Wall clock time and date at job start Tue Mar 31 2020 19:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34237 * 116.99680 * 2 1 4 4 O 1.20828 * 119.99716 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99751 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.47066 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47303 * 175.18913 * 6 5 3 8 8 C 1.36937 * 119.99807 * 263.86047 * 7 6 5 9 9 H 1.08001 * 120.00496 * 16.56420 * 8 7 6 10 10 C 1.38815 * 119.99988 * 196.57060 * 8 7 6 11 11 N 1.31619 * 119.99903 * 34.33269 * 10 8 7 12 12 Si 1.86797 * 120.00103 * 214.34014 * 10 8 7 13 13 H 1.48496 * 109.47209 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47192 * 119.99663 * 12 10 8 15 15 H 1.48504 * 109.47115 * 239.99454 * 12 10 8 16 16 C 1.46502 * 119.99970 * 83.85510 * 7 6 5 17 17 C 1.50698 * 109.47174 * 262.70740 * 16 7 6 18 18 C 1.38246 * 120.00395 * 279.81812 * 17 16 7 19 19 C 1.38218 * 120.00016 * 180.02562 * 18 17 16 20 20 C 1.38253 * 120.00037 * 359.95862 * 19 18 17 21 21 C 1.38214 * 120.00061 * 359.97438 * 20 19 18 22 22 C 1.38217 * 119.99578 * 99.98941 * 17 16 7 23 23 C 1.50706 * 120.00235 * 0.04195 * 22 17 16 24 24 C 1.50703 * 109.47181 * 87.37146 * 23 22 17 25 25 O 1.20827 * 119.99573 * 6.00724 * 24 23 22 26 26 O 1.34227 * 120.00310 * 186.00589 * 24 23 22 27 27 C 1.45200 * 117.00277 * 179.97438 * 26 24 23 28 28 H 1.09006 * 109.46815 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47281 * 299.99466 * 1 2 3 30 30 H 1.09001 * 109.47471 * 59.99835 * 1 2 3 31 31 H 1.08999 * 109.47388 * 60.00233 * 5 3 2 32 32 H 1.08997 * 109.47412 * 299.99904 * 5 3 2 33 33 H 1.09006 * 109.46731 * 55.18601 * 6 5 3 34 34 H 1.08998 * 109.46894 * 295.18970 * 6 5 3 35 35 H 0.96999 * 120.00463 * 184.97696 * 11 10 8 36 36 H 1.09002 * 109.46706 * 142.71173 * 16 7 6 37 37 H 1.09003 * 109.46737 * 22.71512 * 16 7 6 38 38 H 1.08001 * 120.00166 * 0.02562 * 18 17 16 39 39 H 1.07999 * 119.99984 * 179.97438 * 19 18 17 40 40 H 1.07996 * 120.00199 * 180.02562 * 20 19 18 41 41 H 1.07997 * 120.00226 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.47246 * 207.37120 * 23 22 17 43 43 H 1.08998 * 109.47065 * 327.37351 * 23 22 17 44 44 H 1.08999 * 109.46849 * 60.00193 * 27 26 24 45 45 H 1.09000 * 109.47006 * 180.02562 * 27 26 24 46 46 H 1.09000 * 109.46704 * 299.99956 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 -0.0011 7 7 5.4583 2.8204 0.1142 8 6 6.0390 3.0119 1.3395 9 1 5.4683 2.8406 2.2402 10 6 7.3611 3.4263 1.4238 11 7 7.8526 4.2466 0.5195 12 14 8.4428 2.8197 2.8208 13 1 7.6575 1.9143 3.6975 14 1 9.6055 2.0835 2.2627 15 1 8.9251 3.9796 3.6128 16 6 6.2955 2.6936 -1.0814 17 6 6.7901 1.2751 -1.2002 18 6 7.8696 0.8539 -0.4462 19 6 8.3235 -0.4470 -0.5556 20 6 7.6975 -1.3273 -1.4184 21 6 6.6173 -0.9067 -2.1712 22 6 6.1666 0.3961 -2.0656 23 6 4.9928 0.8565 -2.8912 24 6 5.4907 1.4636 -4.1775 25 8 6.6668 1.4198 -4.4507 26 8 4.6276 2.0530 -5.0197 27 6 5.1776 2.6169 -6.2395 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9556 0.7811 -0.8908 32 1 3.9563 0.7807 0.8891 33 1 3.5406 3.2572 0.8427 34 1 3.6832 3.2144 -0.9310 35 1 8.7942 4.4793 0.5363 36 1 7.1467 3.3698 -1.0022 37 1 5.7093 2.9493 -1.9641 38 1 8.3583 1.5414 0.2283 39 1 9.1671 -0.7759 0.0331 40 1 8.0519 -2.3439 -1.5036 41 1 6.1280 -1.5945 -2.8449 42 1 4.3505 0.0051 -3.1160 43 1 4.4262 1.6018 -2.3331 44 1 5.6600 1.8293 -6.8184 45 1 4.3752 3.0615 -6.8282 46 1 5.9103 3.3834 -5.9872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879473832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:01 Heat of formation + Delta-G solvation = -131.718939 kcal Electronic energy + Delta-G solvation = -30580.489394 eV Core-core repulsion = 26436.031147 eV Total energy + Delta-G solvation = -4144.458247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.72695 -41.38503 -40.21841 -37.91853 -37.46947 -37.25108 -34.50898 -33.69805 -32.60063 -31.20188 -29.70841 -28.54380 -27.86897 -27.30869 -25.89202 -23.37465 -23.16649 -22.23144 -21.39349 -21.09585 -19.10728 -18.62141 -18.46228 -17.78104 -17.67059 -17.55278 -17.31759 -16.97989 -16.69535 -16.11148 -15.73611 -15.60252 -15.22658 -14.80313 -14.57024 -14.49350 -14.36305 -14.12545 -14.04476 -13.61938 -13.35849 -13.32095 -13.10692 -12.95079 -12.87029 -12.77224 -12.72126 -12.46280 -12.15428 -12.00485 -11.85822 -11.78219 -11.72933 -11.67314 -11.55942 -11.53653 -11.40834 -10.57465 -9.56880 -9.35871 -8.92672 -7.82921 -5.26537 0.48120 0.71382 1.18564 1.22661 1.41266 1.49745 1.56421 1.82305 1.85880 2.53461 3.01335 3.17111 3.61750 3.72395 3.96654 4.02741 4.05447 4.15531 4.23505 4.26953 4.32575 4.32790 4.36057 4.37822 4.39448 4.43520 4.48241 4.63767 4.68777 4.71030 4.76710 4.79859 4.95315 4.99592 5.20181 5.25327 5.35233 5.39767 5.44427 5.64500 5.67316 5.73569 5.81163 6.00799 6.25923 6.40559 6.74914 6.78964 7.07614 7.81762 8.23279 9.08226 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.007305 B = 0.006010 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3832.229774 B = 4657.568326 C = 6470.731819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.472 3.528 4 O -0.537 6.537 5 C -0.133 4.133 6 C 0.160 3.840 7 N -0.583 5.583 8 C -0.251 4.251 9 H 0.070 0.930 10 C -0.028 4.028 11 N -0.898 5.898 12 Si 0.916 3.084 13 H -0.270 1.270 14 H -0.285 1.285 15 H -0.300 1.300 16 C 0.156 3.844 17 C -0.065 4.065 18 C -0.125 4.125 19 C -0.131 4.131 20 C -0.130 4.130 21 C -0.105 4.105 22 C -0.094 4.094 23 C -0.078 4.078 24 C 0.464 3.536 25 O -0.528 6.528 26 O -0.365 6.365 27 C 0.028 3.972 28 H 0.133 0.867 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.250 0.750 36 H 0.093 0.907 37 H 0.033 0.967 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.111 0.889 44 H 0.067 0.933 45 H 0.134 0.866 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 -12.419 -9.453 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.316 3.684 4 O -0.427 6.427 5 C -0.173 4.173 6 C 0.034 3.966 7 N -0.301 5.301 8 C -0.380 4.380 9 H 0.088 0.912 10 C -0.225 4.225 11 N -0.543 5.543 12 Si 0.745 3.255 13 H -0.194 1.194 14 H -0.212 1.212 15 H -0.228 1.228 16 C 0.031 3.969 17 C -0.068 4.068 18 C -0.144 4.144 19 C -0.149 4.149 20 C -0.148 4.148 21 C -0.123 4.123 22 C -0.095 4.095 23 C -0.115 4.115 24 C 0.308 3.692 25 O -0.416 6.416 26 O -0.281 6.281 27 C -0.065 4.065 28 H 0.151 0.849 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.134 0.866 32 H 0.120 0.880 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.109 0.891 37 H 0.052 0.948 38 H 0.115 0.885 39 H 0.143 0.857 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.167 0.833 43 H 0.129 0.871 44 H 0.086 0.914 45 H 0.152 0.848 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.632 -11.948 -9.527 18.063 hybrid contribution 1.003 0.419 0.855 1.383 sum -8.629 -11.529 -8.671 16.810 Atomic orbital electron populations 1.23552 0.75019 1.05644 1.02480 1.86535 1.24928 1.32781 1.83769 1.24019 0.92203 0.81182 0.70992 1.90634 1.67869 1.37313 1.46885 1.22320 0.86016 1.02471 1.06512 1.20643 0.83532 0.92104 1.00328 1.44084 1.00069 1.81611 1.04375 1.19331 0.95912 1.37584 0.85153 0.91216 1.24906 0.99814 0.98309 0.99426 1.70187 1.13517 1.31251 1.39331 0.86041 0.80252 0.78331 0.80906 1.19400 1.21166 1.22785 1.20272 0.97296 0.92732 0.86636 1.20593 0.93990 0.97769 0.94445 1.21170 0.97333 0.96621 0.99317 1.21360 1.00418 0.93445 0.99647 1.21256 0.96453 1.00246 0.96847 1.21203 0.97038 0.94786 0.99281 1.19234 0.97591 0.94540 0.98093 1.20599 0.97902 1.03659 0.89325 1.23959 0.84552 0.75072 0.85592 1.90675 1.19336 1.56006 1.75626 1.86497 1.41401 1.67653 1.32589 1.23536 1.01611 0.98459 0.82925 0.84940 0.92366 0.91721 0.86601 0.87985 0.93127 0.93506 0.94016 0.89062 0.94841 0.88490 0.85698 0.83325 0.83417 0.83303 0.87146 0.91438 0.84822 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.55 113.37 1.20 1.66 16 2 O -0.36 -9.21 10.57 -51.49 -0.54 -9.76 16 3 C 0.47 14.43 7.96 71.23 0.57 15.00 16 4 O -0.54 -19.10 15.67 21.96 0.34 -18.76 16 5 C -0.13 -4.31 5.89 29.85 0.18 -4.13 16 6 C 0.16 6.36 4.43 86.38 0.38 6.74 16 7 N -0.58 -27.13 2.53 -706.32 -1.79 -28.91 16 8 C -0.25 -13.01 9.29 84.03 0.78 -12.22 16 9 H 0.07 3.61 8.02 -2.91 -0.02 3.59 16 10 C -0.03 -1.48 3.29 84.86 0.28 -1.20 16 11 N -0.90 -50.59 10.95 21.65 0.24 -50.35 16 12 Si 0.92 43.28 28.33 68.60 1.94 45.22 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 14 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 15 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 16 C 0.16 7.20 4.97 85.63 0.43 7.62 16 17 C -0.07 -2.70 5.42 -19.87 -0.11 -2.81 16 18 C -0.13 -5.38 9.35 22.27 0.21 -5.17 16 19 C -0.13 -4.56 10.05 22.27 0.22 -4.34 16 20 C -0.13 -3.73 10.05 22.27 0.22 -3.50 16 21 C -0.11 -2.98 9.69 22.27 0.22 -2.77 16 22 C -0.09 -3.12 3.64 -19.86 -0.07 -3.19 16 23 C -0.08 -2.18 3.96 29.10 0.12 -2.06 16 24 C 0.46 14.37 7.46 71.24 0.53 14.91 16 25 O -0.53 -19.74 15.80 21.96 0.35 -19.40 16 26 O -0.36 -9.74 10.56 -51.38 -0.54 -10.29 16 27 C 0.03 0.57 10.56 113.37 1.20 1.76 16 28 H 0.13 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 30 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 31 H 0.12 3.41 4.11 -2.39 -0.01 3.40 16 32 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 33 H 0.05 2.14 7.81 -2.38 -0.02 2.12 16 34 H 0.05 1.81 7.67 -2.39 -0.02 1.79 16 35 H 0.25 13.78 8.32 -92.71 -0.77 13.01 16 36 H 0.09 5.02 4.91 -2.39 -0.01 5.01 16 37 H 0.03 1.45 5.57 -2.39 -0.01 1.44 16 38 H 0.10 4.72 4.91 -2.91 -0.01 4.70 16 39 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 40 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 41 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 42 H 0.15 2.87 8.07 -2.39 -0.02 2.85 16 43 H 0.11 3.28 3.99 -2.39 -0.01 3.27 16 44 H 0.07 1.28 8.13 -2.39 -0.02 1.26 16 45 H 0.13 1.73 8.14 -2.39 -0.02 1.72 16 46 H 0.05 1.20 8.13 -2.39 -0.02 1.18 16 Total: -1.00 -69.00 376.80 7.34 -61.66 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 1.00 Total: 24.28 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 6.34 Total: 6.30 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -1.55 Total: -79.27 kcal Atomic # 8 Polarization: -57.80 SS G_CDS: -0.40 Total: -58.19 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.94 Total: 45.22 kcal Total: -69.00 7.34 -61.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879473832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.060 kcal (2) G-P(sol) polarization free energy of solvation -69.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds