Wall clock time and date at job start Tue Mar 31 2020 19:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99754 * 2 1 4 4 C 1.53002 * 109.46793 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.67913 * 293.50194 * 4 3 2 6 6 C 1.53298 * 109.68128 * 54.02225 * 4 3 2 7 7 O 1.42960 * 109.22339 * 172.06021 * 6 4 3 8 8 C 1.42961 * 114.16700 * 297.42020 * 7 6 4 9 9 C 1.53296 * 109.22353 * 62.58066 * 8 7 6 10 10 N 1.47151 * 109.70838 * 172.96502 * 4 3 2 11 11 C 1.34768 * 120.98812 * 9.74463 * 10 4 3 12 12 O 1.21283 * 119.99942 * 5.40987 * 11 10 4 13 13 C 1.50705 * 120.00506 * 185.41117 * 11 10 4 14 14 C 1.50697 * 109.47262 * 180.02562 * 13 11 10 15 15 C 1.38302 * 119.92711 * 269.72403 * 14 13 11 16 16 C 1.38098 * 120.06807 * 179.72659 * 15 14 13 17 17 C 1.38879 * 119.92743 * 0.52358 * 16 15 14 18 18 O 1.35760 * 120.06658 * 179.72868 * 17 16 15 19 19 C 1.34827 * 116.99579 * 185.41879 * 18 17 16 20 20 H 1.08000 * 120.00563 * 354.95330 * 19 18 17 21 21 C 1.38659 * 119.99987 * 174.96212 * 19 18 17 22 22 N 1.31569 * 119.99490 * 359.97438 * 21 19 18 23 23 Si 1.86790 * 120.00521 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46906 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47678 * 119.99665 * 23 21 19 26 26 H 1.48505 * 109.47165 * 240.00133 * 23 21 19 27 27 C 1.38878 * 119.86670 * 359.75035 * 17 16 15 28 28 C 1.38094 * 119.92691 * 359.97438 * 27 17 16 29 29 H 1.09000 * 109.47273 * 300.00266 * 1 2 3 30 30 H 1.09002 * 109.46862 * 60.00344 * 1 2 3 31 31 H 1.09004 * 109.47010 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47529 * 59.99996 * 3 2 1 33 33 H 1.08998 * 109.47391 * 299.99655 * 3 2 1 34 34 H 1.09002 * 109.51470 * 52.13681 * 6 4 3 35 35 H 1.09005 * 109.50879 * 291.98495 * 6 4 3 36 36 H 1.09001 * 109.51305 * 182.50321 * 8 7 6 37 37 H 1.08997 * 109.50964 * 302.65016 * 8 7 6 38 38 H 1.08998 * 109.68327 * 67.42418 * 9 8 7 39 39 H 1.09005 * 109.67719 * 187.97558 * 9 8 7 40 40 H 1.09007 * 109.46360 * 300.00002 * 13 11 10 41 41 H 1.08996 * 109.46724 * 59.99938 * 13 11 10 42 42 H 1.08004 * 119.96763 * 359.97438 * 15 14 13 43 43 H 1.08000 * 120.03855 * 180.27490 * 16 15 14 44 44 H 0.97003 * 119.99407 * 179.97438 * 22 21 19 45 45 H 1.07993 * 120.03590 * 179.97438 * 27 17 16 46 46 H 1.08003 * 119.96811 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8686 0.7479 0.9420 6 6 3.9836 0.2983 -1.1671 7 8 5.4089 0.3409 -1.2703 8 6 5.9362 1.6377 -1.5606 9 6 5.5880 2.5926 -0.4130 10 7 4.1388 2.5160 -0.1690 11 6 3.3866 3.6323 -0.1025 12 8 2.2137 3.5562 0.1967 13 6 4.0028 4.9751 -0.3998 14 6 2.9572 6.0506 -0.2554 15 6 2.1948 6.4229 -1.3477 16 6 1.2320 7.4042 -1.2173 17 6 1.0371 8.0250 0.0096 18 8 0.0951 8.9940 0.1396 19 6 0.0340 9.6330 1.3252 20 1 0.6597 9.3118 2.1448 21 6 -0.8324 10.7026 1.4924 22 7 -1.5945 11.0941 0.4939 23 14 -0.9177 11.5876 3.1352 24 1 0.0325 10.9576 4.0867 25 1 -0.5571 13.0159 2.9474 26 1 -2.2969 11.4924 3.6777 27 6 1.8081 7.6530 1.1031 28 6 2.7654 6.6671 0.9677 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 3.5405 0.6646 -2.0932 35 1 3.6619 -0.7279 -0.9895 36 1 7.0192 1.5750 -1.6662 37 1 5.5001 2.0087 -2.4881 38 1 6.1279 2.2975 0.4867 39 1 5.8607 3.6115 -0.6879 40 1 4.8170 5.1640 0.2999 41 1 4.3907 4.9792 -1.4184 42 1 2.3499 5.9428 -2.3026 43 1 0.6339 7.6914 -2.0695 44 1 -2.2008 11.8422 0.6110 45 1 1.6592 8.1343 2.0584 46 1 3.3657 6.3775 1.8176 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886870887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:13 Heat of formation + Delta-G solvation = -128.679611 kcal Electronic energy + Delta-G solvation = -29037.493335 eV Core-core repulsion = 24893.166883 eV Total energy + Delta-G solvation = -4144.326452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.83128 -40.73744 -39.43575 -38.70999 -38.15560 -35.83020 -34.45698 -33.77089 -32.39148 -31.78471 -29.68612 -28.25626 -27.68502 -27.00267 -26.44185 -23.83015 -23.64574 -23.39957 -22.05160 -20.17239 -19.84815 -18.85192 -18.42110 -17.83596 -17.55012 -16.82171 -16.71936 -16.42715 -16.32809 -16.23442 -16.13098 -15.91049 -15.65619 -15.50624 -15.12424 -15.11128 -14.68865 -14.48969 -14.38750 -14.06363 -13.62197 -13.58575 -13.01738 -12.94333 -12.81825 -12.64886 -12.56495 -12.38101 -12.28668 -12.27844 -12.21048 -12.09873 -11.87490 -11.25494 -11.18782 -10.82693 -10.75648 -10.29222 -9.77404 -9.58214 -8.90924 -8.48681 -6.16771 0.60622 0.65122 1.33322 1.41422 1.51930 1.58304 1.71235 2.16489 2.69001 2.80502 2.95043 3.15769 3.50903 3.58537 3.68481 3.88931 3.93298 3.99956 4.03508 4.10330 4.17441 4.27066 4.29451 4.38825 4.45234 4.47271 4.50723 4.57882 4.64786 4.65365 4.76354 4.78064 4.78931 4.81235 4.89072 4.97848 5.07520 5.13657 5.29114 5.36516 5.55867 5.71039 5.76354 6.02022 6.04897 6.11009 6.19867 6.33536 6.96120 7.15239 7.77544 8.75055 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017572 B = 0.002478 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.055499 B =11295.128810 C =12087.617132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.412 6.412 3 C 0.081 3.919 4 C 0.117 3.883 5 H 0.085 0.915 6 C 0.068 3.932 7 O -0.393 6.393 8 C 0.039 3.961 9 C 0.069 3.931 10 N -0.615 5.615 11 C 0.512 3.488 12 O -0.564 6.564 13 C -0.076 4.076 14 C -0.144 4.144 15 C -0.056 4.056 16 C -0.207 4.207 17 C 0.113 3.887 18 O -0.234 6.234 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.252 1.252 25 H -0.266 1.266 26 H -0.269 1.269 27 C -0.244 4.244 28 C -0.058 4.058 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.109 0.891 32 H 0.056 0.944 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.114 0.886 36 H 0.136 0.864 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.146 0.854 43 H 0.111 0.889 44 H 0.273 0.727 45 H 0.116 0.884 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.169 -21.282 -2.602 28.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.331 6.331 3 C 0.005 3.995 4 C 0.014 3.986 5 H 0.103 0.897 6 C -0.009 4.009 7 O -0.311 6.311 8 C -0.038 4.038 9 C -0.052 4.052 10 N -0.351 5.351 11 C 0.302 3.698 12 O -0.442 6.442 13 C -0.115 4.115 14 C -0.145 4.145 15 C -0.074 4.074 16 C -0.226 4.226 17 C 0.063 3.937 18 O -0.141 6.141 19 C -0.489 4.489 20 H 0.117 0.883 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.839 3.161 24 H -0.175 1.175 25 H -0.191 1.191 26 H -0.194 1.194 27 C -0.263 4.263 28 C -0.076 4.076 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.127 0.873 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.132 0.868 36 H 0.153 0.847 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.163 0.837 43 H 0.129 0.871 44 H 0.082 0.918 45 H 0.134 0.866 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 17.465 -21.419 -2.625 27.761 hybrid contribution -1.264 1.215 0.643 1.868 sum 16.200 -20.204 -1.981 25.973 Atomic orbital electron populations 1.22825 0.79511 1.03829 1.00092 1.87680 1.21235 1.28624 1.95599 1.22809 0.92226 0.82918 1.01575 1.21752 0.92074 0.83999 1.00797 0.89662 1.22844 0.81143 1.01115 0.95813 1.87971 1.20393 1.30825 1.91948 1.23276 1.01716 0.82422 0.96382 1.22825 0.78008 1.03809 1.00594 1.48366 1.10004 1.04383 1.72384 1.21336 0.86234 0.86499 0.75709 1.90754 1.18643 1.86437 1.48392 1.20584 0.97144 0.87038 1.06708 1.19204 1.01519 1.00460 0.93342 1.20847 0.93008 0.94212 0.99312 1.20432 1.04263 1.02814 0.95076 1.19939 0.88919 0.89644 0.95174 1.83939 1.48336 1.44817 1.37019 1.21855 1.25279 1.13308 0.88467 0.88251 1.26611 0.94863 0.96810 1.03840 1.70201 1.24463 1.27552 1.33809 0.84520 0.79014 0.77792 0.74800 1.17518 1.19055 1.19412 1.21216 1.02140 1.04297 0.98677 1.20913 0.95680 0.93500 0.97537 0.94518 0.94214 0.87254 0.92548 0.93972 0.92951 0.86823 0.84675 0.92085 0.89099 0.85330 0.85219 0.85012 0.83665 0.87118 0.91829 0.86634 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.91 16 2 O -0.41 -9.70 9.97 -148.98 -1.49 -11.19 16 3 C 0.08 2.06 3.88 71.98 0.28 2.34 16 4 C 0.12 2.34 3.47 44.97 0.16 2.50 16 5 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 6 C 0.07 1.17 5.94 72.08 0.43 1.60 16 7 O -0.39 -6.18 10.74 -148.98 -1.60 -7.79 16 8 C 0.04 0.34 6.98 72.08 0.50 0.84 16 9 C 0.07 0.60 6.55 86.35 0.57 1.16 16 10 N -0.61 -10.75 3.02 -793.51 -2.40 -13.14 16 11 C 0.51 11.85 7.48 87.66 0.66 12.51 16 12 O -0.56 -18.69 11.80 -3.04 -0.04 -18.73 16 13 C -0.08 -1.39 4.20 29.10 0.12 -1.26 16 14 C -0.14 -4.38 4.38 -19.83 -0.09 -4.47 16 15 C -0.06 -1.90 9.69 22.25 0.22 -1.68 16 16 C -0.21 -9.14 9.99 22.39 0.22 -8.91 16 17 C 0.11 5.87 6.65 22.58 0.15 6.02 16 18 O -0.23 -14.59 9.76 -22.82 -0.22 -14.81 16 19 C -0.41 -24.75 9.49 67.92 0.64 -24.11 16 20 H 0.10 5.50 5.20 -2.91 -0.02 5.49 16 21 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 22 N -0.92 -57.72 13.67 21.62 0.30 -57.42 16 23 Si 1.02 43.76 29.55 68.60 2.03 45.79 16 24 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 C -0.24 -11.06 9.17 22.39 0.21 -10.85 16 28 C -0.06 -2.05 9.69 22.25 0.22 -1.83 16 29 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.74 6.49 -2.39 -0.02 1.73 16 33 H 0.04 1.21 7.11 -2.39 -0.02 1.19 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 1.89 7.84 -2.38 -0.02 1.88 16 36 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.13 0.41 6.04 -2.38 -0.01 0.39 16 40 H 0.13 1.56 7.75 -2.38 -0.02 1.54 16 41 H 0.13 1.52 7.82 -2.39 -0.02 1.51 16 42 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 43 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 44 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 45 H 0.12 5.35 5.64 -2.91 -0.02 5.34 16 46 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -82.31 375.38 3.57 -78.75 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.99 Total: 23.71 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 5.99 Total: -25.17 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: -2.10 Total: -70.57 kcal Atomic # 8 Polarization: -49.16 SS G_CDS: -3.34 Total: -52.51 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -82.31 3.57 -78.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886870887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.934 kcal (2) G-P(sol) polarization free energy of solvation -82.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds