Wall clock time and date at job start Tue Mar 31 2020 18:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21279 * 119.99993 * 2 1 4 4 N 1.34773 * 119.99671 * 180.02562 * 2 1 3 5 5 C 1.46505 * 120.00007 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.46835 * 59.99736 * 5 4 2 7 7 C 1.53001 * 109.47182 * 300.00220 * 5 4 2 8 8 C 1.52998 * 109.47219 * 179.97438 * 5 4 2 9 9 O 1.45203 * 109.47097 * 179.97438 * 8 5 4 10 10 C 1.34225 * 117.00065 * 179.97438 * 9 8 5 11 11 O 1.20830 * 120.00117 * 0.02562 * 10 9 8 12 12 C 1.50705 * 120.00089 * 180.02562 * 10 9 8 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47448 * 89.99502 * 22 20 18 24 24 H 1.48501 * 109.47175 * 209.99712 * 22 20 18 25 25 H 1.48506 * 109.47415 * 329.99678 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.08993 * 109.47055 * 240.00358 * 1 2 3 29 29 H 1.09001 * 109.46733 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47350 * 119.99393 * 1 2 3 31 31 H 0.96996 * 120.00227 * 0.02562 * 4 2 1 32 32 H 1.08999 * 109.47137 * 179.97438 * 6 5 4 33 33 H 1.08997 * 109.47464 * 300.00677 * 6 5 4 34 34 H 1.09005 * 109.46628 * 60.00287 * 6 5 4 35 35 H 1.08993 * 109.47004 * 299.99768 * 7 5 4 36 36 H 1.09001 * 109.47406 * 59.99854 * 7 5 4 37 37 H 1.08999 * 109.46829 * 179.97438 * 7 5 4 38 38 H 1.09005 * 109.47055 * 60.00610 * 8 5 4 39 39 H 1.08992 * 109.47430 * 300.00124 * 8 5 4 40 40 H 1.08998 * 109.46621 * 60.00590 * 12 10 9 41 41 H 1.08996 * 109.47266 * 300.00254 * 12 10 9 42 42 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 6 4.1563 -0.4463 1.2481 7 6 4.1554 -0.4457 -1.2503 8 6 4.1558 -2.6098 -0.0010 9 8 5.6078 -2.6098 -0.0021 10 6 6.2172 -3.8058 -0.0017 11 8 5.5591 -4.8192 -0.0008 12 6 7.7221 -3.8847 -0.0022 13 6 8.1493 -5.3299 -0.0021 14 6 8.3445 -5.9919 -1.2006 15 6 8.7365 -7.3161 -1.2040 16 6 8.9342 -7.9832 -0.0020 17 8 9.3200 -9.2847 -0.0019 18 6 9.6052 -9.8386 -1.1977 19 1 9.4440 -9.2764 -2.1055 20 6 10.1054 -11.1303 -1.2617 21 7 10.3022 -11.8151 -0.1558 22 14 10.5012 -11.8974 -2.9182 23 1 11.9109 -11.5993 -3.2777 24 1 10.3106 -13.3681 -2.8409 25 1 9.5969 -11.3348 -3.9531 26 6 8.7312 -7.3176 1.1999 27 6 8.3448 -5.9917 1.1964 28 1 -0.3633 -0.5137 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5137 -0.8900 31 1 1.6958 -2.0072 -0.0013 32 1 5.2463 -0.4467 1.2480 33 1 3.7930 0.5814 1.2486 34 1 3.7933 -0.9604 2.1381 35 1 3.7918 -0.9593 -2.1402 36 1 3.7922 0.5820 -1.2500 37 1 5.2454 -0.4454 -1.2505 38 1 3.7922 -3.1238 -0.8908 39 1 3.7928 -3.1234 0.8892 40 1 8.1121 -3.3902 0.8874 41 1 8.1115 -3.3912 -0.8926 42 1 8.1910 -5.4724 -2.1350 43 1 8.8891 -7.8322 -2.1402 44 1 10.6518 -12.7187 -0.2006 45 1 8.8798 -7.8349 2.1361 46 1 8.1911 -5.4722 2.1307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893438858.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:31 Heat of formation + Delta-G solvation = -130.533140 kcal Electronic energy + Delta-G solvation = -27827.470371 eV Core-core repulsion = 23683.063544 eV Total energy + Delta-G solvation = -4144.406827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.83056 -40.16472 -39.00905 -37.41356 -36.53050 -35.68138 -32.69704 -32.51311 -31.52953 -30.20522 -29.44868 -27.79540 -27.55230 -26.46388 -25.16093 -22.31322 -22.02125 -21.20893 -20.18330 -20.00363 -18.02843 -17.71093 -17.63831 -17.02416 -16.62247 -16.20877 -15.84304 -15.64483 -14.87513 -14.64797 -14.42226 -14.24948 -14.15844 -13.98377 -13.61495 -13.54837 -13.13976 -13.09700 -12.89607 -12.78429 -12.73621 -12.47660 -12.37768 -11.99069 -11.88456 -11.58175 -11.52710 -11.33963 -11.30713 -10.92864 -10.82302 -10.79896 -10.66418 -10.45366 -10.37462 -10.00949 -9.54260 -9.36819 -8.85759 -8.20415 -7.23407 -6.47784 -4.06364 1.98851 2.20605 2.23490 2.30727 2.43967 3.09154 3.12050 3.16379 3.17163 3.94573 4.11371 4.42727 4.42751 4.53879 4.66774 4.81022 4.87440 4.90819 5.05256 5.07642 5.13656 5.19518 5.25337 5.29563 5.30242 5.48357 5.54036 5.58228 5.61418 5.61750 5.68001 5.79777 5.99663 6.04611 6.13581 6.17468 6.34433 6.37578 6.65957 6.86643 7.01420 7.07504 7.18796 7.30829 7.40832 7.77865 7.81194 7.84107 7.97239 8.97691 9.67201 10.70046 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.027407 B = 0.001794 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.374834 B =15606.029661 C =15898.896500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.516 3.484 3 O -0.538 6.538 4 N -0.725 5.725 5 C 0.174 3.826 6 C -0.161 4.161 7 C -0.161 4.161 8 C 0.066 3.934 9 O -0.354 6.354 10 C 0.456 3.544 11 O -0.490 6.490 12 C -0.049 4.049 13 C -0.185 4.185 14 C -0.053 4.053 15 C -0.234 4.234 16 C 0.159 3.841 17 O -0.175 6.175 18 C -0.392 4.392 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.861 5.861 22 Si 0.942 3.058 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.192 4.192 27 C -0.056 4.056 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.401 0.599 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.128 0.872 44 H 0.270 0.730 45 H 0.118 0.882 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.866 21.702 -0.223 26.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.304 3.696 3 O -0.415 6.415 4 N -0.379 5.379 5 C 0.089 3.911 6 C -0.219 4.219 7 C -0.219 4.219 8 C -0.009 4.009 9 O -0.271 6.271 10 C 0.298 3.702 11 O -0.375 6.375 12 C -0.086 4.086 13 C -0.186 4.186 14 C -0.071 4.071 15 C -0.253 4.253 16 C 0.105 3.895 17 O -0.078 6.078 18 C -0.468 4.468 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.192 1.192 26 C -0.211 4.211 27 C -0.074 4.074 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.235 0.765 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.146 0.854 44 H 0.080 0.920 45 H 0.136 0.864 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.535 21.731 0.024 26.144 hybrid contribution -0.307 -1.089 -0.884 1.436 sum -14.842 20.641 -0.860 25.438 Atomic orbital electron populations 1.21939 0.91493 1.05668 1.04375 1.20737 0.90474 0.83213 0.75197 1.90681 1.70488 1.31416 1.48897 1.46076 1.06426 1.09174 1.76270 1.20184 0.79419 0.93647 0.97875 1.22189 1.02248 1.02088 0.95346 1.22187 1.02256 1.02085 0.95353 1.22983 0.78800 0.96001 1.03078 1.86472 1.21256 1.34542 1.84791 1.24302 0.92548 0.80755 0.72635 1.90713 1.66824 1.36175 1.43785 1.20095 0.86112 0.96980 1.05419 1.18625 1.12205 0.93770 0.93977 1.20533 0.96462 0.93976 0.96137 1.21112 1.10254 0.95437 0.98479 1.19410 0.91666 0.85106 0.93290 1.83976 1.72570 1.18232 1.33062 1.21345 1.44148 0.98239 0.83098 0.88995 1.25307 0.96288 0.95595 0.99337 1.70037 1.41341 1.11161 1.27029 0.85700 0.79100 0.78468 0.80096 1.19832 1.20235 1.19183 1.20161 1.10168 0.94521 0.96293 1.20424 0.97176 0.93560 0.96284 0.89326 0.88844 0.89323 0.76458 0.90703 0.90224 0.92777 0.92776 0.90224 0.90704 0.90783 0.90759 0.87677 0.87724 0.87633 0.85448 0.91968 0.86396 0.87187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.68 10.32 36.01 0.37 -0.31 16 2 C 0.52 3.98 7.36 -10.99 -0.08 3.90 16 3 O -0.54 -6.24 13.29 5.56 0.07 -6.16 16 4 N -0.73 -4.82 5.11 -47.60 -0.24 -5.07 16 5 C 0.17 1.48 0.89 -131.82 -0.12 1.37 16 6 C -0.16 -1.46 8.26 37.16 0.31 -1.15 16 7 C -0.16 -1.47 8.26 37.16 0.31 -1.16 16 8 C 0.07 0.63 4.44 37.16 0.16 0.79 16 9 O -0.35 -3.92 8.88 -39.24 -0.35 -4.27 16 10 C 0.46 6.13 7.95 36.01 0.29 6.42 16 11 O -0.49 -8.45 15.78 -18.75 -0.30 -8.74 16 12 C -0.05 -0.59 5.94 -29.04 -0.17 -0.76 16 13 C -0.18 -3.09 4.38 -104.58 -0.46 -3.55 16 14 C -0.05 -0.97 9.69 -39.61 -0.38 -1.35 16 15 C -0.23 -5.10 9.17 -39.39 -0.36 -5.46 16 16 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 17 O -0.18 -5.02 9.76 0.05 0.00 -5.02 16 18 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16 19 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.18 13.67 55.48 0.76 -24.42 16 22 Si 0.94 20.44 29.55 -169.99 -5.02 15.42 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 26 C -0.19 -4.09 9.99 -39.39 -0.39 -4.48 16 27 C -0.06 -1.00 9.69 -39.61 -0.38 -1.38 16 28 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.40 8.12 -51.93 -0.42 -0.03 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.40 1.66 8.47 -40.82 -0.35 1.31 16 32 H 0.07 0.67 7.68 -51.93 -0.40 0.27 16 33 H 0.08 0.84 6.17 -51.93 -0.32 0.52 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.84 6.17 -51.93 -0.32 0.52 16 37 H 0.07 0.68 7.68 -51.93 -0.40 0.28 16 38 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 39 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 40 H 0.11 1.03 8.08 -51.93 -0.42 0.61 16 41 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 42 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 44 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 46 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -34.72 387.94 -6.76 -41.48 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.55 Total: 4.12 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -0.98 Total: -13.18 kcal Atomic # 7 Polarization: -30.00 SS G_CDS: 0.52 Total: -29.48 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.57 Total: -24.20 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.72 -6.76 -41.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893438858.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.050 kcal (2) G-P(sol) polarization free energy of solvation -34.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds