Wall clock time and date at job start Tue Mar 31 2020 19:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99754 * 2 1 4 4 C 1.53002 * 109.46793 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.67913 * 293.50194 * 4 3 2 6 6 C 1.53298 * 109.68128 * 54.02225 * 4 3 2 7 7 O 1.42960 * 109.22339 * 172.06021 * 6 4 3 8 8 C 1.42961 * 114.16700 * 297.42020 * 7 6 4 9 9 C 1.53296 * 109.22353 * 62.58066 * 8 7 6 10 10 N 1.47151 * 109.70838 * 172.96502 * 4 3 2 11 11 C 1.34768 * 120.98812 * 9.74463 * 10 4 3 12 12 O 1.21283 * 119.99942 * 5.40987 * 11 10 4 13 13 C 1.50705 * 120.00506 * 185.41117 * 11 10 4 14 14 C 1.50697 * 109.47262 * 180.02562 * 13 11 10 15 15 C 1.38302 * 119.92711 * 269.72403 * 14 13 11 16 16 C 1.38098 * 120.06807 * 179.72659 * 15 14 13 17 17 C 1.38879 * 119.92743 * 0.52358 * 16 15 14 18 18 O 1.35760 * 120.06658 * 179.72868 * 17 16 15 19 19 C 1.34827 * 116.99579 * 185.41879 * 18 17 16 20 20 H 1.08000 * 120.00563 * 354.95330 * 19 18 17 21 21 C 1.38659 * 119.99987 * 174.96212 * 19 18 17 22 22 N 1.31569 * 119.99490 * 359.97438 * 21 19 18 23 23 Si 1.86790 * 120.00521 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46906 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47678 * 119.99665 * 23 21 19 26 26 H 1.48505 * 109.47165 * 240.00133 * 23 21 19 27 27 C 1.38878 * 119.86670 * 359.75035 * 17 16 15 28 28 C 1.38094 * 119.92691 * 359.97438 * 27 17 16 29 29 H 1.09000 * 109.47273 * 300.00266 * 1 2 3 30 30 H 1.09002 * 109.46862 * 60.00344 * 1 2 3 31 31 H 1.09004 * 109.47010 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47529 * 59.99996 * 3 2 1 33 33 H 1.08998 * 109.47391 * 299.99655 * 3 2 1 34 34 H 1.09002 * 109.51470 * 52.13681 * 6 4 3 35 35 H 1.09005 * 109.50879 * 291.98495 * 6 4 3 36 36 H 1.09001 * 109.51305 * 182.50321 * 8 7 6 37 37 H 1.08997 * 109.50964 * 302.65016 * 8 7 6 38 38 H 1.08998 * 109.68327 * 67.42418 * 9 8 7 39 39 H 1.09005 * 109.67719 * 187.97558 * 9 8 7 40 40 H 1.09007 * 109.46360 * 300.00002 * 13 11 10 41 41 H 1.08996 * 109.46724 * 59.99938 * 13 11 10 42 42 H 1.08004 * 119.96763 * 359.97438 * 15 14 13 43 43 H 1.08000 * 120.03855 * 180.27490 * 16 15 14 44 44 H 0.97003 * 119.99407 * 179.97438 * 22 21 19 45 45 H 1.07993 * 120.03590 * 179.97438 * 27 17 16 46 46 H 1.08003 * 119.96811 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8686 0.7479 0.9420 6 6 3.9836 0.2983 -1.1671 7 8 5.4089 0.3409 -1.2703 8 6 5.9362 1.6377 -1.5606 9 6 5.5880 2.5926 -0.4130 10 7 4.1388 2.5160 -0.1690 11 6 3.3866 3.6323 -0.1025 12 8 2.2137 3.5562 0.1967 13 6 4.0028 4.9751 -0.3998 14 6 2.9572 6.0506 -0.2554 15 6 2.1948 6.4229 -1.3477 16 6 1.2320 7.4042 -1.2173 17 6 1.0371 8.0250 0.0096 18 8 0.0951 8.9940 0.1396 19 6 0.0340 9.6330 1.3252 20 1 0.6597 9.3118 2.1448 21 6 -0.8324 10.7026 1.4924 22 7 -1.5945 11.0941 0.4939 23 14 -0.9177 11.5876 3.1352 24 1 0.0325 10.9576 4.0867 25 1 -0.5571 13.0159 2.9474 26 1 -2.2969 11.4924 3.6777 27 6 1.8081 7.6530 1.1031 28 6 2.7654 6.6671 0.9677 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 3.5405 0.6646 -2.0932 35 1 3.6619 -0.7279 -0.9895 36 1 7.0192 1.5750 -1.6662 37 1 5.5001 2.0087 -2.4881 38 1 6.1279 2.2975 0.4867 39 1 5.8607 3.6115 -0.6879 40 1 4.8170 5.1640 0.2999 41 1 4.3907 4.9792 -1.4184 42 1 2.3499 5.9428 -2.3026 43 1 0.6339 7.6914 -2.0695 44 1 -2.2008 11.8422 0.6110 45 1 1.6592 8.1343 2.0584 46 1 3.3657 6.3775 1.8176 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886870887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:14 Heat of formation + Delta-G solvation = -104.654406 kcal Electronic energy + Delta-G solvation = -29036.451524 eV Core-core repulsion = 24893.166883 eV Total energy + Delta-G solvation = -4143.284641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.91293 -39.12824 -38.39705 -37.78352 -36.52120 -34.96275 -33.01933 -32.32401 -31.14491 -30.16313 -28.83782 -27.09775 -26.54327 -25.68566 -25.07392 -23.11645 -22.38182 -21.98355 -20.62586 -19.22032 -17.98893 -17.55929 -17.01784 -16.91232 -16.74413 -15.90703 -15.75537 -15.47211 -15.32665 -15.15343 -14.63954 -14.57305 -14.45831 -14.15034 -13.84385 -13.69394 -13.50294 -13.33114 -12.85454 -12.71759 -12.52748 -12.15808 -11.92816 -11.85184 -11.69313 -11.55957 -11.50208 -11.26061 -11.17710 -10.85061 -10.75163 -10.61629 -10.52811 -10.42336 -9.80429 -9.32988 -9.27746 -8.82474 -8.75286 -8.16315 -7.17468 -6.45196 -4.03714 2.18116 2.24166 2.55971 2.61130 3.12212 3.13540 3.19205 3.41422 3.74790 3.96650 4.30385 4.39374 4.58437 4.65303 4.71842 4.77696 4.89924 4.98082 5.08002 5.10702 5.18831 5.24162 5.26433 5.29114 5.30390 5.33859 5.41480 5.48184 5.55726 5.60270 5.70371 5.74624 5.80113 5.83687 6.18502 6.21258 6.40657 6.68650 6.72747 6.89740 6.98497 7.05058 7.17201 7.23501 7.35850 7.44496 7.82737 8.00225 8.11901 9.00650 9.71056 10.72977 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017572 B = 0.002478 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.055499 B =11295.128810 C =12087.617132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.408 6.408 3 C 0.069 3.931 4 C 0.117 3.883 5 H 0.085 0.915 6 C 0.059 3.941 7 O -0.380 6.380 8 C 0.044 3.956 9 C 0.075 3.925 10 N -0.622 5.622 11 C 0.514 3.486 12 O -0.513 6.513 13 C -0.078 4.078 14 C -0.172 4.172 15 C -0.059 4.059 16 C -0.192 4.192 17 C 0.158 3.842 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.232 4.232 28 C -0.055 4.055 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.269 0.731 45 H 0.127 0.873 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.352 -19.206 -2.869 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.327 6.327 3 C -0.007 4.007 4 C 0.014 3.986 5 H 0.102 0.898 6 C -0.019 4.019 7 O -0.298 6.298 8 C -0.033 4.033 9 C -0.048 4.048 10 N -0.360 5.360 11 C 0.303 3.697 12 O -0.387 6.387 13 C -0.118 4.118 14 C -0.173 4.173 15 C -0.077 4.077 16 C -0.211 4.211 17 C 0.104 3.896 18 O -0.081 6.081 19 C -0.467 4.467 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.498 5.498 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.251 4.251 28 C -0.074 4.074 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.134 0.866 44 H 0.079 0.921 45 H 0.144 0.856 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.559 -19.277 -2.872 23.742 hybrid contribution -0.327 0.912 0.861 1.296 sum 13.231 -18.365 -2.011 22.724 Atomic orbital electron populations 1.22655 0.80370 1.02230 1.00473 1.87684 1.20226 1.29092 1.95702 1.23080 0.90705 0.83074 1.03805 1.21764 0.93489 0.83360 1.00022 0.89751 1.22996 0.80668 1.01471 0.96753 1.87978 1.20983 1.28948 1.91913 1.23012 1.00118 0.83748 0.96462 1.22468 0.80606 1.01941 0.99797 1.48345 1.08525 1.05359 1.73791 1.21186 0.86772 0.85521 0.76176 1.90729 1.16465 1.85651 1.45889 1.20451 0.98214 0.89978 1.03128 1.18606 1.02465 1.01370 0.94897 1.20377 0.94619 0.95747 0.97005 1.20148 1.03044 1.01817 0.96075 1.19386 0.87969 0.89170 0.93101 1.83979 1.45432 1.42380 1.36337 1.21381 1.24665 1.12651 0.88003 0.89019 1.25297 0.95613 0.96244 0.99414 1.70058 1.22657 1.26137 1.30933 0.85645 0.78571 0.79108 0.80087 1.19098 1.20129 1.20146 1.21103 1.01210 1.03090 0.99738 1.20496 0.96586 0.94828 0.95451 0.93871 0.94064 0.89818 0.89836 0.92181 0.92656 0.86906 0.87508 0.92440 0.90284 0.88161 0.88943 0.88936 0.87496 0.86562 0.92081 0.85578 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 11.01 101.05 1.11 1.51 16 2 O -0.41 -4.91 9.97 -35.23 -0.35 -5.26 16 3 C 0.07 0.89 3.88 37.16 0.14 1.03 16 4 C 0.12 1.28 3.47 -67.42 -0.23 1.05 16 5 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 6 C 0.06 0.57 5.94 37.31 0.22 0.79 16 7 O -0.38 -3.63 10.74 -35.23 -0.38 -4.01 16 8 C 0.04 0.30 6.98 37.31 0.26 0.56 16 9 C 0.07 0.52 6.55 -3.53 -0.02 0.50 16 10 N -0.62 -6.56 3.02 -164.74 -0.50 -7.06 16 11 C 0.51 6.84 7.48 -10.99 -0.08 6.76 16 12 O -0.51 -8.83 11.80 5.55 0.07 -8.77 16 13 C -0.08 -0.93 4.20 -29.03 -0.12 -1.05 16 14 C -0.17 -2.90 4.38 -104.58 -0.46 -3.36 16 15 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 16 C -0.19 -4.13 9.99 -39.40 -0.39 -4.52 16 17 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 18 O -0.18 -5.15 9.76 0.03 0.00 -5.15 16 19 C -0.39 -11.04 9.49 30.89 0.29 -10.75 16 20 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -25.49 13.67 55.48 0.76 -24.74 16 23 Si 0.94 20.68 29.55 -169.99 -5.02 15.65 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 27 C -0.23 -5.15 9.17 -39.40 -0.36 -5.51 16 28 C -0.06 -1.03 9.69 -39.61 -0.38 -1.41 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.26 6.49 -51.93 -0.34 0.92 16 33 H 0.06 0.86 7.11 -51.93 -0.37 0.49 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.11 1.04 7.84 -51.93 -0.41 0.63 16 36 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.51 6.04 -51.93 -0.31 0.20 16 40 H 0.09 0.89 7.75 -51.93 -0.40 0.49 16 41 H 0.09 0.88 7.82 -51.93 -0.41 0.47 16 42 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 43 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 44 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 46 H 0.10 1.65 8.06 -52.48 -0.42 1.22 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -33.97 375.38 -7.12 -41.09 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.59 Total: 3.85 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -0.77 Total: -11.27 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.26 Total: -31.79 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.66 Total: -23.19 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.97 -7.12 -41.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886870887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.566 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds