Wall clock time and date at job start Tue Mar 31 2020 19:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00151 * 2 1 4 4 C 1.53002 * 109.47448 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.67963 * 175.79027 * 4 3 2 6 6 C 1.53296 * 109.68092 * 55.22909 * 4 3 2 7 7 O 1.42965 * 109.22047 * 187.97544 * 6 4 3 8 8 C 1.42960 * 114.16613 * 62.58522 * 7 6 4 9 9 C 1.53304 * 109.22257 * 297.41958 * 8 7 6 10 10 N 1.47145 * 108.38486 * 52.29944 * 9 8 7 11 11 C 1.34778 * 120.98246 * 129.49138 * 10 9 8 12 12 O 1.21279 * 120.00373 * 184.98320 * 11 10 9 13 13 C 1.50694 * 119.99915 * 4.97663 * 11 10 9 14 14 C 1.50703 * 109.47391 * 180.02562 * 13 11 10 15 15 C 1.38304 * 119.92826 * 269.73084 * 14 13 11 16 16 C 1.38103 * 120.06490 * 179.72336 * 15 14 13 17 17 C 1.38878 * 119.92964 * 0.56892 * 16 15 14 18 18 O 1.35746 * 120.06658 * 179.68317 * 17 16 15 19 19 C 1.34824 * 117.00111 * 185.32492 * 18 17 16 20 20 H 1.07999 * 120.00187 * 354.96877 * 19 18 17 21 21 C 1.38656 * 120.00357 * 174.97032 * 19 18 17 22 22 N 1.31554 * 119.99689 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00226 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47071 * 59.99557 * 23 21 19 25 25 H 1.48499 * 109.47280 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.46973 * 299.99766 * 23 21 19 27 27 C 1.38881 * 119.86290 * 359.70447 * 17 16 15 28 28 C 1.38101 * 119.93028 * 0.02562 * 27 17 16 29 29 H 1.09001 * 109.47329 * 300.00059 * 1 2 3 30 30 H 1.09000 * 109.47363 * 59.99874 * 1 2 3 31 31 H 1.09004 * 109.47334 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47165 * 300.00284 * 3 2 1 33 33 H 1.08998 * 109.47321 * 59.99429 * 3 2 1 34 34 H 1.08994 * 109.51280 * 307.90401 * 6 4 3 35 35 H 1.09004 * 109.50875 * 68.05626 * 6 4 3 36 36 H 1.08996 * 109.51811 * 177.49579 * 8 7 6 37 37 H 1.09004 * 109.55647 * 57.36272 * 8 7 6 38 38 H 1.09003 * 109.67901 * 292.58077 * 9 8 7 39 39 H 1.08999 * 109.71391 * 172.04506 * 9 8 7 40 40 H 1.09000 * 109.47307 * 300.00611 * 13 11 10 41 41 H 1.09003 * 109.46951 * 60.00412 * 13 11 10 42 42 H 1.08002 * 119.96725 * 359.97422 * 15 14 13 43 43 H 1.07999 * 120.03301 * 180.27305 * 16 15 14 44 44 H 0.97005 * 119.99966 * 179.97438 * 22 21 19 45 45 H 1.07996 * 120.03041 * 179.97438 * 27 17 16 46 46 H 1.07996 * 119.96482 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9821 2.1761 -0.0760 6 6 3.9847 0.3235 -1.1867 7 8 5.3858 0.0623 -1.0746 8 6 5.7508 -0.6835 0.0891 9 6 5.3920 0.1260 1.3405 10 7 3.9815 0.5332 1.2412 11 6 3.1235 0.3164 2.2577 12 8 1.9464 0.5761 2.1237 13 6 3.6267 -0.2490 3.5608 14 6 2.4760 -0.3942 4.5231 15 6 2.1513 0.6477 5.3727 16 6 1.0938 0.5197 6.2517 17 6 0.3637 -0.6611 6.2901 18 8 -0.6722 -0.7922 7.1575 19 6 -1.2678 -2.0000 7.2215 20 1 -0.9704 -2.7855 6.5425 21 6 -2.2623 -2.2339 8.1591 22 7 -2.6242 -1.2774 8.9865 23 14 -3.0870 -3.9077 8.2482 24 1 -2.0673 -4.9470 8.5398 25 1 -4.1085 -3.8994 9.3259 26 1 -3.7413 -4.2069 6.9490 27 6 0.6959 -1.7075 5.4397 28 6 1.7510 -1.5713 4.5590 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6885 1.8464 -0.8900 33 1 1.6885 1.8464 0.8899 34 1 3.4369 -0.6187 -1.1805 35 1 3.7866 0.8546 -2.1178 36 1 6.8234 -0.8770 0.0759 37 1 5.2102 -1.6299 0.1004 38 1 6.0261 1.0106 1.3998 39 1 5.5350 -0.4884 2.2294 40 1 4.0771 -1.2256 3.3834 41 1 4.3725 0.4235 3.9847 42 1 2.7227 1.5638 5.3459 43 1 0.8379 1.3353 6.9118 44 1 -3.3202 -1.4409 9.6421 45 1 0.1303 -2.6271 5.4676 46 1 2.0096 -2.3846 3.8972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886870888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:17 Heat of formation + Delta-G solvation = -120.375590 kcal Electronic energy + Delta-G solvation = -29617.681608 eV Core-core repulsion = 25473.715246 eV Total energy + Delta-G solvation = -4143.966362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70626 -40.71722 -39.30169 -38.50968 -37.95087 -35.67756 -34.42356 -33.65746 -32.37190 -31.76850 -29.58651 -28.13034 -27.68930 -26.92487 -26.40309 -23.82317 -23.63150 -23.28207 -21.95761 -20.05727 -19.81134 -18.81977 -18.31022 -17.68879 -17.45389 -16.82498 -16.49214 -16.34925 -16.30721 -16.20675 -16.05147 -15.91715 -15.49656 -15.46490 -15.18245 -14.91424 -14.57403 -14.38366 -14.28888 -13.91711 -13.59351 -13.48109 -13.07941 -12.95108 -12.81612 -12.56107 -12.43695 -12.38494 -12.28850 -12.19101 -12.12772 -12.00812 -11.73146 -11.18151 -11.14468 -10.80197 -10.61574 -9.97231 -9.75649 -9.34755 -8.87913 -8.47516 -6.15727 0.62168 0.68544 1.33267 1.44196 1.49906 1.80321 1.97077 2.17426 2.82580 2.85754 2.97741 3.16721 3.52323 3.70580 3.76732 3.90058 4.02335 4.04699 4.13449 4.19236 4.24638 4.31550 4.35425 4.38618 4.48232 4.55749 4.57506 4.60711 4.65203 4.69322 4.79979 4.83732 4.88664 4.89470 4.91379 5.03680 5.09456 5.14409 5.30810 5.54430 5.59522 5.72173 5.79584 6.02741 6.13107 6.22594 6.33540 6.49605 6.96982 7.39728 7.78702 8.75815 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019313 B = 0.002656 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.455886 B =10540.885404 C =11013.276963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.390 6.390 3 C 0.064 3.936 4 C 0.117 3.883 5 H 0.106 0.894 6 C 0.061 3.939 7 O -0.393 6.393 8 C 0.043 3.957 9 C 0.070 3.930 10 N -0.617 5.617 11 C 0.512 3.488 12 O -0.540 6.540 13 C -0.077 4.077 14 C -0.139 4.139 15 C -0.056 4.056 16 C -0.206 4.206 17 C 0.113 3.887 18 O -0.234 6.234 19 C -0.415 4.415 20 H 0.099 0.901 21 C -0.023 4.023 22 N -0.922 5.922 23 Si 1.018 2.982 24 H -0.256 1.256 25 H -0.270 1.270 26 H -0.259 1.259 27 C -0.243 4.243 28 C -0.057 4.057 29 H 0.020 0.980 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.117 0.883 36 H 0.132 0.868 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.145 0.855 43 H 0.111 0.889 44 H 0.273 0.727 45 H 0.115 0.885 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.473 2.230 -20.778 28.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.308 6.308 3 C -0.012 4.012 4 C 0.014 3.986 5 H 0.123 0.877 6 C -0.017 4.017 7 O -0.312 6.312 8 C -0.034 4.034 9 C -0.052 4.052 10 N -0.354 5.354 11 C 0.302 3.698 12 O -0.417 6.417 13 C -0.116 4.116 14 C -0.140 4.140 15 C -0.074 4.074 16 C -0.225 4.225 17 C 0.063 3.937 18 O -0.141 6.141 19 C -0.491 4.491 20 H 0.116 0.884 21 C -0.220 4.220 22 N -0.560 5.560 23 Si 0.837 3.163 24 H -0.180 1.180 25 H -0.194 1.194 26 H -0.184 1.184 27 C -0.262 4.262 28 C -0.075 4.075 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.135 0.865 36 H 0.150 0.850 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.163 0.837 43 H 0.129 0.871 44 H 0.082 0.918 45 H 0.133 0.867 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 18.845 2.459 -20.659 28.071 hybrid contribution -1.458 -0.398 0.666 1.652 sum 17.387 2.061 -19.994 26.576 Atomic orbital electron populations 1.22495 0.81114 1.02098 0.99190 1.87749 1.19768 1.28085 1.95242 1.22701 0.91798 0.86271 1.00455 1.22076 0.93588 0.97723 0.85250 0.87673 1.22929 0.81608 0.99261 0.97894 1.87933 1.23688 1.75226 1.44329 1.23180 1.02877 0.93365 0.84026 1.22703 0.80376 1.01350 1.00727 1.48194 1.10996 1.61058 1.15105 1.21004 0.85666 0.77726 0.85426 1.90699 1.18092 1.51096 1.81810 1.20556 0.96456 1.04501 0.90135 1.19188 1.00446 0.94308 1.00058 1.20827 0.94744 0.98513 0.93303 1.20421 0.99889 0.96704 1.05504 1.19911 0.88060 0.95346 0.90369 1.83933 1.40742 1.34628 1.54781 1.21770 1.19074 0.88511 1.19731 0.88355 1.26597 0.97125 1.04100 0.94207 1.70182 1.30464 1.35167 1.20216 0.84660 0.77959 0.74744 0.78910 1.17972 1.19439 1.18355 1.21190 1.03113 0.99968 1.01930 1.20850 0.93188 0.97817 0.95691 0.96148 0.93065 0.90351 0.92715 0.91927 0.93177 0.86527 0.84995 0.93222 0.88902 0.86429 0.86264 0.85626 0.83733 0.87126 0.91822 0.86718 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.25 10.69 113.37 1.21 2.46 16 2 O -0.39 -10.69 7.73 -125.68 -0.97 -11.66 16 3 C 0.06 1.46 4.70 71.98 0.34 1.79 16 4 C 0.12 2.08 3.48 44.97 0.16 2.24 16 5 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 6 C 0.06 0.98 6.21 72.08 0.45 1.43 16 7 O -0.39 -6.24 10.74 -148.98 -1.60 -7.84 16 8 C 0.04 0.46 6.99 72.08 0.50 0.96 16 9 C 0.07 0.71 6.52 86.36 0.56 1.27 16 10 N -0.62 -11.12 3.01 -793.52 -2.39 -13.50 16 11 C 0.51 12.46 7.39 87.65 0.65 13.11 16 12 O -0.54 -17.89 10.15 20.27 0.21 -17.68 16 13 C -0.08 -1.58 4.28 29.10 0.12 -1.45 16 14 C -0.14 -4.42 4.38 -19.83 -0.09 -4.51 16 15 C -0.06 -1.96 9.69 22.25 0.22 -1.74 16 16 C -0.21 -9.27 9.99 22.39 0.22 -9.04 16 17 C 0.11 5.94 6.65 22.58 0.15 6.09 16 18 O -0.23 -14.69 9.76 -22.64 -0.22 -14.91 16 19 C -0.41 -25.07 9.49 67.92 0.64 -24.43 16 20 H 0.10 5.49 5.20 -2.91 -0.02 5.47 16 21 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 22 N -0.92 -58.05 13.67 21.61 0.30 -57.75 16 23 Si 1.02 44.01 29.55 68.60 2.03 46.04 16 24 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 26 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 27 C -0.24 -11.23 9.17 22.39 0.21 -11.02 16 28 C -0.06 -2.10 9.69 22.25 0.22 -1.89 16 29 H 0.02 0.62 7.93 -2.39 -0.02 0.61 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 32 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.06 1.78 5.95 -4.09 -0.02 1.76 16 34 H 0.05 1.01 7.34 -2.39 -0.02 0.99 16 35 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.12 0.70 6.07 -2.39 -0.01 0.69 16 40 H 0.12 1.81 7.40 -2.39 -0.02 1.79 16 41 H 0.13 1.77 8.08 -2.39 -0.02 1.75 16 42 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 43 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 44 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 45 H 0.12 5.41 5.64 -2.91 -0.02 5.40 16 46 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -82.14 371.97 4.35 -77.78 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.98 Total: 25.17 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 6.03 Total: -25.63 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -2.09 Total: -71.26 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -2.59 Total: -52.11 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -82.14 4.35 -77.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886870888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.593 kcal (2) G-P(sol) polarization free energy of solvation -82.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds