Wall clock time and date at job start Tue Mar 31 2020 18:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28404 * 125.20245 * 2 1 4 4 C 1.31393 * 111.06032 * 180.29878 * 3 2 1 5 5 C 1.39109 * 107.30261 * 359.62850 * 4 3 2 6 6 C 1.36695 * 125.20640 * 179.80998 * 2 1 3 7 7 C 1.47158 * 127.04635 * 0.06814 * 6 2 1 8 8 O 1.21629 * 119.99875 * 99.56563 * 7 6 2 9 9 N 1.34780 * 120.00013 * 279.29847 * 7 6 2 10 10 C 1.46925 * 120.63016 * 354.85598 * 9 7 6 11 11 C 1.52762 * 109.01026 * 233.58978 * 10 9 7 12 12 C 1.53041 * 109.38236 * 305.58944 * 11 10 9 13 13 C 1.53043 * 109.53833 * 61.23625 * 12 11 10 14 14 H 1.09003 * 109.49789 * 58.58717 * 13 12 11 15 15 C 1.50699 * 109.52654 * 178.66809 * 13 12 11 16 16 H 1.08010 * 119.99776 * 359.85974 * 15 13 12 17 17 C 1.37871 * 120.00300 * 179.85411 * 15 13 12 18 18 N 1.31519 * 120.00075 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99998 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47011 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46785 * 120.00274 * 19 17 15 22 22 H 1.48501 * 109.47113 * 240.00452 * 19 17 15 23 23 C 1.46928 * 120.62883 * 175.14157 * 9 7 6 24 24 C 1.50693 * 127.23951 * 180.36876 * 5 4 3 25 25 S 1.81920 * 108.21930 * 342.65005 * 24 5 4 26 26 C 1.81803 * 101.78028 * 44.89976 * 25 24 5 27 27 C 1.50557 * 125.08554 * 179.51430 * 4 3 2 28 28 H 1.09000 * 109.47206 * 275.16744 * 1 2 3 29 29 H 1.08994 * 109.47658 * 35.16916 * 1 2 3 30 30 H 1.09001 * 109.46930 * 155.17064 * 1 2 3 31 31 H 1.09006 * 109.58774 * 353.42249 * 10 9 7 32 32 H 1.08997 * 109.58637 * 113.84811 * 10 9 7 33 33 H 1.08996 * 109.56760 * 185.55398 * 11 10 9 34 34 H 1.09002 * 109.35845 * 65.49642 * 11 10 9 35 35 H 1.09001 * 109.45691 * 301.21916 * 12 11 10 36 36 H 1.09000 * 109.46309 * 181.26172 * 12 11 10 37 37 H 0.96997 * 119.99648 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.58295 * 246.15102 * 23 9 7 39 39 H 1.08998 * 109.58706 * 6.57923 * 23 9 7 40 40 H 1.08999 * 109.71769 * 102.33324 * 24 5 4 41 41 H 1.09006 * 109.71604 * 222.97022 * 24 5 4 42 42 H 1.08998 * 109.53312 * 174.30301 * 26 25 24 43 43 H 1.08999 * 109.59432 * 54.11191 * 26 25 24 44 44 H 1.09006 * 109.20199 * 280.76292 * 27 4 3 45 45 H 1.08997 * 109.20375 * 40.05645 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2051 1.0492 0.0000 4 6 3.4792 0.7282 -0.0064 5 6 3.5560 -0.6608 -0.0023 6 6 2.2530 -1.1169 0.0037 7 6 1.8044 -2.5184 0.0070 8 8 1.7868 -3.1537 -1.0301 9 7 1.4183 -3.0998 1.1600 10 6 1.5452 -2.3855 2.4376 11 6 2.3274 -3.2564 3.4191 12 6 1.6554 -4.6270 3.5289 13 6 1.6631 -5.3119 2.1603 14 1 2.6904 -5.4160 1.8113 15 6 1.0306 -6.6749 2.2756 16 1 0.6619 -7.0201 3.2303 17 6 0.9226 -7.4813 1.1625 18 7 1.3720 -7.0611 0.0000 19 14 0.1393 -9.1711 1.3056 20 1 -0.2811 -9.4043 2.7106 21 1 -1.0473 -9.2435 0.4158 22 1 1.1232 -10.2084 0.9042 23 6 0.8682 -4.4622 1.1639 24 6 4.8041 -1.5051 0.0009 25 16 6.1997 -0.4592 -0.5166 26 6 5.9127 1.0502 0.4552 27 6 4.6194 1.7114 -0.0187 28 1 -0.3633 0.0926 1.0235 29 1 -0.3634 0.8400 -0.5919 30 1 -0.3633 -0.9327 -0.4315 31 1 2.0768 -1.4469 2.2803 32 1 0.5540 -2.1828 2.8430 33 1 2.3424 -2.7791 4.3989 34 1 3.3485 -3.3798 3.0582 35 1 0.6265 -4.5010 3.8661 36 1 2.1995 -5.2419 4.2458 37 1 1.2957 -7.6283 -0.7831 38 1 -0.1794 -4.4323 1.4633 39 1 0.9532 -4.8934 0.1665 40 1 4.9853 -1.8898 1.0045 41 1 4.6884 -2.3351 -0.6962 42 1 6.7465 1.7381 0.3148 43 1 5.8254 0.7941 1.5111 44 1 4.7589 2.0858 -1.0329 45 1 4.3805 2.5456 0.6409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880660968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:23 Heat of formation + Delta-G solvation = 37.832567 kcal Electronic energy + Delta-G solvation = -27914.506734 eV Core-core repulsion = 24252.446414 eV Total energy + Delta-G solvation = -3662.060320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.66272 -39.34825 -36.83060 -35.51256 -33.53680 -32.47995 -32.02015 -31.62100 -29.93429 -28.34902 -26.50984 -25.22826 -24.97148 -23.46364 -22.10948 -21.89340 -20.24798 -19.62838 -18.46731 -17.35659 -16.71739 -16.33259 -16.15236 -15.70918 -15.25917 -14.81882 -14.57972 -14.43397 -14.07951 -13.87289 -13.81913 -13.75624 -13.23053 -13.01537 -12.91595 -12.85153 -12.73995 -12.70709 -12.25795 -11.97090 -11.94398 -11.55067 -11.10001 -11.00979 -10.60595 -10.54652 -10.48340 -10.33592 -10.07646 -10.01085 -9.71390 -9.24507 -9.04497 -8.90959 -8.68578 -8.52282 -7.96081 -7.74110 -6.07015 -4.16191 1.60938 1.71583 2.20244 2.34063 2.55658 2.98530 3.25584 3.34561 3.37106 3.50350 4.21703 4.36985 4.52989 4.68863 4.73033 4.91687 4.94131 5.01779 5.18354 5.22708 5.23428 5.23553 5.29726 5.37818 5.38794 5.52813 5.56430 5.69637 5.77415 5.85290 5.87770 6.06192 6.19983 6.40373 6.49037 6.52815 6.66961 6.74345 6.86090 6.98240 7.07442 7.52024 7.75661 7.87062 8.00344 8.02743 8.28193 8.54235 8.88148 9.50240 10.98287 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016283 B = 0.003581 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.157290 B = 7816.226438 C = 8232.559883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.271 5.271 3 N -0.286 5.286 4 C 0.035 3.965 5 C -0.168 4.168 6 C 0.008 3.992 7 C 0.575 3.425 8 O -0.512 6.512 9 N -0.590 5.590 10 C 0.110 3.890 11 C -0.132 4.132 12 C -0.110 4.110 13 C 0.040 3.960 14 H 0.031 0.969 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.880 5.880 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.111 3.889 24 C -0.004 4.004 25 S -0.247 6.247 26 C -0.081 4.081 27 C -0.029 4.029 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.264 0.736 38 H 0.047 0.953 39 H 0.125 0.875 40 H 0.096 0.904 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.989 17.852 3.545 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.058 5.058 3 N -0.118 5.118 4 C -0.123 4.123 5 C -0.180 4.180 6 C -0.123 4.123 7 C 0.358 3.642 8 O -0.386 6.386 9 N -0.323 5.323 10 C -0.013 4.013 11 C -0.170 4.170 12 C -0.148 4.148 13 C 0.021 3.979 14 H 0.049 0.951 15 C -0.560 4.560 16 H 0.078 0.922 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.008 4.008 24 C -0.153 4.153 25 S -0.019 6.019 26 C -0.230 4.230 27 C -0.069 4.069 28 H 0.105 0.895 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.143 0.857 40 H 0.114 0.886 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.912 18.094 2.060 18.442 hybrid contribution -1.041 -1.341 0.918 1.930 sum 1.871 16.752 2.978 17.118 Atomic orbital electron populations 1.22187 0.72883 1.05526 1.04557 1.45456 1.07320 1.01809 1.51232 1.73151 1.03079 1.13415 1.22113 1.21553 0.91996 0.92450 1.06281 1.19897 0.92683 0.93513 1.11915 1.21555 0.90977 0.89769 1.09985 1.17077 0.78759 0.83655 0.84739 1.90891 1.52604 1.63344 1.31764 1.48552 1.60715 1.18085 1.04915 1.21548 1.00069 0.94878 0.84831 1.21855 0.99849 0.97694 0.97647 1.21636 0.99048 0.93634 1.00502 1.18973 0.96802 0.93091 0.89032 0.95107 1.21096 1.40285 0.99495 0.95109 0.92230 1.25054 0.95201 0.98277 0.95444 1.69883 1.45367 1.36962 0.99524 0.86535 0.79100 0.84276 0.78110 1.19771 1.20966 1.20930 1.22446 0.95371 0.76273 1.06755 1.21679 0.90195 0.97947 1.05483 1.86922 1.37291 1.15850 1.61837 1.23318 1.00450 0.97326 1.01903 1.19838 0.88614 0.95204 1.03288 0.89515 0.88414 0.88607 0.91529 0.91981 0.92043 0.92018 0.93123 0.92769 0.92599 0.93467 0.85700 0.88572 0.86517 0.86890 0.89412 0.89223 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.93 11.22 59.84 0.67 1.61 16 2 N -0.27 -3.89 3.75 -63.96 -0.24 -4.13 16 3 N -0.29 -4.11 11.91 33.57 0.40 -3.71 16 4 C 0.04 0.49 6.90 -82.53 -0.57 -0.08 16 5 C -0.17 -2.61 5.96 -104.37 -0.62 -3.24 16 6 C 0.01 0.14 4.67 -82.15 -0.38 -0.25 16 7 C 0.58 11.32 6.70 -12.64 -0.08 11.23 16 8 O -0.51 -12.32 16.52 5.25 0.09 -12.24 16 9 N -0.59 -11.17 2.98 -174.40 -0.52 -11.69 16 10 C 0.11 1.68 6.29 -3.93 -0.02 1.65 16 11 C -0.13 -2.05 6.06 -26.83 -0.16 -2.21 16 12 C -0.11 -2.08 5.11 -26.69 -0.14 -2.22 16 13 C 0.04 0.94 2.25 -91.65 -0.21 0.74 16 14 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 15 C -0.52 -13.57 8.56 -34.44 -0.30 -13.87 16 16 H 0.06 1.53 7.75 -52.48 -0.41 1.12 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 18 N -0.88 -24.88 11.39 55.43 0.63 -24.25 16 19 Si 0.89 20.68 29.54 -169.99 -5.02 15.65 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.11 2.52 5.41 -3.71 -0.02 2.50 16 24 C 0.00 -0.06 6.60 36.00 0.24 0.18 16 25 S -0.25 -3.16 22.27 -107.50 -2.39 -5.55 16 26 C -0.08 -0.75 6.44 37.05 0.24 -0.51 16 27 C -0.03 -0.29 6.07 -28.06 -0.17 -0.46 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 1.07 7.66 -51.93 -0.40 0.67 16 31 H 0.07 0.95 6.38 -51.93 -0.33 0.62 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.13 3.36 5.11 -51.93 -0.27 3.09 16 40 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.12 1.95 8.14 -51.93 -0.42 1.52 16 42 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 370.57 15.07 5.58 5.58 Total: -1.00 -31.41 370.57 -9.97 -41.38 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.88 Total: 2.29 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.62 Total: -3.33 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.27 Total: -43.78 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.39 Total: -5.55 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.41 -9.97 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880660968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.215 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds