Wall clock time and date at job start Tue Mar 31 2020 19:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00151 * 2 1 4 4 C 1.53002 * 109.47448 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.67963 * 175.79027 * 4 3 2 6 6 C 1.53296 * 109.68092 * 55.22909 * 4 3 2 7 7 O 1.42965 * 109.22047 * 187.97544 * 6 4 3 8 8 C 1.42960 * 114.16613 * 62.58522 * 7 6 4 9 9 C 1.53304 * 109.22257 * 297.41958 * 8 7 6 10 10 N 1.47145 * 108.38486 * 52.29944 * 9 8 7 11 11 C 1.34778 * 120.98246 * 129.49138 * 10 9 8 12 12 O 1.21279 * 120.00373 * 184.98320 * 11 10 9 13 13 C 1.50694 * 119.99915 * 4.97663 * 11 10 9 14 14 C 1.50703 * 109.47391 * 180.02562 * 13 11 10 15 15 C 1.38304 * 119.92826 * 269.73084 * 14 13 11 16 16 C 1.38103 * 120.06490 * 179.72336 * 15 14 13 17 17 C 1.38878 * 119.92964 * 0.56892 * 16 15 14 18 18 O 1.35746 * 120.06658 * 179.68317 * 17 16 15 19 19 C 1.34824 * 117.00111 * 185.32492 * 18 17 16 20 20 H 1.07999 * 120.00187 * 354.96877 * 19 18 17 21 21 C 1.38656 * 120.00357 * 174.97032 * 19 18 17 22 22 N 1.31554 * 119.99689 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00226 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47071 * 59.99557 * 23 21 19 25 25 H 1.48499 * 109.47280 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.46973 * 299.99766 * 23 21 19 27 27 C 1.38881 * 119.86290 * 359.70447 * 17 16 15 28 28 C 1.38101 * 119.93028 * 0.02562 * 27 17 16 29 29 H 1.09001 * 109.47329 * 300.00059 * 1 2 3 30 30 H 1.09000 * 109.47363 * 59.99874 * 1 2 3 31 31 H 1.09004 * 109.47334 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47165 * 300.00284 * 3 2 1 33 33 H 1.08998 * 109.47321 * 59.99429 * 3 2 1 34 34 H 1.08994 * 109.51280 * 307.90401 * 6 4 3 35 35 H 1.09004 * 109.50875 * 68.05626 * 6 4 3 36 36 H 1.08996 * 109.51811 * 177.49579 * 8 7 6 37 37 H 1.09004 * 109.55647 * 57.36272 * 8 7 6 38 38 H 1.09003 * 109.67901 * 292.58077 * 9 8 7 39 39 H 1.08999 * 109.71391 * 172.04506 * 9 8 7 40 40 H 1.09000 * 109.47307 * 300.00611 * 13 11 10 41 41 H 1.09003 * 109.46951 * 60.00412 * 13 11 10 42 42 H 1.08002 * 119.96725 * 359.97422 * 15 14 13 43 43 H 1.07999 * 120.03301 * 180.27305 * 16 15 14 44 44 H 0.97005 * 119.99966 * 179.97438 * 22 21 19 45 45 H 1.07996 * 120.03041 * 179.97438 * 27 17 16 46 46 H 1.07996 * 119.96482 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9821 2.1761 -0.0760 6 6 3.9847 0.3235 -1.1867 7 8 5.3858 0.0623 -1.0746 8 6 5.7508 -0.6835 0.0891 9 6 5.3920 0.1260 1.3405 10 7 3.9815 0.5332 1.2412 11 6 3.1235 0.3164 2.2577 12 8 1.9464 0.5761 2.1237 13 6 3.6267 -0.2490 3.5608 14 6 2.4760 -0.3942 4.5231 15 6 2.1513 0.6477 5.3727 16 6 1.0938 0.5197 6.2517 17 6 0.3637 -0.6611 6.2901 18 8 -0.6722 -0.7922 7.1575 19 6 -1.2678 -2.0000 7.2215 20 1 -0.9704 -2.7855 6.5425 21 6 -2.2623 -2.2339 8.1591 22 7 -2.6242 -1.2774 8.9865 23 14 -3.0870 -3.9077 8.2482 24 1 -2.0673 -4.9470 8.5398 25 1 -4.1085 -3.8994 9.3259 26 1 -3.7413 -4.2069 6.9490 27 6 0.6959 -1.7075 5.4397 28 6 1.7510 -1.5713 4.5590 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6885 1.8464 -0.8900 33 1 1.6885 1.8464 0.8899 34 1 3.4369 -0.6187 -1.1805 35 1 3.7866 0.8546 -2.1178 36 1 6.8234 -0.8770 0.0759 37 1 5.2102 -1.6299 0.1004 38 1 6.0261 1.0106 1.3998 39 1 5.5350 -0.4884 2.2294 40 1 4.0771 -1.2256 3.3834 41 1 4.3725 0.4235 3.9847 42 1 2.7227 1.5638 5.3459 43 1 0.8379 1.3353 6.9118 44 1 -3.3202 -1.4409 9.6421 45 1 0.1303 -2.6271 5.4676 46 1 2.0096 -2.3846 3.8972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886870888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:19 Heat of formation + Delta-G solvation = -97.405112 kcal Electronic energy + Delta-G solvation = -29616.685533 eV Core-core repulsion = 25473.715246 eV Total energy + Delta-G solvation = -4142.970288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.78972 -39.05802 -38.29204 -37.39080 -36.38727 -34.80695 -32.88480 -32.29286 -31.07545 -30.10764 -28.70528 -26.90150 -26.48356 -25.53470 -25.05033 -23.10990 -22.23749 -21.92017 -20.53311 -19.07082 -17.94143 -17.43531 -16.97514 -16.72028 -16.64347 -15.87610 -15.57793 -15.49075 -15.09213 -14.90621 -14.65524 -14.51410 -14.19280 -14.08658 -13.73470 -13.48336 -13.40811 -13.22470 -12.69461 -12.65430 -12.41770 -12.20797 -11.92416 -11.74310 -11.69492 -11.45117 -11.22505 -11.14754 -10.97124 -10.78219 -10.69589 -10.60507 -10.41274 -10.39318 -9.60300 -9.29326 -8.98971 -8.78311 -8.47856 -8.10667 -7.11884 -6.41728 -4.00330 2.27676 2.29926 2.77574 2.87131 3.15040 3.16221 3.18719 3.48991 3.88053 3.99481 4.41167 4.46319 4.63049 4.73319 4.77425 4.89897 5.01515 5.04116 5.14268 5.18923 5.26757 5.27575 5.33761 5.36070 5.40637 5.47939 5.49708 5.61739 5.69578 5.75580 5.78678 5.85615 5.89152 5.95320 6.25550 6.38283 6.46220 6.74365 6.77442 6.95674 7.09045 7.27310 7.30685 7.38180 7.42031 7.49055 7.88212 8.03630 8.38060 9.03984 9.75130 10.76437 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019313 B = 0.002656 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.455886 B =10540.885404 C =11013.276963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.375 6.375 3 C 0.064 3.936 4 C 0.118 3.882 5 H 0.088 0.912 6 C 0.053 3.947 7 O -0.383 6.383 8 C 0.047 3.953 9 C 0.075 3.925 10 N -0.621 5.621 11 C 0.517 3.483 12 O -0.495 6.495 13 C -0.079 4.079 14 C -0.167 4.167 15 C -0.060 4.060 16 C -0.192 4.192 17 C 0.157 3.843 18 O -0.179 6.179 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.864 5.864 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.232 4.232 28 C -0.054 4.054 29 H 0.048 0.952 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.035 0.965 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.270 0.730 45 H 0.125 0.875 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.990 2.867 -18.277 24.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.294 6.294 3 C -0.012 4.012 4 C 0.015 3.985 5 H 0.106 0.894 6 C -0.025 4.025 7 O -0.301 6.301 8 C -0.031 4.031 9 C -0.048 4.048 10 N -0.359 5.359 11 C 0.306 3.694 12 O -0.368 6.368 13 C -0.118 4.118 14 C -0.168 4.168 15 C -0.078 4.078 16 C -0.211 4.211 17 C 0.103 3.897 18 O -0.082 6.082 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.499 5.499 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.251 4.251 28 C -0.072 4.072 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.125 0.875 43 H 0.133 0.867 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 15.268 3.087 -18.102 23.882 hybrid contribution -0.708 -0.744 0.145 1.037 sum 14.561 2.343 -17.957 23.237 Atomic orbital electron populations 1.22533 0.81112 1.02086 0.99453 1.87786 1.19608 1.26739 1.95221 1.22692 0.90524 0.87214 1.00815 1.21965 0.94822 0.96646 0.85089 0.89442 1.23014 0.81681 1.00204 0.97566 1.87936 1.23998 1.74960 1.43201 1.22978 1.01294 0.94039 0.84785 1.22399 0.82422 1.00176 0.99833 1.48170 1.09889 1.62078 1.15781 1.20913 0.85950 0.77941 0.84623 1.90663 1.16226 1.49006 1.80925 1.20450 0.97952 1.01712 0.91727 1.18617 1.00753 0.96120 1.01330 1.20378 0.96029 0.96724 0.94695 1.20140 0.98891 0.97637 1.04472 1.19375 0.87477 0.93307 0.89529 1.83973 1.38217 1.33907 1.52130 1.21273 1.18413 0.88046 1.19010 0.89173 1.25275 0.96741 0.99481 0.95007 1.70032 1.28923 1.32345 1.18634 0.85796 0.78934 0.80380 0.78408 1.19509 1.20298 1.19527 1.21092 1.01891 1.00849 1.01309 1.20484 0.94340 0.95995 0.96409 0.93383 0.95374 0.90443 0.94667 0.89273 0.91285 0.88177 0.87765 0.92437 0.90707 0.88496 0.89364 0.89262 0.87532 0.86653 0.92021 0.85694 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.69 101.05 1.08 1.67 16 2 O -0.37 -5.32 7.73 -59.60 -0.46 -5.78 16 3 C 0.06 0.77 4.70 37.16 0.17 0.95 16 4 C 0.12 1.22 3.48 -67.42 -0.23 0.99 16 5 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 6 C 0.05 0.50 6.21 37.31 0.23 0.73 16 7 O -0.38 -3.71 10.74 -35.23 -0.38 -4.09 16 8 C 0.05 0.35 6.99 37.31 0.26 0.61 16 9 C 0.08 0.57 6.52 -3.53 -0.02 0.54 16 10 N -0.62 -6.76 3.01 -164.75 -0.50 -7.25 16 11 C 0.52 7.14 7.39 -10.99 -0.08 7.06 16 12 O -0.50 -8.54 10.15 -18.81 -0.19 -8.73 16 13 C -0.08 -1.00 4.28 -29.04 -0.12 -1.12 16 14 C -0.17 -2.90 4.38 -104.57 -0.46 -3.35 16 15 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 16 C -0.19 -4.20 9.99 -39.39 -0.39 -4.60 16 17 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 18 O -0.18 -5.22 9.76 0.08 0.00 -5.22 16 19 C -0.39 -11.15 9.49 30.89 0.29 -10.85 16 20 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.71 13.67 55.48 0.76 -24.95 16 23 Si 0.94 20.82 29.55 -169.99 -5.02 15.79 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 27 C -0.23 -5.22 9.17 -39.39 -0.36 -5.59 16 28 C -0.05 -1.03 9.69 -39.61 -0.38 -1.41 16 29 H 0.05 0.72 7.93 -51.93 -0.41 0.31 16 30 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.04 0.35 8.14 -51.92 -0.42 -0.07 16 33 H 0.09 1.28 5.95 -52.04 -0.31 0.98 16 34 H 0.07 0.76 7.34 -51.93 -0.38 0.38 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.59 6.07 -51.93 -0.32 0.27 16 40 H 0.09 0.94 7.40 -51.93 -0.38 0.56 16 41 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 42 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 46 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 371.97 15.07 5.61 5.61 Total: -1.00 -34.24 371.97 -7.52 -41.76 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.58 Total: 4.10 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -0.76 Total: -11.23 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.26 Total: -32.20 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -1.03 Total: -23.82 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.24 -7.52 -41.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886870888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.642 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds