Wall clock time and date at job start Tue Mar 31 2020 19:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 117.00284 * 2 1 4 4 O 1.20825 * 120.00116 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00292 * 179.97438 * 3 2 1 6 6 O 1.42910 * 112.93360 * 23.43800 * 5 3 2 7 7 C 1.53935 * 113.73346 * 154.99654 * 5 3 2 8 8 N 1.47962 * 86.30001 * 138.02887 * 7 5 3 9 9 C 1.46897 * 111.00037 * 222.47236 * 8 7 5 10 10 C 1.50703 * 109.46834 * 169.99844 * 9 8 7 11 11 C 1.38295 * 119.96868 * 90.00535 * 10 9 8 12 12 C 1.38244 * 120.10970 * 179.97438 * 11 10 9 13 13 C 1.38167 * 120.05540 * 359.97438 * 12 11 10 14 14 C 1.38712 * 119.94334 * 0.02782 * 13 12 11 15 15 O 1.35902 * 120.05308 * 180.02562 * 14 13 12 16 16 C 1.42904 * 117.00261 * 0.02562 * 15 14 13 17 17 C 1.52998 * 109.47199 * 180.02562 * 16 15 14 18 18 C 1.50694 * 109.47052 * 179.97438 * 17 16 15 19 19 H 1.08007 * 120.00208 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00289 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00324 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99833 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47452 * 89.99849 * 22 20 18 24 24 H 1.48504 * 109.47359 * 210.00098 * 22 20 18 25 25 H 1.48503 * 109.46973 * 329.99884 * 22 20 18 26 26 C 1.38117 * 119.97496 * 269.72195 * 10 9 8 27 27 C 1.48187 * 90.67343 * 335.41160 * 8 7 5 28 28 H 1.09004 * 109.47160 * 59.99841 * 1 2 3 29 29 H 1.08995 * 109.47416 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47004 * 300.00077 * 1 2 3 31 31 H 0.96695 * 113.99750 * 311.56242 * 6 5 3 32 32 H 1.09002 * 113.76229 * 252.40284 * 7 5 3 33 33 H 1.09005 * 113.75703 * 23.65809 * 7 5 3 34 34 H 1.08999 * 109.47312 * 289.99731 * 9 8 7 35 35 H 1.08999 * 109.46989 * 50.00663 * 9 8 7 36 36 H 1.08000 * 119.94221 * 359.97404 * 11 10 9 37 37 H 1.08001 * 119.97460 * 180.02562 * 12 11 10 38 38 H 1.08004 * 120.02634 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.46578 * 299.99958 * 16 15 14 40 40 H 1.08998 * 109.47006 * 59.99473 * 16 15 14 41 41 H 1.09006 * 109.46377 * 299.99143 * 17 16 15 42 42 H 1.08994 * 109.47176 * 59.99220 * 17 16 15 43 43 H 0.97002 * 120.00376 * 180.02562 * 21 20 18 44 44 H 1.08004 * 120.02806 * 0.02562 * 26 10 9 45 45 H 1.09005 * 113.65869 * 270.26633 * 27 8 7 46 46 H 1.09002 * 113.92722 * 138.95266 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 8 4.1859 0.0979 -0.5224 7 6 4.1185 2.5824 -0.5951 8 7 5.0865 2.5711 0.5239 9 6 5.2439 3.9142 1.0975 10 6 6.0371 3.8247 2.3758 11 6 7.4157 3.9295 2.3421 12 6 8.1462 3.8483 3.5129 13 6 7.5002 3.6627 4.7201 14 6 6.1176 3.5573 4.7565 15 8 5.4799 3.3752 5.9428 16 6 6.2960 3.3020 7.1136 17 6 5.4079 3.0961 8.3422 18 6 6.2685 3.0182 9.5768 19 1 7.3417 3.1064 9.4934 20 6 5.6860 2.8345 10.8128 21 7 6.4371 2.7661 11.8902 22 14 3.8298 2.6827 10.9573 23 1 3.4390 1.2551 10.8369 24 1 3.3914 3.2064 12.2759 25 1 3.1834 3.4659 9.8738 26 6 5.3864 3.6439 3.5805 27 6 4.1615 1.7486 1.3387 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.8419 -0.7258 -0.1509 32 1 4.5789 2.4586 -1.5753 33 1 3.4142 3.4136 -0.5581 34 1 5.7694 4.5531 0.3878 35 1 4.2614 4.3365 1.3085 36 1 7.9224 4.0750 1.3995 37 1 9.2227 3.9308 3.4841 38 1 8.0714 3.5998 5.6346 39 1 6.9886 2.4653 7.0219 40 1 6.8587 4.2291 7.2228 41 1 4.7151 3.9326 8.4340 42 1 4.8455 2.1689 8.2327 43 1 6.0273 2.6364 12.7598 44 1 4.3094 3.5663 3.6068 45 1 3.4705 2.3364 1.9431 46 1 4.6546 0.9581 1.9045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877768994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:18 Heat of formation + Delta-G solvation = -129.585733 kcal Electronic energy + Delta-G solvation = -28215.208287 eV Core-core repulsion = 24070.842543 eV Total energy + Delta-G solvation = -4144.365744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.45060 -41.16933 -40.46159 -38.62334 -37.74777 -36.74119 -35.43679 -33.25121 -32.94515 -30.93292 -29.96851 -28.72936 -27.49723 -27.14365 -26.02206 -23.67024 -23.36304 -22.70093 -21.52341 -21.00839 -19.75349 -19.28664 -18.48346 -18.28622 -17.81031 -17.22326 -17.05195 -16.98700 -16.89319 -16.39103 -16.21828 -15.85741 -15.56223 -15.05276 -14.77267 -14.56253 -14.49442 -14.38613 -14.23430 -14.01994 -13.96949 -13.59918 -13.22354 -13.14102 -13.03407 -12.86167 -12.63349 -12.51637 -12.36166 -12.08523 -11.94381 -11.93812 -11.78002 -11.74294 -11.57977 -11.42608 -11.10337 -10.83512 -10.11621 -9.76317 -9.11948 -8.36708 -6.43653 0.29970 0.51908 0.77793 1.34241 1.35871 1.42797 1.48410 2.29639 2.31379 2.48394 2.77793 2.98197 3.00483 3.04615 3.55949 3.63777 3.77045 3.87406 4.05243 4.13286 4.19728 4.21626 4.23277 4.26513 4.26693 4.36826 4.42229 4.50113 4.53720 4.62584 4.64938 4.65387 4.69848 4.75004 5.05274 5.07539 5.12673 5.13409 5.27371 5.40080 5.47203 5.53575 5.59006 5.75796 5.88110 6.14241 6.32114 6.50481 6.58814 6.61995 7.21616 8.79037 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011177 B = 0.002503 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.619785 B =11181.878091 C =13134.567161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.449 3.551 4 O -0.521 6.521 5 C 0.119 3.881 6 O -0.519 6.519 7 C 0.034 3.966 8 N -0.462 5.462 9 C 0.062 3.938 10 C -0.045 4.045 11 C -0.138 4.138 12 C -0.079 4.079 13 C -0.222 4.222 14 C 0.109 3.891 15 O -0.337 6.337 16 C 0.088 3.912 17 C -0.006 4.006 18 C -0.537 4.537 19 H 0.042 0.958 20 C 0.014 3.986 21 N -0.942 5.942 22 Si 0.949 3.051 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.252 1.252 26 C -0.159 4.159 27 C -0.005 4.005 28 H 0.066 0.934 29 H 0.134 0.866 30 H 0.061 0.939 31 H 0.404 0.596 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.060 0.940 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.123 0.877 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.027 0.973 42 H 0.026 0.974 43 H 0.270 0.730 44 H 0.124 0.876 45 H 0.083 0.917 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.975 -3.204 -31.091 32.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.291 3.709 4 O -0.410 6.410 5 C 0.074 3.926 6 O -0.327 6.327 7 C -0.094 4.094 8 N -0.185 5.185 9 C -0.065 4.065 10 C -0.045 4.045 11 C -0.157 4.157 12 C -0.097 4.097 13 C -0.241 4.241 14 C 0.064 3.936 15 O -0.251 6.251 16 C 0.013 3.987 17 C -0.043 4.043 18 C -0.575 4.575 19 H 0.060 0.940 20 C -0.184 4.184 21 N -0.581 5.581 22 Si 0.772 3.228 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.175 1.175 26 C -0.178 4.178 27 C -0.134 4.134 28 H 0.084 0.916 29 H 0.152 0.848 30 H 0.079 0.921 31 H 0.256 0.744 32 H 0.139 0.861 33 H 0.122 0.878 34 H 0.132 0.868 35 H 0.078 0.922 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.141 0.859 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.079 0.921 44 H 0.142 0.858 45 H 0.101 0.899 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.402 -2.739 -31.308 32.287 hybrid contribution -1.618 -0.098 1.627 2.297 sum -9.020 -2.836 -29.680 31.150 Atomic orbital electron populations 1.23614 0.74274 1.06046 1.02650 1.86456 1.25446 1.32411 1.83071 1.24661 0.92600 0.81928 0.71707 1.90683 1.67085 1.37166 1.46043 1.22614 0.82070 0.90423 0.97477 1.86555 1.63392 1.15470 1.67321 1.24246 0.93923 0.92535 0.98745 1.68807 1.34034 1.10972 1.04677 1.21677 0.99483 0.91722 0.93609 1.19541 0.94362 0.97660 0.92945 1.21182 0.92986 1.02590 0.98926 1.21236 1.01067 0.96292 0.91119 1.21509 0.93321 1.08722 1.00575 1.19382 0.91886 0.96358 0.85991 1.86023 1.37899 1.87180 1.14018 1.22653 0.93539 1.00505 0.81980 1.19436 0.96054 0.97627 0.91191 1.21104 0.94171 1.50946 0.91302 0.93990 1.25873 1.03745 0.93743 0.95057 1.70022 1.38011 1.50788 0.99321 0.85679 0.79362 0.79624 0.78167 1.18857 1.20417 1.17536 1.20386 0.99914 1.07624 0.89923 1.24702 0.94931 0.99187 0.94609 0.91567 0.84800 0.92060 0.74356 0.86061 0.87830 0.86806 0.92196 0.83298 0.83411 0.85900 0.92471 0.92514 0.95504 0.95526 0.92058 0.85763 0.89935 0.87607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.26 9.89 -46.69 -0.46 -5.72 16 3 C 0.45 7.98 7.28 71.24 0.52 8.50 16 4 O -0.52 -11.73 15.82 21.97 0.35 -11.39 16 5 C 0.12 1.89 1.87 -10.90 -0.02 1.87 16 6 O -0.52 -7.75 13.45 -136.89 -1.84 -9.59 16 7 C 0.03 0.49 7.27 86.41 0.63 1.12 16 8 N -0.46 -8.07 6.26 -912.11 -5.71 -13.78 16 9 C 0.06 1.04 4.97 85.56 0.43 1.47 16 10 C -0.04 -0.99 5.12 -19.88 -0.10 -1.09 16 11 C -0.14 -2.89 9.70 22.28 0.22 -2.67 16 12 C -0.08 -1.86 10.04 22.25 0.22 -1.64 16 13 C -0.22 -6.67 9.04 22.37 0.20 -6.46 16 14 C 0.11 3.61 6.69 22.51 0.15 3.77 16 15 O -0.34 -13.19 10.14 -92.45 -0.94 -14.13 16 16 C 0.09 3.67 4.68 71.98 0.34 4.01 16 17 C -0.01 -0.27 4.41 29.85 0.13 -0.14 16 18 C -0.54 -30.92 9.66 25.60 0.25 -30.67 16 19 H 0.04 2.61 7.99 -2.91 -0.02 2.58 16 20 C 0.01 0.82 5.47 84.65 0.46 1.28 16 21 N -0.94 -58.23 13.96 21.45 0.30 -57.93 16 22 Si 0.95 44.17 27.47 68.60 1.88 46.06 16 23 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 25 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 26 C -0.16 -4.39 8.92 22.36 0.20 -4.19 16 27 C -0.01 -0.09 6.37 86.36 0.55 0.46 16 28 H 0.07 0.66 8.13 -2.38 -0.02 0.64 16 29 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.69 8.13 -2.38 -0.02 0.67 16 31 H 0.40 3.41 8.52 -74.06 -0.63 2.77 16 32 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.10 1.46 7.04 -2.38 -0.02 1.44 16 34 H 0.11 1.45 8.08 -2.39 -0.02 1.43 16 35 H 0.06 0.97 7.63 -2.39 -0.02 0.95 16 36 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 38 H 0.12 3.79 6.30 -2.91 -0.02 3.77 16 39 H 0.06 2.33 7.66 -2.39 -0.02 2.32 16 40 H 0.06 2.32 7.66 -2.39 -0.02 2.30 16 41 H 0.03 1.29 7.20 -2.38 -0.02 1.28 16 42 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 43 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.12 3.27 7.46 -2.91 -0.02 3.25 16 45 H 0.08 1.55 7.07 -2.38 -0.02 1.53 16 46 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -72.25 385.08 -0.74 -72.99 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.31 Total: 16.42 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: 5.37 Total: -22.93 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -5.41 Total: -71.71 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -2.89 Total: -40.82 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.06 kcal Total: -72.25 -0.74 -72.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877768994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.599 kcal (2) G-P(sol) polarization free energy of solvation -72.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds