Wall clock time and date at job start Tue Mar 31 2020 18:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28402 * 125.20704 * 2 1 4 4 C 1.31385 * 111.06157 * 179.89556 * 3 2 1 5 5 C 1.39106 * 107.30493 * 0.24365 * 4 3 2 6 6 C 1.36692 * 125.20649 * 180.25166 * 2 1 3 7 7 C 1.47162 * 127.04006 * 0.08059 * 6 2 1 8 8 O 1.21630 * 120.00212 * 92.97031 * 7 6 2 9 9 N 1.34773 * 120.00283 * 272.96567 * 7 6 2 10 10 C 1.46507 * 120.00339 * 185.28670 * 9 7 6 11 11 H 1.09002 * 110.01364 * 326.39168 * 10 9 7 12 12 C 1.54267 * 110.03087 * 87.83458 * 10 9 7 13 13 C 1.54888 * 104.19308 * 95.67841 * 12 10 9 14 14 C 1.54889 * 102.75352 * 37.93981 * 13 12 10 15 15 H 1.08997 * 110.59802 * 80.78715 * 14 13 12 16 16 C 1.50693 * 110.49198 * 203.38090 * 14 13 12 17 17 H 1.08000 * 120.00116 * 114.77148 * 16 14 13 18 18 C 1.37879 * 119.99861 * 294.77567 * 16 14 13 19 19 N 1.31511 * 120.00176 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99987 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47192 * 89.99963 * 20 18 16 22 22 H 1.48506 * 109.47133 * 209.99921 * 20 18 16 23 23 H 1.48505 * 109.47140 * 329.99789 * 20 18 16 24 24 C 1.53872 * 110.03340 * 205.00405 * 10 9 7 25 25 C 1.50696 * 127.24453 * 180.02562 * 5 4 3 26 26 S 1.81920 * 108.21885 * 342.75282 * 25 5 4 27 27 C 1.81807 * 101.77466 * 44.88674 * 26 25 5 28 28 C 1.50566 * 125.08087 * 179.97438 * 4 3 2 29 29 H 1.09009 * 109.47255 * 274.49588 * 1 2 3 30 30 H 1.08999 * 109.46984 * 34.49049 * 1 2 3 31 31 H 1.08996 * 109.47652 * 154.49749 * 1 2 3 32 32 H 0.97003 * 120.00052 * 5.29418 * 9 7 6 33 33 H 1.08999 * 110.48423 * 214.35205 * 12 10 9 34 34 H 1.09001 * 110.48715 * 337.00052 * 12 10 9 35 35 H 1.09004 * 110.75347 * 279.62417 * 13 12 10 36 36 H 1.08995 * 110.75628 * 156.25578 * 13 12 10 37 37 H 0.96996 * 120.00598 * 180.02562 * 19 18 16 38 38 H 1.09003 * 110.03280 * 359.97438 * 24 10 9 39 39 H 1.09006 * 110.03299 * 121.38173 * 24 10 9 40 40 H 1.09000 * 109.71353 * 223.07379 * 25 5 4 41 41 H 1.09000 * 109.75085 * 102.45629 * 25 5 4 42 42 H 1.09000 * 109.53832 * 174.28560 * 27 26 25 43 43 H 1.09004 * 109.53479 * 54.05347 * 27 26 25 44 44 H 1.08994 * 109.20097 * 281.05670 * 28 4 3 45 45 H 1.09001 * 109.19782 * 40.35676 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2052 1.0491 0.0000 4 6 3.4792 0.7281 0.0022 5 6 3.5559 -0.6609 -0.0018 6 6 2.2530 -1.1169 -0.0049 7 6 1.8043 -2.5184 -0.0127 8 8 1.6720 -3.1088 -1.0679 9 7 1.5399 -3.1479 1.1493 10 6 1.2057 -4.5743 1.1502 11 1 0.6520 -4.8283 0.2463 12 6 2.4937 -5.4188 1.2372 13 6 2.6428 -5.7297 2.7473 14 6 1.1781 -5.9607 3.1950 15 1 0.8547 -6.9705 2.9424 16 6 1.0342 -5.7168 4.6751 17 1 0.4257 -4.8985 5.0309 18 6 1.6793 -6.5384 5.5750 19 7 2.4199 -7.5350 5.1418 20 14 1.5015 -6.2356 7.4097 21 1 0.3373 -6.9988 7.9268 22 1 2.7347 -6.6814 8.1068 23 1 1.2912 -4.7860 7.6542 24 6 0.3692 -4.9188 2.3949 25 6 4.8040 -1.5054 -0.0007 26 16 6.2014 -0.4558 -0.5057 27 6 5.9109 1.0464 0.4763 28 6 4.6195 1.7114 0.0023 29 1 -0.3634 0.0806 1.0246 30 1 -0.3633 0.8470 -0.5819 31 1 -0.3634 -0.9275 -0.4424 32 1 1.5709 -2.6565 1.9851 33 1 2.3843 -6.3412 0.6669 34 1 3.3498 -4.8469 0.8792 35 1 3.0788 -4.8814 3.2751 36 1 3.2396 -6.6289 2.8994 37 1 2.8735 -8.1132 5.7748 38 1 0.2123 -4.0249 2.9985 39 1 -0.5904 -5.3401 2.0950 40 1 4.6905 -2.3301 -0.7044 41 1 4.9821 -1.8982 1.0003 42 1 6.7452 1.7353 0.3442 43 1 5.8189 0.7813 1.5296 44 1 4.7634 2.0935 -1.0082 45 1 4.3777 2.5405 0.6674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880182978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:21 Heat of formation + Delta-G solvation = 27.475916 kcal Electronic energy + Delta-G solvation = -26993.195059 eV Core-core repulsion = 23330.685641 eV Total energy + Delta-G solvation = -3662.509418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.82330 -39.60427 -37.17965 -35.66127 -33.76113 -32.71780 -32.17225 -31.73203 -28.72695 -28.24151 -27.15336 -26.59224 -24.12070 -23.60946 -22.95002 -20.45453 -20.16524 -19.61615 -19.15918 -17.74229 -16.90287 -16.68871 -16.34160 -15.92627 -15.56343 -15.09737 -14.81749 -14.50910 -14.33882 -14.16165 -14.08355 -13.73104 -13.56437 -13.14846 -13.01125 -12.92137 -12.87337 -12.47098 -12.07010 -11.79961 -11.72298 -11.19773 -11.08332 -10.98806 -10.73252 -10.66071 -10.54685 -10.21216 -10.09446 -9.97559 -9.67394 -9.32741 -9.14399 -8.92333 -8.89267 -8.81871 -8.43055 -7.86400 -6.08067 -4.11672 1.42387 1.55931 1.94401 2.19652 2.38301 2.62718 3.23527 3.24812 3.32611 3.34067 4.05268 4.37212 4.45243 4.57757 4.62618 4.73534 4.79934 4.89739 5.08111 5.09768 5.11015 5.22889 5.25045 5.40801 5.42894 5.50173 5.56569 5.63536 5.66708 5.68213 6.11518 6.21293 6.23529 6.44765 6.49413 6.51002 6.61282 6.72772 6.83011 7.13464 7.23003 7.53170 7.62477 7.77371 7.82037 7.94187 8.12407 8.34412 8.90691 9.52942 11.01309 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.003165 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.550638 B = 8844.715787 C = 9414.948016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.268 5.268 3 N -0.280 5.280 4 C 0.036 3.964 5 C -0.160 4.160 6 C -0.008 4.008 7 C 0.585 3.415 8 O -0.525 6.525 9 N -0.696 5.696 10 C 0.137 3.863 11 H 0.081 0.919 12 C -0.137 4.137 13 C -0.099 4.099 14 C 0.048 3.952 15 H 0.034 0.966 16 C -0.517 4.517 17 H 0.054 0.946 18 C 0.064 3.936 19 N -0.887 5.887 20 Si 0.888 3.112 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.122 4.122 25 C -0.008 4.008 26 S -0.245 6.245 27 C -0.082 4.082 28 C -0.030 4.030 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.403 0.597 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.260 0.740 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.115 0.885 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.709 16.901 -9.486 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.055 5.055 3 N -0.112 5.112 4 C -0.121 4.121 5 C -0.172 4.172 6 C -0.139 4.139 7 C 0.367 3.633 8 O -0.400 6.400 9 N -0.346 5.346 10 C 0.034 3.966 11 H 0.099 0.901 12 C -0.176 4.176 13 C -0.138 4.138 14 C 0.030 3.970 15 H 0.052 0.948 16 C -0.555 4.555 17 H 0.072 0.928 18 C -0.138 4.138 19 N -0.525 5.525 20 Si 0.716 3.284 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.160 4.160 25 C -0.157 4.157 26 S -0.017 6.017 27 C -0.230 4.230 28 C -0.071 4.071 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.238 0.762 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.132 0.868 41 H 0.118 0.882 42 H 0.133 0.867 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.667 16.968 -10.906 20.240 hybrid contribution -0.608 -0.119 2.301 2.383 sum 1.059 16.849 -8.605 18.949 Atomic orbital electron populations 1.22238 0.72666 1.05607 1.04873 1.45479 1.07417 1.01725 1.50896 1.73183 1.03151 1.13297 1.21594 1.21596 0.92016 0.92474 1.06057 1.19922 0.92566 0.93643 1.11069 1.21370 0.91108 0.89442 1.11986 1.16995 0.77827 0.83656 0.84824 1.90846 1.51362 1.66824 1.30972 1.46364 1.68157 1.11867 1.08223 1.21950 0.97005 0.77587 1.00090 0.90098 1.22870 0.95664 0.98611 1.00412 1.22466 1.00642 1.00659 0.89986 1.19465 0.90261 0.93491 0.93795 0.94771 1.21137 1.29821 1.13901 0.90632 0.92768 1.24968 0.95156 0.95028 0.98640 1.69943 1.31145 1.17139 1.34269 0.86665 0.77551 0.78432 0.85742 1.20716 1.21239 1.20017 1.22624 0.98057 1.01156 0.94182 1.21704 0.90355 0.97917 1.05711 1.86942 1.36888 1.16315 1.61544 1.23345 1.00493 0.97263 1.01941 1.19865 0.88559 0.95240 1.03418 0.89184 0.88243 0.88603 0.76194 0.91669 0.93068 0.93434 0.91307 0.92981 0.92015 0.92562 0.86766 0.88170 0.86713 0.89210 0.89119 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 11.22 59.84 0.67 1.40 16 2 N -0.27 -3.33 3.75 -63.96 -0.24 -3.57 16 3 N -0.28 -3.66 11.91 33.57 0.40 -3.26 16 4 C 0.04 0.45 6.90 -82.53 -0.57 -0.11 16 5 C -0.16 -2.16 5.96 -104.37 -0.62 -2.78 16 6 C -0.01 -0.11 6.72 -82.15 -0.55 -0.67 16 7 C 0.59 8.90 6.82 -12.64 -0.09 8.82 16 8 O -0.52 -9.65 16.73 5.25 0.09 -9.56 16 9 N -0.70 -10.15 5.02 -53.87 -0.27 -10.42 16 10 C 0.14 2.27 3.29 -66.81 -0.22 2.05 16 11 H 0.08 1.36 7.49 -51.93 -0.39 0.97 16 12 C -0.14 -2.47 6.54 -25.07 -0.16 -2.63 16 13 C -0.10 -2.14 5.75 -24.74 -0.14 -2.28 16 14 C 0.05 1.11 2.72 -90.11 -0.25 0.86 16 15 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 16 C -0.52 -13.24 8.46 -34.44 -0.29 -13.53 16 17 H 0.05 1.36 7.54 -52.49 -0.40 0.97 16 18 C 0.06 1.70 5.35 -17.82 -0.10 1.60 16 19 N -0.89 -24.49 12.29 55.43 0.68 -23.81 16 20 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 C -0.12 -2.23 6.13 -25.61 -0.16 -2.38 16 25 C -0.01 -0.10 6.60 36.00 0.24 0.14 16 26 S -0.24 -2.79 22.27 -107.50 -2.39 -5.18 16 27 C -0.08 -0.69 6.44 37.05 0.24 -0.45 16 28 C -0.03 -0.28 6.07 -28.06 -0.17 -0.45 16 29 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.10 0.80 7.67 -51.93 -0.40 0.41 16 32 H 0.40 5.43 8.31 -40.82 -0.34 5.09 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.05 0.89 8.04 -51.93 -0.42 0.47 16 35 H 0.05 1.05 8.05 -51.93 -0.42 0.63 16 36 H 0.07 1.65 7.56 -51.93 -0.39 1.25 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 38 H 0.06 1.09 7.13 -51.93 -0.37 0.72 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.11 1.53 8.14 -51.93 -0.42 1.10 16 41 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 377.46 15.07 5.69 5.69 Total: -1.00 -30.73 377.46 -10.14 -40.87 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.91 Total: 4.23 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -2.17 Total: -10.41 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.57 Total: -41.06 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: -2.79 SS G_CDS: -2.39 Total: -5.18 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.73 -10.14 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880182978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.347 kcal (2) G-P(sol) polarization free energy of solvation -30.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds