 45.56 0.39 2.36 16 32 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.10 0.80 7.04 -51.93 -0.37 0.43 16 34 H 0.09 0.76 8.08 -51.93 -0.42 0.34 16 35 H 0.06 0.51 7.63 -51.93 -0.40 0.12 16 36 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.13 1.97 6.30 -52.48 -0.33 1.64 16 39 H 0.06 1.12 7.66 -51.93 -0.40 0.72 16 40 H 0.06 1.13 7.66 -51.93 -0.40 0.73 16 41 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 42 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 44 H 0.12 1.62 7.46 -52.48 -0.39 1.23 16 45 H 0.09 0.85 7.07 -51.93 -0.37 0.48 16 46 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -33.32 385.08 -8.72 -42.04 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.99 Total: 1.50 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -1.57 Total: -13.09 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: -0.72 Total: -32.34 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -1.57 Total: -20.72 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.32 -8.72 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877768994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.154 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds