Wall clock time and date at job start Tue Mar 31 2020 19:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99776 * 2 1 4 4 H 1.08998 * 109.54288 * 30.17530 * 3 2 1 5 5 C 1.53177 * 109.54237 * 269.99936 * 3 2 1 6 6 C 1.53091 * 109.16529 * 183.15051 * 5 3 2 7 7 O 1.42902 * 109.41431 * 57.60965 * 6 5 3 8 8 C 1.42906 * 114.10029 * 298.84322 * 7 6 5 9 9 C 1.53100 * 109.42240 * 61.14914 * 8 7 6 10 10 H 1.08997 * 109.52263 * 62.30568 * 9 8 7 11 11 N 1.46499 * 109.52238 * 182.49583 * 9 8 7 12 12 C 1.34781 * 119.99866 * 274.99955 * 11 9 8 13 13 O 1.21282 * 119.99971 * 359.97438 * 12 11 9 14 14 C 1.50696 * 119.99994 * 180.02562 * 12 11 9 15 15 C 1.50701 * 109.46960 * 180.02562 * 14 12 11 16 16 C 1.38321 * 119.96147 * 269.72024 * 15 14 12 17 17 C 1.38287 * 120.13900 * 179.76885 * 16 15 14 18 18 C 1.38124 * 120.06439 * 0.51058 * 17 16 15 19 19 C 1.38855 * 119.92803 * 359.74345 * 18 17 16 20 20 O 1.35755 * 120.06570 * 179.97438 * 19 18 17 21 21 C 1.34830 * 117.00014 * 354.49518 * 20 19 18 22 22 H 1.08007 * 119.99796 * 5.05219 * 21 20 19 23 23 C 1.38654 * 120.00136 * 185.05680 * 21 20 19 24 24 N 1.31554 * 120.00146 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00084 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46959 * 90.00273 * 25 23 21 27 27 H 1.48502 * 109.47093 * 209.99881 * 25 23 21 28 28 H 1.48498 * 109.47144 * 329.99860 * 25 23 21 29 29 C 1.38072 * 119.96800 * 90.00051 * 15 14 12 30 30 H 1.09001 * 109.47396 * 299.99741 * 1 2 3 31 31 H 1.09000 * 109.47466 * 60.00599 * 1 2 3 32 32 H 1.09001 * 109.46971 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.52647 * 63.24615 * 5 3 2 34 34 H 1.09005 * 109.57910 * 303.09278 * 5 3 2 35 35 H 1.08998 * 109.48173 * 297.63272 * 6 5 3 36 36 H 1.09007 * 109.49286 * 177.59617 * 6 5 3 37 37 H 1.08991 * 109.48249 * 181.13531 * 8 7 6 38 38 H 1.08999 * 109.47755 * 301.16483 * 8 7 6 39 39 H 0.97001 * 119.99886 * 94.99972 * 11 9 8 40 40 H 1.09000 * 109.46899 * 299.99880 * 14 12 11 41 41 H 1.09001 * 109.47249 * 59.99612 * 14 12 11 42 42 H 1.08005 * 119.93232 * 0.02562 * 16 15 14 43 43 H 1.08001 * 119.96518 * 180.25714 * 17 16 15 44 44 H 1.07998 * 120.03625 * 179.72561 * 18 17 16 45 45 H 0.96996 * 120.00712 * 179.97438 * 24 23 21 46 46 H 1.08002 * 120.03617 * 359.95031 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3472 1.9997 0.5163 5 6 2.2185 1.7736 -1.4435 6 6 2.9129 3.1379 -1.4342 7 8 4.1523 3.0353 -0.7304 8 6 4.0159 2.6471 0.6382 9 6 3.3656 1.2630 0.7123 10 1 4.0100 0.5312 0.2252 11 7 3.1702 0.8884 2.1150 12 6 4.1740 0.3106 2.8043 13 8 5.2388 0.1005 2.2632 14 6 3.9728 -0.0752 4.2471 15 6 5.2374 -0.6965 4.7819 16 6 5.4283 -2.0634 4.6892 17 6 6.5894 -2.6367 5.1744 18 6 7.5577 -1.8468 5.7629 19 6 7.3666 -0.4751 5.8621 20 8 8.3162 0.3038 6.4404 21 6 9.3682 -0.3272 6.9999 22 1 9.4689 -1.3983 6.9038 23 6 10.3207 0.3988 7.6986 24 7 10.1982 1.7034 7.8153 25 14 11.7778 -0.4756 8.4743 26 1 12.8968 -0.5329 7.4997 27 1 12.2132 0.2663 9.6847 28 1 11.3818 -1.8552 8.8551 29 6 6.2015 0.0985 5.3691 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.2528 1.8599 -1.9416 34 1 2.8394 1.0525 -1.9753 35 1 2.2730 3.8681 -0.9387 36 1 3.1023 3.4567 -2.4592 37 1 4.9997 2.6119 1.1059 38 1 3.3905 3.3709 1.1607 39 1 2.3184 1.0562 2.5477 40 1 3.7300 0.8130 4.8303 41 1 3.1556 -0.7928 4.3208 42 1 4.6708 -2.6836 4.2332 43 1 6.7374 -3.7037 5.0968 44 1 8.4623 -2.2957 6.1457 45 1 10.8643 2.2113 8.3044 46 1 6.0502 1.1652 5.4445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889191380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:04 Heat of formation + Delta-G solvation = -155.923552 kcal Electronic energy + Delta-G solvation = -28586.531452 eV Core-core repulsion = 24441.023615 eV Total energy + Delta-G solvation = -4145.507838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.51333 -40.79288 -39.97198 -38.42490 -38.17794 -35.79047 -34.34110 -33.57114 -33.01495 -31.22215 -30.70737 -28.33719 -27.75547 -27.22296 -25.23262 -24.61417 -23.26440 -22.69932 -21.82702 -21.27169 -19.51374 -18.85411 -18.33380 -17.79535 -17.59989 -17.32322 -16.80181 -16.59706 -16.52841 -16.10489 -16.00199 -15.72889 -15.59615 -15.50511 -15.18980 -14.83339 -14.56594 -14.33442 -14.20035 -14.01736 -13.87591 -13.58901 -13.08462 -12.97063 -12.86392 -12.76744 -12.46758 -12.39283 -12.29235 -12.21504 -12.10024 -11.93450 -11.59253 -11.20139 -11.04033 -11.01108 -10.79914 -10.55634 -10.03661 -9.62940 -8.97219 -8.46673 -6.15143 0.52392 0.76439 1.33925 1.43782 1.51962 1.65995 2.05685 2.18097 2.60156 2.83513 2.95120 3.18790 3.44699 3.51323 3.73454 3.78920 3.84309 3.91257 4.08478 4.11116 4.17274 4.30177 4.32806 4.40792 4.45260 4.51642 4.57477 4.59076 4.64421 4.66718 4.70145 4.74511 4.79675 4.91073 4.93591 5.07000 5.11396 5.13575 5.31485 5.37434 5.65639 5.73397 5.76107 6.03346 6.12909 6.20142 6.23950 6.54672 6.97877 7.29490 7.79557 8.76984 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019165 B = 0.002305 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.681887 B =12146.262630 C =13139.748069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.401 6.401 3 C 0.089 3.911 4 H 0.098 0.902 5 C -0.171 4.171 6 C 0.053 3.947 7 O -0.401 6.401 8 C 0.058 3.942 9 C 0.119 3.881 10 H 0.063 0.937 11 N -0.704 5.704 12 C 0.516 3.484 13 O -0.576 6.576 14 C -0.089 4.089 15 C -0.026 4.026 16 C -0.181 4.181 17 C -0.075 4.075 18 C -0.247 4.247 19 C 0.112 3.888 20 O -0.234 6.234 21 C -0.414 4.414 22 H 0.100 0.900 23 C -0.024 4.024 24 N -0.922 5.922 25 Si 1.020 2.980 26 H -0.265 1.265 27 H -0.268 1.268 28 H -0.252 1.252 29 C -0.191 4.191 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.419 0.581 40 H 0.126 0.874 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.117 0.883 45 H 0.273 0.727 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.972 -0.630 -15.544 30.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.320 6.320 3 C 0.030 3.970 4 H 0.116 0.884 5 C -0.210 4.210 6 C -0.023 4.023 7 O -0.319 6.319 8 C -0.020 4.020 9 C 0.013 3.987 10 H 0.082 0.918 11 N -0.358 5.358 12 C 0.304 3.696 13 O -0.455 6.455 14 C -0.128 4.128 15 C -0.027 4.027 16 C -0.200 4.200 17 C -0.093 4.093 18 C -0.267 4.267 19 C 0.062 3.938 20 O -0.141 6.141 21 C -0.490 4.490 22 H 0.117 0.883 23 C -0.221 4.221 24 N -0.561 5.561 25 Si 0.839 3.161 26 H -0.190 1.190 27 H -0.193 1.193 28 H -0.176 1.176 29 C -0.210 4.210 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.131 0.869 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.257 0.743 40 H 0.144 0.856 41 H 0.161 0.839 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.135 0.865 45 H 0.082 0.918 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -24.824 -0.491 -15.920 29.494 hybrid contribution 0.548 0.021 0.636 0.839 sum -24.276 -0.470 -15.284 28.691 Atomic orbital electron populations 1.23029 0.79102 1.03847 1.01380 1.87998 1.21710 1.27210 1.95125 1.22401 0.92725 0.85978 0.95870 0.88411 1.22719 1.03339 0.98265 0.96653 1.22886 0.85044 0.95776 0.98635 1.88002 1.31926 1.88782 1.23177 1.22898 1.01656 0.93990 0.83440 1.21591 0.97370 0.97200 0.82562 0.91849 1.45605 1.16503 1.62444 1.11289 1.21001 0.83308 0.76133 0.89183 1.90774 1.28077 1.55061 1.71548 1.20692 0.96550 1.04469 0.91071 1.19196 0.94617 0.93507 0.95364 1.20974 0.99300 0.94273 1.05429 1.21127 0.92794 0.99987 0.95345 1.21294 1.02620 0.93363 1.09389 1.19883 0.89650 0.91200 0.93106 1.83935 1.29693 1.35140 1.65325 1.21822 1.00188 0.93942 1.33075 0.88311 1.26609 1.01903 0.96545 0.97074 1.70185 1.36876 1.07563 1.41441 0.84579 0.75689 0.78147 0.77711 1.18991 1.19287 1.17597 1.20221 0.93664 0.99588 1.07562 0.92211 0.92746 0.89101 0.87480 0.91779 0.90524 0.86873 0.90901 0.90010 0.74327 0.85597 0.83893 0.83711 0.83816 0.86489 0.91841 0.87363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.82 113.37 1.23 1.40 16 2 O -0.40 -6.25 10.28 -148.98 -1.53 -7.78 16 3 C 0.09 1.17 2.20 30.71 0.07 1.24 16 4 H 0.10 0.70 7.79 -2.39 -0.02 0.69 16 5 C -0.17 -2.03 5.76 30.68 0.18 -1.85 16 6 C 0.05 0.65 6.84 72.01 0.49 1.14 16 7 O -0.40 -8.85 10.77 -148.98 -1.60 -10.46 16 8 C 0.06 1.25 6.42 72.02 0.46 1.72 16 9 C 0.12 2.47 2.33 45.08 0.11 2.57 16 10 H 0.06 1.87 7.59 -2.39 -0.02 1.85 16 11 N -0.70 -13.24 5.01 -442.09 -2.21 -15.45 16 12 C 0.52 14.29 7.79 87.65 0.68 14.97 16 13 O -0.58 -23.16 15.70 -3.04 -0.05 -23.20 16 14 C -0.09 -2.07 5.83 29.10 0.17 -1.91 16 15 C -0.03 -0.94 4.37 -19.88 -0.09 -1.02 16 16 C -0.18 -6.20 9.70 22.30 0.22 -5.98 16 17 C -0.07 -2.82 10.04 22.25 0.22 -2.60 16 18 C -0.25 -11.73 9.17 22.39 0.21 -11.53 16 19 C 0.11 5.99 6.65 22.58 0.15 6.14 16 20 O -0.23 -14.91 9.76 -22.79 -0.22 -15.13 16 21 C -0.41 -25.37 9.49 67.92 0.64 -24.72 16 22 H 0.10 5.59 5.20 -2.91 -0.02 5.58 16 23 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 24 N -0.92 -58.57 13.67 21.61 0.30 -58.28 16 25 Si 1.02 44.63 29.55 68.60 2.03 46.66 16 26 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 28 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 29 C -0.19 -8.76 9.64 22.39 0.22 -8.55 16 30 H 0.06 0.25 8.09 -2.39 -0.02 0.23 16 31 H 0.05 0.27 7.96 -2.39 -0.02 0.25 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.11 0.69 7.96 -2.38 -0.02 0.67 16 34 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 36 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.42 4.37 8.60 -92.71 -0.80 3.58 16 40 H 0.13 2.35 8.08 -2.39 -0.02 2.33 16 41 H 0.14 2.14 8.08 -2.39 -0.02 2.13 16 42 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 43 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 44 H 0.12 5.60 5.64 -2.91 -0.02 5.59 16 45 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 46 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -88.85 384.93 2.32 -86.53 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.20 Total: 27.06 kcal Atomic # 6 Polarization: -35.36 SS G_CDS: 5.42 Total: -29.94 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -1.92 Total: -73.73 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -3.41 Total: -56.58 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -88.85 2.32 -86.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889191380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.397 kcal (2) G-P(sol) polarization free energy of solvation -88.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds