Wall clock time and date at job start Tue Mar 31 2020 19:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34237 * 116.99680 * 2 1 4 4 O 1.20828 * 119.99716 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99751 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.47066 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47303 * 175.18913 * 6 5 3 8 8 C 1.36937 * 119.99807 * 263.86047 * 7 6 5 9 9 H 1.08001 * 120.00496 * 16.56420 * 8 7 6 10 10 C 1.38815 * 119.99988 * 196.57060 * 8 7 6 11 11 N 1.31619 * 119.99903 * 34.33269 * 10 8 7 12 12 Si 1.86797 * 120.00103 * 214.34014 * 10 8 7 13 13 H 1.48496 * 109.47209 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47192 * 119.99663 * 12 10 8 15 15 H 1.48504 * 109.47115 * 239.99454 * 12 10 8 16 16 C 1.46502 * 119.99970 * 83.85510 * 7 6 5 17 17 C 1.50698 * 109.47174 * 262.70740 * 16 7 6 18 18 C 1.38246 * 120.00395 * 279.81812 * 17 16 7 19 19 C 1.38218 * 120.00016 * 180.02562 * 18 17 16 20 20 C 1.38253 * 120.00037 * 359.95862 * 19 18 17 21 21 C 1.38214 * 120.00061 * 359.97438 * 20 19 18 22 22 C 1.38217 * 119.99578 * 99.98941 * 17 16 7 23 23 C 1.50706 * 120.00235 * 0.04195 * 22 17 16 24 24 C 1.50703 * 109.47181 * 87.37146 * 23 22 17 25 25 O 1.20827 * 119.99573 * 6.00724 * 24 23 22 26 26 O 1.34227 * 120.00310 * 186.00589 * 24 23 22 27 27 C 1.45200 * 117.00277 * 179.97438 * 26 24 23 28 28 H 1.09006 * 109.46815 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47281 * 299.99466 * 1 2 3 30 30 H 1.09001 * 109.47471 * 59.99835 * 1 2 3 31 31 H 1.08999 * 109.47388 * 60.00233 * 5 3 2 32 32 H 1.08997 * 109.47412 * 299.99904 * 5 3 2 33 33 H 1.09006 * 109.46731 * 55.18601 * 6 5 3 34 34 H 1.08998 * 109.46894 * 295.18970 * 6 5 3 35 35 H 0.96999 * 120.00463 * 184.97696 * 11 10 8 36 36 H 1.09002 * 109.46706 * 142.71173 * 16 7 6 37 37 H 1.09003 * 109.46737 * 22.71512 * 16 7 6 38 38 H 1.08001 * 120.00166 * 0.02562 * 18 17 16 39 39 H 1.07999 * 119.99984 * 179.97438 * 19 18 17 40 40 H 1.07996 * 120.00199 * 180.02562 * 20 19 18 41 41 H 1.07997 * 120.00226 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.47246 * 207.37120 * 23 22 17 43 43 H 1.08998 * 109.47065 * 327.37351 * 23 22 17 44 44 H 1.08999 * 109.46849 * 60.00193 * 27 26 24 45 45 H 1.09000 * 109.47006 * 180.02562 * 27 26 24 46 46 H 1.09000 * 109.46704 * 299.99956 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 -0.0011 7 7 5.4583 2.8204 0.1142 8 6 6.0390 3.0119 1.3395 9 1 5.4683 2.8406 2.2402 10 6 7.3611 3.4263 1.4238 11 7 7.8526 4.2466 0.5195 12 14 8.4428 2.8197 2.8208 13 1 7.6575 1.9143 3.6975 14 1 9.6055 2.0835 2.2627 15 1 8.9251 3.9796 3.6128 16 6 6.2955 2.6936 -1.0814 17 6 6.7901 1.2751 -1.2002 18 6 7.8696 0.8539 -0.4462 19 6 8.3235 -0.4470 -0.5556 20 6 7.6975 -1.3273 -1.4184 21 6 6.6173 -0.9067 -2.1712 22 6 6.1666 0.3961 -2.0656 23 6 4.9928 0.8565 -2.8912 24 6 5.4907 1.4636 -4.1775 25 8 6.6668 1.4198 -4.4507 26 8 4.6276 2.0530 -5.0197 27 6 5.1776 2.6169 -6.2395 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9556 0.7811 -0.8908 32 1 3.9563 0.7807 0.8891 33 1 3.5406 3.2572 0.8427 34 1 3.6832 3.2144 -0.9310 35 1 8.7942 4.4793 0.5363 36 1 7.1467 3.3698 -1.0022 37 1 5.7093 2.9493 -1.9641 38 1 8.3583 1.5414 0.2283 39 1 9.1671 -0.7759 0.0331 40 1 8.0519 -2.3439 -1.5036 41 1 6.1280 -1.5945 -2.8449 42 1 4.3505 0.0051 -3.1160 43 1 4.4262 1.6018 -2.3331 44 1 5.6600 1.8293 -6.8184 45 1 4.3752 3.0615 -6.8282 46 1 5.9103 3.3834 -5.9872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879473832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:02 Heat of formation + Delta-G solvation = -115.911208 kcal Electronic energy + Delta-G solvation = -30579.803919 eV Core-core repulsion = 26436.031147 eV Total energy + Delta-G solvation = -4143.772772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.46430 -40.15004 -38.85443 -36.53752 -36.24842 -35.77845 -32.99553 -32.18086 -31.01889 -29.69790 -28.54075 -27.51975 -26.65947 -25.69344 -24.35390 -21.94101 -21.80225 -20.85948 -20.00017 -19.69683 -17.69371 -17.32429 -16.90840 -16.55702 -16.45685 -16.32726 -16.10372 -15.64048 -15.11100 -14.55553 -14.34219 -14.12517 -13.63243 -13.43100 -13.32844 -13.24494 -13.15311 -12.78084 -12.66710 -12.30217 -12.15324 -12.00163 -11.87203 -11.64529 -11.54277 -11.26891 -10.97084 -10.82995 -10.68702 -10.68090 -10.52282 -10.31505 -10.28137 -10.20823 -10.10612 -9.98934 -9.84878 -8.70418 -8.19624 -7.92174 -7.04811 -5.90244 -3.31219 1.83461 2.10351 2.42620 2.49935 2.95895 2.97357 3.30956 3.43650 3.46317 4.36094 4.47020 4.87360 5.05897 5.11601 5.12885 5.13398 5.16022 5.18635 5.19404 5.24998 5.48060 5.51897 5.53107 5.55247 5.57887 5.60673 5.68174 5.73693 5.85186 6.10894 6.16382 6.25516 6.43537 6.46346 6.49223 6.58714 6.67363 6.76624 6.84765 7.02678 7.19034 7.41278 7.60525 7.68754 7.73149 7.95533 8.01583 8.24367 8.98454 9.67388 10.11676 11.04362 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.007305 B = 0.006010 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3832.229774 B = 4657.568326 C = 6470.731819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.365 6.365 3 C 0.462 3.538 4 O -0.511 6.511 5 C -0.148 4.148 6 C 0.158 3.842 7 N -0.573 5.573 8 C -0.250 4.250 9 H 0.076 0.924 10 C 0.004 3.996 11 N -0.869 5.869 12 Si 0.871 3.129 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.291 1.291 16 C 0.147 3.853 17 C -0.046 4.046 18 C -0.094 4.094 19 C -0.122 4.122 20 C -0.140 4.140 21 C -0.109 4.109 22 C -0.094 4.094 23 C -0.078 4.078 24 C 0.462 3.538 25 O -0.492 6.492 26 O -0.364 6.364 27 C 0.036 3.964 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.044 0.956 35 H 0.256 0.744 36 H 0.130 0.870 37 H 0.030 0.970 38 H 0.129 0.871 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.118 0.882 44 H 0.059 0.941 45 H 0.098 0.902 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.100 -9.230 -8.121 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.282 6.282 3 C 0.305 3.695 4 O -0.399 6.399 5 C -0.188 4.188 6 C 0.031 3.969 7 N -0.290 5.290 8 C -0.378 4.378 9 H 0.093 0.907 10 C -0.195 4.195 11 N -0.512 5.512 12 Si 0.699 3.301 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.219 1.219 16 C 0.021 3.979 17 C -0.049 4.049 18 C -0.113 4.113 19 C -0.140 4.140 20 C -0.158 4.158 21 C -0.127 4.127 22 C -0.094 4.094 23 C -0.115 4.115 24 C 0.304 3.696 25 O -0.378 6.378 26 O -0.281 6.281 27 C -0.058 4.058 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.147 0.853 37 H 0.048 0.952 38 H 0.147 0.853 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.136 0.864 44 H 0.078 0.922 45 H 0.116 0.884 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.841 -8.727 -8.190 14.308 hybrid contribution 0.571 -0.543 0.539 0.955 sum -7.270 -9.269 -7.651 14.047 Atomic orbital electron populations 1.23180 0.77391 1.03119 1.02299 1.86574 1.22738 1.34476 1.84435 1.24375 0.92648 0.80880 0.71548 1.90635 1.67424 1.36308 1.45539 1.22694 0.85046 1.05030 1.06011 1.20682 0.85183 0.90047 1.01006 1.43997 0.98888 1.81140 1.05022 1.19197 0.95720 1.38652 0.84251 0.90660 1.24507 0.99045 0.97927 0.97978 1.70076 1.13880 1.29646 1.37621 0.86747 0.81354 0.79159 0.82819 1.19950 1.21044 1.21863 1.20568 0.98717 0.91712 0.86859 1.20821 0.92981 0.98511 0.92564 1.21250 0.96177 0.95458 0.98375 1.21157 0.99745 0.94330 0.98796 1.20821 0.97305 0.99049 0.98644 1.20736 0.97417 0.95062 0.99519 1.19047 0.97279 0.94217 0.98906 1.20532 0.98440 1.02337 0.90240 1.23787 0.84966 0.75615 0.85242 1.90684 1.17955 1.54467 1.74714 1.86510 1.41704 1.68109 1.31786 1.23218 1.00292 0.98467 0.83842 0.88614 0.92186 0.92148 0.88045 0.87543 0.91428 0.93743 0.93391 0.85336 0.95185 0.85345 0.87132 0.87106 0.87261 0.87427 0.86440 0.92185 0.88374 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.55 101.05 1.07 1.42 16 2 O -0.37 -5.14 10.57 -39.28 -0.41 -5.55 16 3 C 0.46 7.44 7.96 36.00 0.29 7.73 16 4 O -0.51 -9.33 15.67 -18.75 -0.29 -9.63 16 5 C -0.15 -2.46 5.89 -27.88 -0.16 -2.62 16 6 C 0.16 3.10 4.43 -4.04 -0.02 3.08 16 7 N -0.57 -12.95 2.53 -174.60 -0.44 -13.39 16 8 C -0.25 -6.27 9.29 -15.06 -0.14 -6.41 16 9 H 0.08 1.89 8.02 -52.49 -0.42 1.47 16 10 C 0.00 0.11 3.29 -17.43 -0.06 0.05 16 11 N -0.87 -23.26 10.95 55.49 0.61 -22.65 16 12 Si 0.87 20.30 28.33 -169.99 -4.82 15.48 16 13 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 C 0.15 3.27 4.97 -5.19 -0.03 3.24 16 17 C -0.05 -0.94 5.42 -104.63 -0.57 -1.51 16 18 C -0.09 -1.98 9.35 -39.59 -0.37 -2.35 16 19 C -0.12 -2.21 10.05 -39.58 -0.40 -2.61 16 20 C -0.14 -2.25 10.05 -39.58 -0.40 -2.65 16 21 C -0.11 -1.76 9.69 -39.58 -0.38 -2.14 16 22 C -0.09 -1.65 3.64 -104.62 -0.38 -2.03 16 23 C -0.08 -1.19 3.96 -29.03 -0.12 -1.30 16 24 C 0.46 7.53 7.46 36.01 0.27 7.80 16 25 O -0.49 -9.42 15.80 -18.75 -0.30 -9.71 16 26 O -0.36 -5.22 10.56 -39.25 -0.41 -5.63 16 27 C 0.04 0.40 10.56 101.05 1.07 1.46 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 30 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.10 1.59 4.11 -51.93 -0.21 1.38 16 32 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 33 H 0.07 1.39 7.81 -51.93 -0.41 0.99 16 34 H 0.04 0.85 7.67 -51.93 -0.40 0.45 16 35 H 0.26 6.65 8.32 -40.82 -0.34 6.31 16 36 H 0.13 3.33 4.91 -51.93 -0.25 3.07 16 37 H 0.03 0.63 5.57 -51.93 -0.29 0.34 16 38 H 0.13 2.98 4.91 -52.49 -0.26 2.72 16 39 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 40 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 41 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.11 1.29 8.07 -51.93 -0.42 0.87 16 43 H 0.12 1.84 3.99 -51.93 -0.21 1.63 16 44 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 45 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -30.34 376.80 -6.95 -37.29 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.23 Total: 6.95 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -0.33 Total: 1.17 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.17 Total: -36.04 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -1.42 Total: -30.53 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.82 Total: 15.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.34 -6.95 -37.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879473832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.620 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds