Wall clock time and date at job start Tue Mar 31 2020 18:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28398 * 125.21075 * 2 1 4 4 C 1.31402 * 111.08985 * 180.02562 * 3 2 1 5 5 C 1.39086 * 107.31523 * 359.66408 * 4 3 2 6 6 C 1.36741 * 125.20948 * 180.02562 * 2 1 3 7 7 C 1.47026 * 127.05700 * 0.03812 * 6 2 1 8 8 O 1.21669 * 119.99503 * 264.11114 * 7 6 2 9 9 N 1.34775 * 120.00071 * 84.10665 * 7 6 2 10 10 C 1.36838 * 119.99898 * 184.48237 * 9 7 6 11 11 H 1.07995 * 120.00084 * 63.63612 * 10 9 7 12 12 C 1.39058 * 119.99967 * 243.63418 * 10 9 7 13 13 N 1.31364 * 120.00004 * 352.14034 * 12 10 9 14 14 Si 1.86795 * 119.99844 * 172.14089 * 12 10 9 15 15 H 1.48502 * 109.47139 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47259 * 120.00097 * 14 12 10 17 17 H 1.48505 * 109.46893 * 239.99984 * 14 12 10 18 18 C 1.46500 * 120.00153 * 4.48787 * 9 7 6 19 19 C 1.55235 * 110.58119 * 181.56064 * 18 9 7 20 20 C 1.54891 * 102.58686 * 203.33836 * 19 18 9 21 21 C 1.54261 * 104.31487 * 37.92882 * 20 19 18 22 22 C 1.53870 * 106.60081 * 336.32653 * 21 20 19 23 23 C 1.50689 * 127.24891 * 180.02562 * 5 4 3 24 24 S 1.81926 * 108.28001 * 343.11266 * 23 5 4 25 25 C 1.81800 * 101.77838 * 44.69324 * 24 23 5 26 26 C 1.50565 * 125.07782 * 179.74623 * 4 3 2 27 27 H 1.08999 * 109.47544 * 274.68107 * 1 2 3 28 28 H 1.09001 * 109.47356 * 34.68769 * 1 2 3 29 29 H 1.09009 * 109.47211 * 154.68305 * 1 2 3 30 30 H 0.97000 * 119.99724 * 180.02562 * 13 12 10 31 31 H 1.09007 * 110.43448 * 304.14803 * 18 9 7 32 32 H 1.09004 * 110.89406 * 85.05166 * 19 18 9 33 33 H 1.08997 * 110.76633 * 321.56733 * 19 18 9 34 34 H 1.09007 * 110.48259 * 279.18559 * 20 19 18 35 35 H 1.08997 * 110.48857 * 156.68251 * 20 19 18 36 36 H 1.09003 * 110.02904 * 95.60908 * 21 20 19 37 37 H 1.08995 * 110.03696 * 216.98726 * 21 20 19 38 38 H 1.09000 * 110.03258 * 119.27941 * 22 21 20 39 39 H 1.09001 * 110.03437 * 240.65969 * 22 21 20 40 40 H 1.08996 * 109.84902 * 223.31812 * 23 5 4 41 41 H 1.09003 * 109.55932 * 102.73813 * 23 5 4 42 42 H 1.09003 * 109.53244 * 174.32371 * 25 24 23 43 43 H 1.08997 * 109.60052 * 54.12915 * 25 24 23 44 44 H 1.09001 * 109.19897 * 280.75952 * 26 4 3 45 45 H 1.09001 * 109.19976 * 40.05595 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0491 0.0000 4 6 3.4796 0.7285 -0.0005 5 6 3.5571 -0.6602 0.0069 6 6 2.2534 -1.1172 -0.0005 7 6 1.8056 -2.5176 -0.0019 8 8 1.7227 -3.1308 1.0457 9 7 1.4868 -3.1220 -1.1636 10 6 0.9830 -4.3943 -1.1572 11 1 0.0319 -4.5961 -0.6871 12 6 1.6957 -5.4273 -1.7560 13 7 2.7724 -5.1607 -2.4598 14 14 1.1221 -7.1941 -1.5595 15 1 -0.1063 -7.2259 -0.7257 16 1 0.8289 -7.7710 -2.8960 17 1 2.1882 -7.9902 -0.8998 18 6 1.6797 -2.4170 -2.4332 19 6 1.2076 -3.2958 -3.6226 20 6 2.0084 -2.7114 -4.8127 21 6 3.3907 -2.3773 -4.2150 22 6 3.1818 -2.1901 -2.7020 23 6 4.8056 -1.5040 0.0097 24 16 6.2033 -0.4568 -0.4996 25 6 5.9108 1.0512 0.4727 26 6 4.6194 1.7123 -0.0062 27 1 -0.3634 0.0839 1.0242 28 1 -0.3634 0.8450 -0.5848 29 1 -0.3634 -0.9290 -0.4395 30 1 3.2693 -5.8813 -2.8777 31 1 1.1457 -1.4667 -2.4258 32 1 0.1357 -3.1847 -3.7866 33 1 1.4681 -4.3413 -3.4580 34 1 1.5274 -1.8087 -5.1896 35 1 2.1051 -3.4511 -5.6074 36 1 4.0846 -3.1979 -4.3973 37 1 3.7759 -1.4580 -4.6560 38 1 3.7742 -2.9198 -2.1502 39 1 3.4661 -1.1797 -2.4080 40 1 4.6936 -2.3330 -0.6890 41 1 4.9825 -1.8906 1.0134 42 1 6.7448 1.7398 0.3370 43 1 5.8187 0.7938 1.5278 44 1 4.7637 2.0879 -1.0192 45 1 4.3768 2.5456 0.6533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889085073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:24 Heat of formation + Delta-G solvation = 40.685143 kcal Electronic energy + Delta-G solvation = -29112.466546 eV Core-core repulsion = 25450.529923 eV Total energy + Delta-G solvation = -3661.936623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.64527 -40.61392 -38.47573 -36.40010 -35.54356 -34.01430 -33.31476 -32.60461 -29.48297 -29.26656 -28.45432 -27.43110 -26.76120 -24.30051 -23.68618 -21.54746 -21.28545 -20.96801 -20.32192 -18.82036 -18.38803 -17.56403 -17.36363 -16.89972 -16.43936 -16.33933 -16.02272 -15.75246 -15.51407 -15.05652 -14.97405 -14.69214 -14.60181 -14.18063 -14.12296 -13.81094 -13.71949 -13.59648 -13.57038 -13.11793 -12.72861 -12.68405 -12.67455 -12.43711 -12.12920 -11.98604 -11.83049 -11.66578 -11.53471 -11.47033 -11.14870 -10.97648 -10.73352 -10.07008 -9.89500 -9.66456 -9.21165 -8.68832 -8.29801 -6.30981 0.61870 0.77488 1.22863 1.40937 1.44213 1.46351 1.53786 1.57487 1.95902 2.28926 2.82343 3.01223 3.33711 3.66324 3.87415 3.90367 3.95729 4.01069 4.07202 4.16452 4.21400 4.28095 4.31132 4.34124 4.42818 4.51907 4.58237 4.74870 4.83275 4.88438 4.91120 4.91215 4.95972 5.01173 5.01525 5.24010 5.29369 5.36246 5.45227 5.47890 5.61842 5.74994 5.77850 6.13290 6.35796 6.54912 7.01796 7.11319 7.22959 7.92879 8.68297 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.005232 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.798355 B = 5350.219497 C = 5663.756832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.276 5.276 3 N -0.293 5.293 4 C 0.031 3.969 5 C -0.178 4.178 6 C 0.001 3.999 7 C 0.535 3.465 8 O -0.604 6.604 9 N -0.424 5.424 10 C -0.345 4.345 11 H 0.063 0.937 12 C 0.027 3.973 13 N -0.849 5.849 14 Si 0.968 3.032 15 H -0.274 1.274 16 H -0.263 1.263 17 H -0.284 1.284 18 C 0.150 3.850 19 C -0.136 4.136 20 C -0.108 4.108 21 C -0.100 4.100 22 C -0.102 4.102 23 C -0.003 4.003 24 S -0.257 6.257 25 C -0.070 4.070 26 C -0.026 4.026 27 H 0.097 0.903 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.273 0.727 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.124 0.876 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.149 0.851 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.369 12.281 -2.057 12.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.063 5.063 3 N -0.125 5.125 4 C -0.127 4.127 5 C -0.190 4.190 6 C -0.130 4.130 7 C 0.321 3.679 8 O -0.488 6.488 9 N -0.142 5.142 10 C -0.473 4.473 11 H 0.081 0.919 12 C -0.178 4.178 13 N -0.484 5.484 14 Si 0.792 3.208 15 H -0.199 1.199 16 H -0.188 1.188 17 H -0.210 1.210 18 C 0.047 3.953 19 C -0.174 4.174 20 C -0.146 4.146 21 C -0.138 4.138 22 C -0.140 4.140 23 C -0.152 4.152 24 S -0.029 6.029 25 C -0.219 4.219 26 C -0.066 4.066 27 H 0.115 0.885 28 H 0.143 0.857 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.141 0.859 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.166 0.834 43 H 0.108 0.892 44 H 0.118 0.882 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.393 12.542 -2.428 12.998 hybrid contribution -0.974 -1.819 1.198 2.386 sum 1.419 10.723 -1.230 10.886 Atomic orbital electron populations 1.22375 0.71692 1.05779 1.05704 1.45706 1.08170 1.01362 1.51095 1.73071 1.03365 1.13279 1.22780 1.22119 0.92819 0.92290 1.05481 1.19969 0.92243 0.94372 1.12403 1.21563 0.91987 0.89339 1.10110 1.17780 0.79950 0.84641 0.85507 1.90638 1.57640 1.67150 1.33358 1.43544 1.54000 1.13496 1.03181 1.19078 1.04365 0.83915 1.39913 0.91921 1.26138 0.95073 1.02438 0.94123 1.69942 1.16231 1.33734 1.28519 0.85273 0.78210 0.78791 0.78518 1.19852 1.18802 1.21042 1.21914 0.95647 0.92821 0.84914 1.23278 0.96808 1.05323 0.91942 1.22173 0.95508 0.99751 0.97185 1.21831 0.97423 1.00161 0.94345 1.22310 0.95768 0.98756 0.97192 1.21595 0.91636 0.98019 1.03955 1.86754 1.35586 1.17519 1.63042 1.23469 1.01415 0.95775 1.01224 1.19987 0.87362 0.94760 1.04486 0.88468 0.85658 0.90102 0.91680 0.94223 0.94278 0.85922 0.91842 0.91885 0.92980 0.91848 0.92525 0.93960 0.89011 0.90298 0.83358 0.89248 0.88161 0.87084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.33 11.22 127.77 1.43 3.77 16 2 N -0.28 -9.92 3.75 -356.25 -1.34 -11.26 16 3 N -0.29 -9.89 11.91 -47.70 -0.57 -10.46 16 4 C 0.03 1.01 6.90 42.78 0.30 1.30 16 5 C -0.18 -6.82 4.21 -19.68 -0.08 -6.90 16 6 C 0.00 0.06 4.73 40.66 0.19 0.25 16 7 C 0.54 27.00 6.42 86.55 0.56 27.56 16 8 O -0.60 -35.36 17.08 -4.25 -0.07 -35.43 16 9 N -0.42 -20.92 2.45 -611.05 -1.50 -22.42 16 10 C -0.34 -18.16 7.68 84.11 0.65 -17.52 16 11 H 0.06 3.45 7.84 -2.91 -0.02 3.43 16 12 C 0.03 1.36 4.10 84.96 0.35 1.70 16 13 N -0.85 -41.63 9.30 21.68 0.20 -41.43 16 14 Si 0.97 40.75 29.56 68.60 2.03 42.77 16 15 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 16 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 18 C 0.15 6.45 2.62 46.19 0.12 6.57 16 19 C -0.14 -5.59 5.31 32.01 0.17 -5.42 16 20 C -0.11 -3.69 6.82 31.67 0.22 -3.48 16 21 C -0.10 -3.56 6.80 31.32 0.21 -3.35 16 22 C -0.10 -4.20 3.92 31.32 0.12 -4.07 16 23 C 0.00 -0.12 6.29 71.23 0.45 0.33 16 24 S -0.26 -7.52 22.27 -56.49 -1.26 -8.78 16 25 C -0.07 -1.44 6.43 71.91 0.46 -0.97 16 26 C -0.03 -0.57 6.07 29.73 0.18 -0.39 16 27 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.08 2.47 7.67 -2.38 -0.02 2.46 16 30 H 0.27 12.72 8.31 -92.71 -0.77 11.95 16 31 H 0.04 1.65 7.90 -2.38 -0.02 1.63 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.12 5.69 3.43 -2.39 -0.01 5.69 16 34 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 2.70 5.37 -2.39 -0.01 2.69 16 39 H 0.04 1.71 6.32 -2.39 -0.02 1.70 16 40 H 0.09 3.98 5.64 -2.39 -0.01 3.97 16 41 H 0.08 3.02 8.14 -2.39 -0.02 3.01 16 42 H 0.15 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -65.17 357.37 3.82 -61.34 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 1.01 Total: 26.29 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 5.32 Total: -0.63 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -3.20 Total: -85.57 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -0.07 Total: -35.43 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -1.26 Total: -8.78 kcal Total: -65.17 3.82 -61.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889085073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.029 kcal (2) G-P(sol) polarization free energy of solvation -65.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds