Wall clock time and date at job start Tue Mar 31 2020 19:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99776 * 2 1 4 4 H 1.08998 * 109.54288 * 30.17530 * 3 2 1 5 5 C 1.53177 * 109.54237 * 269.99936 * 3 2 1 6 6 C 1.53091 * 109.16529 * 183.15051 * 5 3 2 7 7 O 1.42902 * 109.41431 * 57.60965 * 6 5 3 8 8 C 1.42906 * 114.10029 * 298.84322 * 7 6 5 9 9 C 1.53100 * 109.42240 * 61.14914 * 8 7 6 10 10 H 1.08997 * 109.52263 * 62.30568 * 9 8 7 11 11 N 1.46499 * 109.52238 * 182.49583 * 9 8 7 12 12 C 1.34781 * 119.99866 * 274.99955 * 11 9 8 13 13 O 1.21282 * 119.99971 * 359.97438 * 12 11 9 14 14 C 1.50696 * 119.99994 * 180.02562 * 12 11 9 15 15 C 1.50701 * 109.46960 * 180.02562 * 14 12 11 16 16 C 1.38321 * 119.96147 * 269.72024 * 15 14 12 17 17 C 1.38287 * 120.13900 * 179.76885 * 16 15 14 18 18 C 1.38124 * 120.06439 * 0.51058 * 17 16 15 19 19 C 1.38855 * 119.92803 * 359.74345 * 18 17 16 20 20 O 1.35755 * 120.06570 * 179.97438 * 19 18 17 21 21 C 1.34830 * 117.00014 * 354.49518 * 20 19 18 22 22 H 1.08007 * 119.99796 * 5.05219 * 21 20 19 23 23 C 1.38654 * 120.00136 * 185.05680 * 21 20 19 24 24 N 1.31554 * 120.00146 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00084 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46959 * 90.00273 * 25 23 21 27 27 H 1.48502 * 109.47093 * 209.99881 * 25 23 21 28 28 H 1.48498 * 109.47144 * 329.99860 * 25 23 21 29 29 C 1.38072 * 119.96800 * 90.00051 * 15 14 12 30 30 H 1.09001 * 109.47396 * 299.99741 * 1 2 3 31 31 H 1.09000 * 109.47466 * 60.00599 * 1 2 3 32 32 H 1.09001 * 109.46971 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.52647 * 63.24615 * 5 3 2 34 34 H 1.09005 * 109.57910 * 303.09278 * 5 3 2 35 35 H 1.08998 * 109.48173 * 297.63272 * 6 5 3 36 36 H 1.09007 * 109.49286 * 177.59617 * 6 5 3 37 37 H 1.08991 * 109.48249 * 181.13531 * 8 7 6 38 38 H 1.08999 * 109.47755 * 301.16483 * 8 7 6 39 39 H 0.97001 * 119.99886 * 94.99972 * 11 9 8 40 40 H 1.09000 * 109.46899 * 299.99880 * 14 12 11 41 41 H 1.09001 * 109.47249 * 59.99612 * 14 12 11 42 42 H 1.08005 * 119.93232 * 0.02562 * 16 15 14 43 43 H 1.08001 * 119.96518 * 180.25714 * 17 16 15 44 44 H 1.07998 * 120.03625 * 179.72561 * 18 17 16 45 45 H 0.96996 * 120.00712 * 179.97438 * 24 23 21 46 46 H 1.08002 * 120.03617 * 359.95031 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3472 1.9997 0.5163 5 6 2.2185 1.7736 -1.4435 6 6 2.9129 3.1379 -1.4342 7 8 4.1523 3.0353 -0.7304 8 6 4.0159 2.6471 0.6382 9 6 3.3656 1.2630 0.7123 10 1 4.0100 0.5312 0.2252 11 7 3.1702 0.8884 2.1150 12 6 4.1740 0.3106 2.8043 13 8 5.2388 0.1005 2.2632 14 6 3.9728 -0.0752 4.2471 15 6 5.2374 -0.6965 4.7819 16 6 5.4283 -2.0634 4.6892 17 6 6.5894 -2.6367 5.1744 18 6 7.5577 -1.8468 5.7629 19 6 7.3666 -0.4751 5.8621 20 8 8.3162 0.3038 6.4404 21 6 9.3682 -0.3272 6.9999 22 1 9.4689 -1.3983 6.9038 23 6 10.3207 0.3988 7.6986 24 7 10.1982 1.7034 7.8153 25 14 11.7778 -0.4756 8.4743 26 1 12.8968 -0.5329 7.4997 27 1 12.2132 0.2663 9.6847 28 1 11.3818 -1.8552 8.8551 29 6 6.2015 0.0985 5.3691 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.2528 1.8599 -1.9416 34 1 2.8394 1.0525 -1.9753 35 1 2.2730 3.8681 -0.9387 36 1 3.1023 3.4567 -2.4592 37 1 4.9997 2.6119 1.1059 38 1 3.3905 3.3709 1.1607 39 1 2.3184 1.0562 2.5477 40 1 3.7300 0.8130 4.8303 41 1 3.1556 -0.7928 4.3208 42 1 4.6708 -2.6836 4.2332 43 1 6.7374 -3.7037 5.0968 44 1 8.4623 -2.2957 6.1457 45 1 10.8643 2.2113 8.3044 46 1 6.0502 1.1652 5.4445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889191380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:05 Heat of formation + Delta-G solvation = -128.203003 kcal Electronic energy + Delta-G solvation = -28585.329399 eV Core-core repulsion = 24441.023615 eV Total energy + Delta-G solvation = -4144.305785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.59466 -39.36852 -38.58110 -37.77999 -36.42832 -34.76846 -32.50283 -32.31159 -31.96836 -30.15164 -29.06763 -27.33237 -26.89354 -25.18854 -24.58789 -23.76550 -21.62152 -21.17389 -21.00656 -20.06222 -17.81639 -17.45827 -17.02409 -16.80590 -16.69639 -16.58141 -15.86936 -15.38458 -15.23295 -14.90645 -14.87220 -14.40272 -14.30747 -14.17519 -13.71225 -13.58713 -13.43710 -13.29359 -13.16411 -12.56349 -12.43632 -12.33123 -12.28908 -11.81662 -11.64423 -11.46728 -11.36405 -11.20855 -10.88716 -10.76273 -10.71975 -10.54744 -10.39313 -10.27435 -10.10187 -9.66235 -9.26322 -9.07916 -8.76871 -7.98767 -7.13836 -6.37431 -3.96262 2.15832 2.47278 2.78977 3.00912 3.17673 3.18327 3.19401 3.23266 3.66455 4.02888 4.18001 4.34820 4.47103 4.53235 4.63042 4.80295 4.84861 4.88494 4.95258 4.96223 5.03126 5.14801 5.18153 5.23956 5.26968 5.33097 5.35269 5.53582 5.57350 5.66233 5.72130 5.77744 5.82577 6.01437 6.25465 6.29000 6.41482 6.70453 6.73573 6.84008 6.99678 7.14874 7.34438 7.43239 7.45812 7.51862 7.90937 8.07903 8.33693 9.08499 9.79967 10.81006 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019165 B = 0.002305 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.681887 B =12146.262630 C =13139.748069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.082 3.918 4 H 0.067 0.933 5 C -0.176 4.176 6 C 0.059 3.941 7 O -0.372 6.372 8 C 0.054 3.946 9 C 0.118 3.882 10 H 0.105 0.895 11 N -0.727 5.727 12 C 0.516 3.484 13 O -0.514 6.514 14 C -0.092 4.092 15 C -0.033 4.033 16 C -0.196 4.196 17 C -0.075 4.075 18 C -0.231 4.231 19 C 0.155 3.845 20 O -0.180 6.180 21 C -0.390 4.390 22 H 0.091 0.909 23 C 0.038 3.962 24 N -0.865 5.865 25 Si 0.940 3.060 26 H -0.274 1.274 27 H -0.278 1.278 28 H -0.268 1.268 29 C -0.174 4.174 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.055 0.945 39 H 0.398 0.602 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.126 0.874 45 H 0.269 0.731 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.291 0.639 -14.746 26.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.292 6.292 3 C 0.023 3.977 4 H 0.085 0.915 5 C -0.214 4.214 6 C -0.018 4.018 7 O -0.289 6.289 8 C -0.024 4.024 9 C 0.012 3.988 10 H 0.123 0.877 11 N -0.382 5.382 12 C 0.303 3.697 13 O -0.387 6.387 14 C -0.132 4.132 15 C -0.034 4.034 16 C -0.215 4.215 17 C -0.093 4.093 18 C -0.250 4.250 19 C 0.101 3.899 20 O -0.084 6.084 21 C -0.466 4.466 22 H 0.109 0.891 23 C -0.166 4.166 24 N -0.501 5.501 25 Si 0.765 3.235 26 H -0.199 1.199 27 H -0.203 1.203 28 H -0.192 1.192 29 C -0.194 4.194 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.073 0.927 39 H 0.232 0.768 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.144 0.856 45 H 0.079 0.921 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -21.032 0.791 -15.093 25.899 hybrid contribution -0.268 -0.290 0.619 0.735 sum -21.300 0.501 -14.474 25.757 Atomic orbital electron populations 1.22826 0.80998 1.03057 0.99871 1.88029 1.19596 1.26662 1.94935 1.22441 0.94197 0.85479 0.95547 0.91531 1.22748 1.02429 0.99093 0.97161 1.22610 0.86099 0.95026 0.98067 1.88042 1.29213 1.88663 1.23026 1.23060 1.03094 0.93209 0.83051 1.21646 0.95886 0.98499 0.82734 0.87704 1.45852 1.16563 1.64310 1.11457 1.20802 0.83623 0.76548 0.88760 1.90778 1.25538 1.52121 1.70235 1.20578 0.98223 1.02369 0.92052 1.18647 0.93728 0.93302 0.97715 1.20357 0.99245 0.93875 1.07978 1.20680 0.93443 0.98350 0.96840 1.21175 1.01675 0.93881 1.08256 1.19273 0.88927 0.89894 0.91773 1.83976 1.28187 1.33378 1.62860 1.21315 0.99596 0.93224 1.32486 0.89148 1.25266 0.98770 0.95699 0.96822 1.70038 1.35064 1.05546 1.39424 0.85726 0.80244 0.78910 0.78620 1.19921 1.20322 1.19241 1.19933 0.93447 0.99148 1.06822 0.93934 0.94090 0.89387 0.90263 0.89555 0.92962 0.88164 0.87226 0.92721 0.76822 0.88260 0.88358 0.87945 0.87502 0.85638 0.92136 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.26 16 2 O -0.37 -3.42 10.28 -35.23 -0.36 -3.79 16 3 C 0.08 0.65 2.20 -26.55 -0.06 0.60 16 4 H 0.07 0.40 7.79 -51.93 -0.40 0.00 16 5 C -0.18 -1.24 5.76 -26.59 -0.15 -1.39 16 6 C 0.06 0.43 6.84 37.20 0.25 0.68 16 7 O -0.37 -4.15 10.77 -35.23 -0.38 -4.52 16 8 C 0.05 0.58 6.42 37.21 0.24 0.82 16 9 C 0.12 1.27 2.33 -67.79 -0.16 1.12 16 10 H 0.10 1.47 7.59 -51.93 -0.39 1.08 16 11 N -0.73 -7.64 5.01 -53.67 -0.27 -7.90 16 12 C 0.52 7.52 7.79 -10.99 -0.09 7.44 16 13 O -0.51 -10.12 15.70 5.56 0.09 -10.04 16 14 C -0.09 -1.23 5.83 -29.04 -0.17 -1.40 16 15 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 16 C -0.20 -3.64 9.70 -39.53 -0.38 -4.02 16 17 C -0.07 -1.48 10.04 -39.61 -0.40 -1.88 16 18 C -0.23 -5.32 9.17 -39.40 -0.36 -5.68 16 19 C 0.15 3.93 6.65 -39.11 -0.26 3.67 16 20 O -0.18 -5.34 9.76 0.03 0.00 -5.34 16 21 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 22 H 0.09 2.43 5.20 -52.48 -0.27 2.15 16 23 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 24 N -0.87 -26.01 13.67 55.48 0.76 -25.25 16 25 Si 0.94 21.11 29.55 -169.99 -5.02 16.09 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 29 C -0.17 -3.87 9.64 -39.40 -0.38 -4.25 16 30 H 0.04 0.19 8.09 -51.93 -0.42 -0.23 16 31 H 0.04 0.18 7.96 -51.93 -0.41 -0.23 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.41 7.96 -51.93 -0.41 -0.01 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.40 2.88 8.60 -40.82 -0.35 2.53 16 40 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 41 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 42 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 43 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.11 2.43 8.06 -52.49 -0.42 2.00 16 LS Contribution 384.93 15.07 5.80 5.80 Total: -1.00 -36.28 384.93 -7.21 -43.49 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.75 Total: 5.57 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -1.08 Total: -14.11 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.49 Total: -33.15 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.65 Total: -23.69 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.28 -7.21 -43.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889191380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.712 kcal (2) G-P(sol) polarization free energy of solvation -36.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds