Wall clock time and date at job start Tue Mar 31 2020 18:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28398 * 125.21075 * 2 1 4 4 C 1.31402 * 111.08985 * 180.02562 * 3 2 1 5 5 C 1.39086 * 107.31523 * 359.66408 * 4 3 2 6 6 C 1.36741 * 125.20948 * 180.02562 * 2 1 3 7 7 C 1.47026 * 127.05700 * 0.03812 * 6 2 1 8 8 O 1.21669 * 119.99503 * 264.11114 * 7 6 2 9 9 N 1.34775 * 120.00071 * 84.10665 * 7 6 2 10 10 C 1.36838 * 119.99898 * 184.48237 * 9 7 6 11 11 H 1.07995 * 120.00084 * 63.63612 * 10 9 7 12 12 C 1.39058 * 119.99967 * 243.63418 * 10 9 7 13 13 N 1.31364 * 120.00004 * 352.14034 * 12 10 9 14 14 Si 1.86795 * 119.99844 * 172.14089 * 12 10 9 15 15 H 1.48502 * 109.47139 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47259 * 120.00097 * 14 12 10 17 17 H 1.48505 * 109.46893 * 239.99984 * 14 12 10 18 18 C 1.46500 * 120.00153 * 4.48787 * 9 7 6 19 19 C 1.55235 * 110.58119 * 181.56064 * 18 9 7 20 20 C 1.54891 * 102.58686 * 203.33836 * 19 18 9 21 21 C 1.54261 * 104.31487 * 37.92882 * 20 19 18 22 22 C 1.53870 * 106.60081 * 336.32653 * 21 20 19 23 23 C 1.50689 * 127.24891 * 180.02562 * 5 4 3 24 24 S 1.81926 * 108.28001 * 343.11266 * 23 5 4 25 25 C 1.81800 * 101.77838 * 44.69324 * 24 23 5 26 26 C 1.50565 * 125.07782 * 179.74623 * 4 3 2 27 27 H 1.08999 * 109.47544 * 274.68107 * 1 2 3 28 28 H 1.09001 * 109.47356 * 34.68769 * 1 2 3 29 29 H 1.09009 * 109.47211 * 154.68305 * 1 2 3 30 30 H 0.97000 * 119.99724 * 180.02562 * 13 12 10 31 31 H 1.09007 * 110.43448 * 304.14803 * 18 9 7 32 32 H 1.09004 * 110.89406 * 85.05166 * 19 18 9 33 33 H 1.08997 * 110.76633 * 321.56733 * 19 18 9 34 34 H 1.09007 * 110.48259 * 279.18559 * 20 19 18 35 35 H 1.08997 * 110.48857 * 156.68251 * 20 19 18 36 36 H 1.09003 * 110.02904 * 95.60908 * 21 20 19 37 37 H 1.08995 * 110.03696 * 216.98726 * 21 20 19 38 38 H 1.09000 * 110.03258 * 119.27941 * 22 21 20 39 39 H 1.09001 * 110.03437 * 240.65969 * 22 21 20 40 40 H 1.08996 * 109.84902 * 223.31812 * 23 5 4 41 41 H 1.09003 * 109.55932 * 102.73813 * 23 5 4 42 42 H 1.09003 * 109.53244 * 174.32371 * 25 24 23 43 43 H 1.08997 * 109.60052 * 54.12915 * 25 24 23 44 44 H 1.09001 * 109.19897 * 280.75952 * 26 4 3 45 45 H 1.09001 * 109.19976 * 40.05595 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0491 0.0000 4 6 3.4796 0.7285 -0.0005 5 6 3.5571 -0.6602 0.0069 6 6 2.2534 -1.1172 -0.0005 7 6 1.8056 -2.5176 -0.0019 8 8 1.7227 -3.1308 1.0457 9 7 1.4868 -3.1220 -1.1636 10 6 0.9830 -4.3943 -1.1572 11 1 0.0319 -4.5961 -0.6871 12 6 1.6957 -5.4273 -1.7560 13 7 2.7724 -5.1607 -2.4598 14 14 1.1221 -7.1941 -1.5595 15 1 -0.1063 -7.2259 -0.7257 16 1 0.8289 -7.7710 -2.8960 17 1 2.1882 -7.9902 -0.8998 18 6 1.6797 -2.4170 -2.4332 19 6 1.2076 -3.2958 -3.6226 20 6 2.0084 -2.7114 -4.8127 21 6 3.3907 -2.3773 -4.2150 22 6 3.1818 -2.1901 -2.7020 23 6 4.8056 -1.5040 0.0097 24 16 6.2033 -0.4568 -0.4996 25 6 5.9108 1.0512 0.4727 26 6 4.6194 1.7123 -0.0062 27 1 -0.3634 0.0839 1.0242 28 1 -0.3634 0.8450 -0.5848 29 1 -0.3634 -0.9290 -0.4395 30 1 3.2693 -5.8813 -2.8777 31 1 1.1457 -1.4667 -2.4258 32 1 0.1357 -3.1847 -3.7866 33 1 1.4681 -4.3413 -3.4580 34 1 1.5274 -1.8087 -5.1896 35 1 2.1051 -3.4511 -5.6074 36 1 4.0846 -3.1979 -4.3973 37 1 3.7759 -1.4580 -4.6560 38 1 3.7742 -2.9198 -2.1502 39 1 3.4661 -1.1797 -2.4080 40 1 4.6936 -2.3330 -0.6890 41 1 4.9825 -1.8906 1.0134 42 1 6.7448 1.7398 0.3370 43 1 5.8187 0.7938 1.5278 44 1 4.7637 2.0879 -1.0192 45 1 4.3768 2.5456 0.6533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889085073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:25 Heat of formation + Delta-G solvation = 55.833750 kcal Electronic energy + Delta-G solvation = -29111.809653 eV Core-core repulsion = 25450.529923 eV Total energy + Delta-G solvation = -3661.279730 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.22534 -38.83545 -36.69979 -35.17517 -33.76010 -32.32504 -31.90517 -31.24074 -28.00735 -27.65442 -26.78781 -26.18980 -24.98813 -23.16981 -22.02579 -19.96252 -19.74853 -19.51055 -18.74052 -16.99770 -16.77044 -16.20431 -16.00908 -15.18614 -15.07004 -14.69777 -14.58543 -14.12993 -13.93611 -13.71427 -13.51766 -13.33074 -13.07981 -12.79936 -12.60801 -12.46625 -12.36719 -12.30296 -11.86068 -11.65044 -11.29007 -11.21759 -10.98417 -10.87039 -10.39017 -10.31721 -10.30356 -10.17265 -10.02167 -9.82829 -9.79860 -9.50642 -8.87788 -8.49597 -8.26866 -8.21591 -7.47281 -7.32831 -6.42416 -4.36988 1.94370 2.17190 2.61062 2.71326 2.92632 3.12617 3.22636 3.25952 3.67962 4.05355 4.50369 4.63857 4.87480 4.90798 5.00394 5.25438 5.25920 5.31268 5.37329 5.52079 5.54732 5.55305 5.61786 5.67252 5.73451 5.83431 5.90046 5.99399 6.14747 6.17913 6.30007 6.44434 6.46530 6.52591 6.60908 6.76970 6.82298 6.85175 6.99494 7.12476 7.19748 7.37074 7.44690 7.89942 8.26766 8.39977 8.42167 9.00138 9.08549 9.80748 10.57102 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.005232 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.798355 B = 5350.219497 C = 5663.756832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.277 5.277 3 N -0.298 5.298 4 C 0.032 3.968 5 C -0.174 4.174 6 C 0.031 3.969 7 C 0.538 3.462 8 O -0.552 6.552 9 N -0.423 5.423 10 C -0.315 4.315 11 H 0.082 0.918 12 C 0.053 3.947 13 N -0.845 5.845 14 Si 0.914 3.086 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.278 1.278 18 C 0.150 3.850 19 C -0.132 4.132 20 C -0.117 4.117 21 C -0.103 4.103 22 C -0.117 4.117 23 C -0.002 4.002 24 S -0.252 6.252 25 C -0.081 4.081 26 C -0.027 4.027 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.270 0.730 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.145 0.855 34 H 0.041 0.959 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.040 0.960 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.122 0.878 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 9.903 -0.861 10.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.063 5.063 3 N -0.130 5.130 4 C -0.126 4.126 5 C -0.186 4.186 6 C -0.101 4.101 7 C 0.322 3.678 8 O -0.432 6.432 9 N -0.143 5.143 10 C -0.443 4.443 11 H 0.099 0.901 12 C -0.152 4.152 13 N -0.481 5.481 14 Si 0.741 3.259 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.204 1.204 18 C 0.046 3.954 19 C -0.169 4.169 20 C -0.156 4.156 21 C -0.141 4.141 22 C -0.156 4.156 23 C -0.150 4.150 24 S -0.025 6.025 25 C -0.229 4.229 26 C -0.067 4.067 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.162 0.838 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.140 0.860 41 H 0.108 0.892 42 H 0.128 0.872 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.652 10.147 -1.184 10.348 hybrid contribution -0.755 -1.132 0.800 1.578 sum 0.897 9.015 -0.385 9.068 Atomic orbital electron populations 1.22097 0.73483 1.05142 1.04148 1.45411 1.07076 1.02161 1.51700 1.73054 1.03031 1.13838 1.23036 1.21448 0.91889 0.92525 1.06786 1.19747 0.92765 0.93137 1.12925 1.22005 0.90663 0.90255 1.07136 1.17434 0.80852 0.83280 0.86195 1.90700 1.55301 1.65414 1.31768 1.43400 1.54917 1.13720 1.02305 1.19106 1.04152 0.82464 1.38614 0.90085 1.25656 0.94950 0.99943 0.94671 1.69865 1.16205 1.32953 1.29064 0.86062 0.79243 0.82510 0.78123 1.19180 1.20638 1.20400 1.21824 0.94965 0.92800 0.85807 1.23340 0.96116 1.06523 0.90927 1.22219 0.96480 0.98691 0.98167 1.21848 0.97062 0.99371 0.95818 1.22520 0.97017 0.99929 0.96095 1.21795 0.90000 0.97893 1.05328 1.86789 1.37568 1.15920 1.62186 1.23282 1.00378 0.97461 1.01824 1.19786 0.88837 0.95195 1.02900 0.89993 0.88854 0.88662 0.91964 0.94728 0.94639 0.83809 0.94023 0.92968 0.92087 0.94110 0.89518 0.93817 0.86046 0.89232 0.87234 0.89690 0.89496 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.31 11.22 59.85 0.67 1.98 16 2 N -0.28 -5.04 3.75 -63.96 -0.24 -5.28 16 3 N -0.30 -5.31 11.91 33.57 0.40 -4.91 16 4 C 0.03 0.55 6.90 -82.53 -0.57 -0.02 16 5 C -0.17 -3.32 4.21 -104.34 -0.44 -3.76 16 6 C 0.03 0.64 4.73 -82.15 -0.39 0.25 16 7 C 0.54 12.91 6.42 -12.70 -0.08 12.83 16 8 O -0.55 -15.20 17.08 5.22 0.09 -15.11 16 9 N -0.42 -10.01 2.45 -107.12 -0.26 -10.28 16 10 C -0.32 -7.94 7.68 -15.01 -0.12 -8.06 16 11 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 12 C 0.05 1.29 4.10 -17.45 -0.07 1.21 16 13 N -0.85 -20.27 9.30 55.50 0.52 -19.75 16 14 Si 0.91 19.46 29.56 -169.99 -5.02 14.43 16 15 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 C 0.15 3.17 2.62 -66.08 -0.17 3.00 16 19 C -0.13 -2.72 5.31 -24.55 -0.13 -2.85 16 20 C -0.12 -2.12 6.82 -25.07 -0.17 -2.29 16 21 C -0.10 -1.91 6.80 -25.62 -0.17 -2.08 16 22 C -0.12 -2.40 3.92 -25.61 -0.10 -2.50 16 23 C 0.00 -0.03 6.29 36.00 0.23 0.20 16 24 S -0.25 -3.87 22.27 -107.50 -2.39 -6.26 16 25 C -0.08 -0.96 6.43 37.05 0.24 -0.73 16 26 C -0.03 -0.35 6.07 -28.06 -0.17 -0.52 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.42 7.67 -51.92 -0.40 1.02 16 30 H 0.27 6.21 8.31 -40.82 -0.34 5.88 16 31 H 0.03 0.72 7.90 -51.92 -0.41 0.31 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.14 3.31 3.43 -51.93 -0.18 3.13 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.09 2.00 5.37 -51.93 -0.28 1.72 16 39 H 0.04 0.89 6.32 -51.93 -0.33 0.56 16 40 H 0.12 2.48 5.64 -51.93 -0.29 2.18 16 41 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 42 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -28.77 357.37 -9.49 -38.26 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.51 Total: 6.85 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.45 Total: -3.35 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.41 Total: -40.22 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.09 Total: -15.11 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -2.39 Total: -6.26 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.77 -9.49 -38.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889085073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.093 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds