Wall clock time and date at job start Tue Mar 31 2020 18:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34747 * 116.99862 * 2 1 4 4 O 1.21500 * 120.00017 * 359.97438 * 3 2 1 5 5 C 1.47469 * 119.99652 * 179.97438 * 3 2 1 6 6 C 1.39813 * 120.09445 * 0.02562 * 5 3 2 7 7 C 1.37658 * 119.90453 * 180.02562 * 6 5 3 8 8 C 1.39035 * 120.09262 * 359.97097 * 7 6 5 9 9 O 1.35699 * 119.90476 * 180.02562 * 8 7 6 10 10 C 1.42898 * 116.99999 * 359.97438 * 9 8 7 11 11 C 1.38988 * 120.18945 * 0.02868 * 8 7 6 12 12 C 1.50706 * 119.95542 * 179.97438 * 11 8 7 13 13 N 1.46896 * 109.46934 * 79.99753 * 12 11 8 14 14 C 1.47448 * 111.00165 * 69.87620 * 13 12 11 15 15 C 1.54313 * 107.23430 * 123.25293 * 14 13 12 16 16 C 1.55143 * 103.01983 * 22.28981 * 15 14 13 17 17 O 1.42890 * 110.99317 * 82.47260 * 16 15 14 18 18 C 1.50704 * 110.98975 * 206.25493 * 16 15 14 19 19 H 1.07999 * 119.99987 * 116.90159 * 18 16 15 20 20 C 1.37880 * 119.99899 * 296.89865 * 18 16 15 21 21 N 1.31512 * 119.99964 * 5.06555 * 20 18 16 22 22 Si 1.86798 * 120.00026 * 185.06135 * 20 18 16 23 23 H 1.48496 * 109.46765 * 84.99910 * 22 20 18 24 24 H 1.48494 * 109.47179 * 205.00296 * 22 20 18 25 25 H 1.48504 * 109.47164 * 325.00197 * 22 20 18 26 26 C 1.47844 * 110.99990 * 190.71547 * 13 12 11 27 27 C 1.37701 * 120.09145 * 359.71700 * 11 8 7 28 28 H 1.09003 * 109.47409 * 300.00216 * 1 2 3 29 29 H 1.09006 * 109.47053 * 60.00399 * 1 2 3 30 30 H 1.09001 * 109.46821 * 180.02562 * 1 2 3 31 31 H 1.07993 * 120.04441 * 0.02562 * 6 5 3 32 32 H 1.07994 * 119.95066 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47280 * 180.02562 * 10 9 8 34 34 H 1.09003 * 109.47286 * 299.99976 * 10 9 8 35 35 H 1.09002 * 109.47424 * 60.00036 * 10 9 8 36 36 H 1.08993 * 109.46719 * 199.99859 * 12 11 8 37 37 H 1.08995 * 109.46727 * 320.00174 * 12 11 8 38 38 H 1.09003 * 109.89007 * 242.66714 * 14 13 12 39 39 H 1.09003 * 109.88772 * 3.84934 * 14 13 12 40 40 H 1.09001 * 110.70575 * 140.66873 * 15 14 13 41 41 H 1.08998 * 110.70981 * 263.72613 * 15 14 13 42 42 H 0.96704 * 114.00361 * 54.61955 * 17 16 15 43 43 H 0.96998 * 120.00261 * 179.97438 * 21 20 18 44 44 H 1.08995 * 110.37290 * 332.47177 * 26 13 12 45 45 H 1.09005 * 110.37160 * 94.80928 * 26 13 12 46 46 H 1.08002 * 120.04849 * 180.27841 * 27 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5364 1.2777 0.0006 6 6 4.2998 0.1064 0.0006 7 6 5.6742 0.1830 0.0016 8 6 6.3034 1.4228 0.0021 9 8 7.6585 1.4938 0.0026 10 6 8.3730 0.2563 0.0032 11 6 5.5483 2.5897 0.0021 12 6 6.2357 3.9308 0.0032 13 7 6.6741 4.2574 -1.3603 14 6 5.5201 4.5458 -2.2316 15 6 5.7296 5.9589 -2.8151 16 6 7.2625 6.1640 -2.6922 17 8 7.9502 5.5510 -3.7844 18 6 7.6052 7.6284 -2.5958 19 1 8.0777 8.0149 -1.7048 20 6 7.3155 8.4748 -3.6450 21 7 6.6515 8.0260 -4.6877 22 14 7.8662 10.2587 -3.5854 23 1 9.2644 10.3617 -4.0747 24 1 6.9784 11.0799 -4.4472 25 1 7.7935 10.7528 -2.1868 26 6 7.5701 5.4334 -1.3613 27 6 4.1730 2.5221 -0.0043 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.8118 -0.8570 -0.0003 32 1 6.2646 -0.7213 0.0012 33 1 9.4446 0.4554 0.0041 34 1 8.1093 -0.3151 0.8933 35 1 8.1100 -0.3156 -0.8867 36 1 5.5418 4.6944 0.3545 37 1 7.1015 3.8947 0.6643 38 1 5.4727 3.8146 -3.0385 39 1 4.5994 4.5182 -1.6487 40 1 5.4186 5.9948 -3.8592 41 1 5.1903 6.7023 -2.2280 42 1 7.6410 5.8377 -4.6547 43 1 6.4474 8.6215 -5.4257 44 1 7.3479 6.0805 -0.5129 45 1 8.6127 5.1161 -1.3348 46 1 3.5869 3.4293 -0.0088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878761912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:53 Heat of formation + Delta-G solvation = -133.567751 kcal Electronic energy + Delta-G solvation = -29409.361980 eV Core-core repulsion = 25264.823563 eV Total energy + Delta-G solvation = -4144.538417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80726 -40.00912 -38.32128 -37.39325 -36.41699 -34.82806 -32.21119 -32.08419 -30.73084 -29.21757 -28.17851 -27.99571 -27.24076 -25.53189 -23.96341 -23.67674 -21.84976 -20.89477 -19.81283 -19.48808 -18.04789 -17.74327 -17.09816 -16.90072 -16.47004 -16.13159 -15.83786 -15.09090 -14.92722 -14.80653 -14.51142 -14.18604 -13.99257 -13.80260 -13.56972 -13.49164 -12.95019 -12.72552 -12.47691 -12.32410 -12.20264 -12.04648 -11.89586 -11.57948 -11.22027 -11.17194 -11.06746 -11.04556 -10.97013 -10.78467 -10.68648 -10.51849 -10.36317 -10.21569 -9.77295 -9.17045 -9.04761 -8.55871 -8.30248 -8.00399 -7.51235 -6.15077 -4.22320 0.69778 1.21361 2.47066 2.55688 3.18814 3.26617 3.32987 3.35571 3.64972 4.34399 4.54051 4.61795 4.66924 4.84235 4.89303 4.96926 4.97530 5.04975 5.08232 5.11875 5.22197 5.28711 5.39047 5.46252 5.56984 5.71801 5.83369 5.97078 5.98691 6.06750 6.12037 6.15174 6.20997 6.25428 6.37732 6.54922 6.58166 6.74819 6.94507 7.14664 7.27642 7.44744 7.55740 7.65265 7.71713 7.82858 7.88701 8.25293 8.79111 9.45755 9.53962 10.91828 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.003070 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.655179 B = 9119.352144 C =10613.370058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.513 3.487 4 O -0.509 6.509 5 C -0.175 4.175 6 C -0.023 4.023 7 C -0.230 4.230 8 C 0.192 3.808 9 O -0.290 6.290 10 C 0.024 3.976 11 C -0.112 4.112 12 C 0.097 3.903 13 N -0.517 5.517 14 C 0.042 3.958 15 C -0.144 4.144 16 C 0.252 3.748 17 O -0.576 6.576 18 C -0.534 4.534 19 H 0.060 0.940 20 C 0.072 3.928 21 N -0.893 5.893 22 Si 0.898 3.102 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.060 3.940 27 C -0.008 4.008 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.373 0.627 43 H 0.265 0.735 44 H 0.046 0.954 45 H 0.071 0.929 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.887 -18.969 10.333 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.359 3.641 4 O -0.398 6.398 5 C -0.176 4.176 6 C -0.042 4.042 7 C -0.249 4.249 8 C 0.144 3.856 9 O -0.201 6.201 10 C -0.071 4.071 11 C -0.113 4.113 12 C -0.031 4.031 13 N -0.241 5.241 14 C -0.085 4.085 15 C -0.183 4.183 16 C 0.212 3.788 17 O -0.383 6.383 18 C -0.573 4.573 19 H 0.078 0.922 20 C -0.130 4.130 21 N -0.532 5.532 22 Si 0.726 3.274 23 H -0.204 1.204 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.066 4.066 27 C -0.027 4.027 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.221 0.779 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.089 0.911 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.458 -19.183 10.474 22.527 hybrid contribution -0.840 1.686 -0.240 1.899 sum -6.298 -17.497 10.234 21.226 Atomic orbital electron populations 1.23254 0.76183 1.03548 1.02686 1.86532 1.23408 1.32941 1.84692 1.21128 0.89098 0.81294 0.72541 1.90850 1.66805 1.35953 1.46237 1.18833 0.88750 0.94769 1.15287 1.21121 0.92904 0.97751 0.92375 1.21183 0.95493 0.96762 1.11435 1.19156 0.83009 0.93126 0.90332 1.86211 1.15013 1.32272 1.86591 1.23135 0.97313 0.85476 1.01158 1.19166 0.91856 0.94423 1.05868 1.20998 0.98388 0.91005 0.92752 1.63632 1.15679 1.38034 1.06718 1.22879 0.91089 0.98532 0.96041 1.23279 1.00774 0.92735 1.01498 1.19527 0.86615 0.89617 0.83046 1.86169 1.64618 1.70087 1.17469 1.21513 1.40468 0.92861 1.02422 0.92200 1.24983 0.93777 0.98933 0.95313 1.69783 1.38880 1.36496 1.08048 0.86520 0.78710 0.84164 0.78031 1.20401 1.21249 1.19941 1.22990 0.96522 0.89063 0.98069 1.21013 0.92955 0.96901 0.91856 0.91906 0.91794 0.88125 0.84505 0.84664 0.87970 0.92763 0.92383 0.94040 0.89935 0.92013 0.94532 0.90498 0.92595 0.77870 0.92509 0.93577 0.91062 0.84094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.37 16 2 O -0.36 -3.99 9.81 -40.62 -0.40 -4.39 16 3 C 0.51 6.98 7.89 34.49 0.27 7.26 16 4 O -0.51 -8.25 16.13 -19.27 -0.31 -8.56 16 5 C -0.17 -2.31 5.87 -104.97 -0.62 -2.92 16 6 C -0.02 -0.25 9.61 -39.20 -0.38 -0.63 16 7 C -0.23 -2.50 9.01 -39.50 -0.36 -2.85 16 8 C 0.19 2.59 6.67 -39.01 -0.26 2.33 16 9 O -0.29 -3.89 9.71 -18.80 -0.18 -4.07 16 10 C 0.02 0.21 9.81 101.05 0.99 1.20 16 11 C -0.11 -1.67 4.96 -104.54 -0.52 -2.19 16 12 C 0.10 1.60 4.36 -4.98 -0.02 1.58 16 13 N -0.52 -10.28 5.15 -232.69 -1.20 -11.47 16 14 C 0.04 0.86 6.39 -2.84 -0.02 0.85 16 15 C -0.14 -3.40 5.33 -24.91 -0.13 -3.53 16 16 C 0.25 6.36 0.86 -89.63 -0.08 6.28 16 17 O -0.58 -15.30 13.14 -35.23 -0.46 -15.76 16 18 C -0.53 -14.52 8.26 -34.44 -0.28 -14.80 16 19 H 0.06 1.61 7.79 -52.49 -0.41 1.21 16 20 C 0.07 1.95 5.32 -17.82 -0.09 1.85 16 21 N -0.89 -24.23 10.85 55.43 0.60 -23.63 16 22 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 26 C 0.06 1.34 5.86 -2.30 -0.01 1.33 16 27 C -0.01 -0.12 8.35 -39.20 -0.33 -0.45 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.14 1.17 7.60 -52.49 -0.40 0.77 16 32 H 0.14 1.08 6.28 -52.49 -0.33 0.75 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.35 7.65 -51.93 -0.40 -0.04 16 35 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 36 H 0.04 0.67 7.82 -51.93 -0.41 0.27 16 37 H 0.08 1.31 7.78 -51.93 -0.40 0.91 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.04 0.69 6.17 -51.93 -0.32 0.37 16 40 H 0.08 1.93 7.47 -51.93 -0.39 1.54 16 41 H 0.06 1.36 8.04 -51.93 -0.42 0.94 16 42 H 0.37 9.89 7.71 45.56 0.35 10.24 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 45 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 46 H 0.14 2.09 7.20 -52.49 -0.38 1.71 16 LS Contribution 378.77 15.07 5.71 5.71 Total: -1.00 -31.39 378.77 -8.00 -39.38 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -5.96 Total: 10.17 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -0.77 Total: -3.34 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: -0.60 Total: -35.10 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -1.35 Total: -32.78 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.39 -8.00 -39.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878761912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.184 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds