Wall clock time and date at job start Tue Mar 31 2020 18:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28402 * 125.20704 * 2 1 4 4 C 1.31385 * 111.06157 * 179.89556 * 3 2 1 5 5 C 1.39106 * 107.30493 * 0.24365 * 4 3 2 6 6 C 1.36692 * 125.20649 * 180.25166 * 2 1 3 7 7 C 1.47162 * 127.04006 * 0.08059 * 6 2 1 8 8 O 1.21630 * 120.00212 * 92.97031 * 7 6 2 9 9 N 1.34773 * 120.00283 * 272.96567 * 7 6 2 10 10 C 1.46507 * 120.00339 * 185.28670 * 9 7 6 11 11 H 1.09002 * 110.01364 * 326.39168 * 10 9 7 12 12 C 1.54267 * 110.03087 * 87.83458 * 10 9 7 13 13 C 1.54888 * 104.19308 * 95.67841 * 12 10 9 14 14 C 1.54889 * 102.75352 * 37.93981 * 13 12 10 15 15 H 1.08997 * 110.59802 * 80.78715 * 14 13 12 16 16 C 1.50693 * 110.49198 * 203.38090 * 14 13 12 17 17 H 1.08000 * 120.00116 * 114.77148 * 16 14 13 18 18 C 1.37879 * 119.99861 * 294.77567 * 16 14 13 19 19 N 1.31511 * 120.00176 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99987 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47192 * 89.99963 * 20 18 16 22 22 H 1.48506 * 109.47133 * 209.99921 * 20 18 16 23 23 H 1.48505 * 109.47140 * 329.99789 * 20 18 16 24 24 C 1.53872 * 110.03340 * 205.00405 * 10 9 7 25 25 C 1.50696 * 127.24453 * 180.02562 * 5 4 3 26 26 S 1.81920 * 108.21885 * 342.75282 * 25 5 4 27 27 C 1.81807 * 101.77466 * 44.88674 * 26 25 5 28 28 C 1.50566 * 125.08087 * 179.97438 * 4 3 2 29 29 H 1.09009 * 109.47255 * 274.49588 * 1 2 3 30 30 H 1.08999 * 109.46984 * 34.49049 * 1 2 3 31 31 H 1.08996 * 109.47652 * 154.49749 * 1 2 3 32 32 H 0.97003 * 120.00052 * 5.29418 * 9 7 6 33 33 H 1.08999 * 110.48423 * 214.35205 * 12 10 9 34 34 H 1.09001 * 110.48715 * 337.00052 * 12 10 9 35 35 H 1.09004 * 110.75347 * 279.62417 * 13 12 10 36 36 H 1.08995 * 110.75628 * 156.25578 * 13 12 10 37 37 H 0.96996 * 120.00598 * 180.02562 * 19 18 16 38 38 H 1.09003 * 110.03280 * 359.97438 * 24 10 9 39 39 H 1.09006 * 110.03299 * 121.38173 * 24 10 9 40 40 H 1.09000 * 109.71353 * 223.07379 * 25 5 4 41 41 H 1.09000 * 109.75085 * 102.45629 * 25 5 4 42 42 H 1.09000 * 109.53832 * 174.28560 * 27 26 25 43 43 H 1.09004 * 109.53479 * 54.05347 * 27 26 25 44 44 H 1.08994 * 109.20097 * 281.05670 * 28 4 3 45 45 H 1.09001 * 109.19782 * 40.35676 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2052 1.0491 0.0000 4 6 3.4792 0.7281 0.0022 5 6 3.5559 -0.6609 -0.0018 6 6 2.2530 -1.1169 -0.0049 7 6 1.8043 -2.5184 -0.0127 8 8 1.6720 -3.1088 -1.0679 9 7 1.5399 -3.1479 1.1493 10 6 1.2057 -4.5743 1.1502 11 1 0.6520 -4.8283 0.2463 12 6 2.4937 -5.4188 1.2372 13 6 2.6428 -5.7297 2.7473 14 6 1.1781 -5.9607 3.1950 15 1 0.8547 -6.9705 2.9424 16 6 1.0342 -5.7168 4.6751 17 1 0.4257 -4.8985 5.0309 18 6 1.6793 -6.5384 5.5750 19 7 2.4199 -7.5350 5.1418 20 14 1.5015 -6.2356 7.4097 21 1 0.3373 -6.9988 7.9268 22 1 2.7347 -6.6814 8.1068 23 1 1.2912 -4.7860 7.6542 24 6 0.3692 -4.9188 2.3949 25 6 4.8040 -1.5054 -0.0007 26 16 6.2014 -0.4558 -0.5057 27 6 5.9109 1.0464 0.4763 28 6 4.6195 1.7114 0.0023 29 1 -0.3634 0.0806 1.0246 30 1 -0.3633 0.8470 -0.5819 31 1 -0.3634 -0.9275 -0.4424 32 1 1.5709 -2.6565 1.9851 33 1 2.3843 -6.3412 0.6669 34 1 3.3498 -4.8469 0.8792 35 1 3.0788 -4.8814 3.2751 36 1 3.2396 -6.6289 2.8994 37 1 2.8735 -8.1132 5.7748 38 1 0.2123 -4.0249 2.9985 39 1 -0.5904 -5.3401 2.0950 40 1 4.6905 -2.3301 -0.7044 41 1 4.9821 -1.8982 1.0003 42 1 6.7452 1.7353 0.3442 43 1 5.8189 0.7813 1.5296 44 1 4.7634 2.0935 -1.0082 45 1 4.3777 2.5405 0.6674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880182978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:20 Heat of formation + Delta-G solvation = 9.787323 kcal Electronic energy + Delta-G solvation = -26993.962094 eV Core-core repulsion = 23330.685641 eV Total energy + Delta-G solvation = -3663.276453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.77427 -40.91971 -38.71705 -36.47654 -35.33705 -34.00624 -33.39882 -32.72803 -30.08441 -29.66707 -28.58890 -27.42059 -25.90439 -24.41781 -24.13445 -21.59237 -21.29362 -21.04418 -20.67031 -18.83563 -18.55236 -17.76491 -17.36848 -17.07496 -16.75319 -16.58356 -16.09298 -15.84493 -15.56720 -15.20342 -15.10483 -14.79392 -14.62729 -14.49591 -14.05779 -13.87154 -13.75967 -13.60581 -13.58356 -12.95552 -12.83381 -12.76860 -12.59292 -12.55880 -12.40859 -12.25594 -11.70232 -11.66534 -11.45491 -11.30879 -11.09185 -11.02714 -10.81146 -10.45236 -10.17745 -10.10938 -9.81961 -8.74701 -8.09757 -6.18933 0.42632 0.69716 0.92231 1.34310 1.42330 1.44358 1.45590 1.52644 1.58574 2.09716 2.44994 3.20341 3.22006 3.41707 3.76602 3.79519 3.92067 3.96534 3.98916 4.09437 4.18455 4.21862 4.25766 4.26256 4.39867 4.49381 4.65779 4.69644 4.70435 4.74370 4.86089 4.89726 4.95819 4.96265 5.07049 5.16947 5.18526 5.33215 5.40997 5.57494 5.61384 5.67327 5.91307 6.00591 6.31270 6.38525 6.87064 6.90871 6.92873 7.48867 8.99004 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.003165 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.550638 B = 8844.715787 C = 9414.948016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.265 5.265 3 N -0.287 5.287 4 C 0.029 3.971 5 C -0.171 4.171 6 C -0.026 4.026 7 C 0.598 3.402 8 O -0.558 6.558 9 N -0.686 5.686 10 C 0.150 3.850 11 H 0.086 0.914 12 C -0.128 4.128 13 C -0.089 4.089 14 C 0.039 3.961 15 H 0.002 0.998 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.948 3.052 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.265 1.265 24 C -0.109 4.109 25 C -0.006 4.006 26 S -0.271 6.271 27 C -0.069 4.069 28 C -0.029 4.029 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.411 0.589 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.039 0.961 36 H 0.036 0.964 37 H 0.258 0.742 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.143 0.857 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 19.553 -9.157 21.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.053 5.053 3 N -0.119 5.119 4 C -0.128 4.128 5 C -0.183 4.183 6 C -0.158 4.158 7 C 0.381 3.619 8 O -0.435 6.435 9 N -0.337 5.337 10 C 0.046 3.954 11 H 0.105 0.895 12 C -0.166 4.166 13 C -0.127 4.127 14 C 0.020 3.980 15 H 0.021 0.979 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.186 4.186 19 N -0.559 5.559 20 Si 0.774 3.226 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.190 1.190 24 C -0.147 4.147 25 C -0.155 4.155 26 S -0.044 6.044 27 C -0.218 4.218 28 C -0.069 4.069 29 H 0.128 0.872 30 H 0.136 0.864 31 H 0.113 0.887 32 H 0.248 0.752 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.161 0.839 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.241 19.650 -10.563 22.344 hybrid contribution -0.494 -0.922 2.188 2.425 sum 0.746 18.728 -8.375 20.529 Atomic orbital electron populations 1.22569 0.70717 1.06432 1.06545 1.45826 1.08537 1.00993 1.49933 1.73188 1.03521 1.13411 1.21819 1.22131 0.92739 0.92614 1.05351 1.20139 0.92567 0.94448 1.11165 1.21184 0.91807 0.89104 1.13667 1.17029 0.76723 0.84029 0.84136 1.90830 1.52817 1.67772 1.32102 1.46186 1.67832 1.11011 1.08624 1.21656 0.95789 0.78449 0.99493 0.89545 1.22765 0.96904 0.99250 0.97699 1.22219 0.99271 0.98775 0.92435 1.19445 0.91806 0.93266 0.93465 0.97945 1.21550 1.29141 1.13614 0.92161 0.92336 1.25720 0.95136 0.95005 1.02714 1.70080 1.32264 1.18144 1.35395 0.85709 0.77218 0.78688 0.80945 1.20468 1.21499 1.18951 1.22427 0.98005 1.00096 0.94176 1.21607 0.90815 0.97800 1.05265 1.87013 1.36383 1.18293 1.62671 1.23464 1.01282 0.95710 1.01314 1.19999 0.87517 0.94981 1.04448 0.87239 0.86400 0.88699 0.75249 0.91479 0.92315 0.94200 0.94495 0.93258 0.91027 0.91332 0.88313 0.88129 0.83889 0.88791 0.88404 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 11.22 127.77 1.43 2.56 16 2 N -0.27 -6.13 3.75 -356.26 -1.34 -7.47 16 3 N -0.29 -6.90 11.91 -47.70 -0.57 -7.47 16 4 C 0.03 0.66 6.90 42.79 0.30 0.96 16 5 C -0.17 -4.44 5.96 -19.70 -0.12 -4.56 16 6 C -0.03 -0.71 6.72 40.68 0.27 -0.43 16 7 C 0.60 17.65 6.82 86.59 0.59 18.24 16 8 O -0.56 -20.22 16.73 -4.13 -0.07 -20.29 16 9 N -0.69 -19.12 5.02 -442.61 -2.22 -21.35 16 10 C 0.15 4.82 3.29 45.71 0.15 4.97 16 11 H 0.09 2.78 7.49 -2.39 -0.02 2.76 16 12 C -0.13 -4.58 6.54 31.67 0.21 -4.38 16 13 C -0.09 -3.90 5.75 31.88 0.18 -3.71 16 14 C 0.04 1.79 2.72 -10.47 -0.03 1.76 16 15 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 16 C -0.53 -26.97 8.46 25.60 0.22 -26.75 16 17 H 0.06 2.88 7.54 -2.91 -0.02 2.86 16 18 C 0.01 0.70 5.35 84.66 0.45 1.15 16 19 N -0.92 -51.98 12.29 21.45 0.26 -51.72 16 20 Si 0.95 41.91 29.54 68.60 2.03 43.93 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 C -0.11 -3.85 6.13 31.32 0.19 -3.66 16 25 C -0.01 -0.15 6.60 71.23 0.47 0.32 16 26 S -0.27 -5.90 22.27 -56.49 -1.26 -7.16 16 27 C -0.07 -0.99 6.44 71.91 0.46 -0.52 16 28 C -0.03 -0.45 6.07 29.74 0.18 -0.27 16 29 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.43 7.67 -2.39 -0.02 1.41 16 32 H 0.41 10.37 8.31 -92.71 -0.77 9.60 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.06 2.02 8.04 -2.39 -0.02 2.00 16 35 H 0.04 1.77 8.05 -2.39 -0.02 1.75 16 36 H 0.04 1.83 7.56 -2.39 -0.02 1.81 16 37 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 38 H 0.07 2.39 7.13 -2.39 -0.02 2.38 16 39 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 40 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -66.61 377.46 2.03 -64.58 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.23 Total: 21.25 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 4.96 Total: -14.32 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -3.86 Total: -88.00 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.07 Total: -20.29 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: -5.90 SS G_CDS: -1.26 Total: -7.16 kcal Total: -66.61 2.03 -64.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880182978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.367 kcal (2) G-P(sol) polarization free energy of solvation -66.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds