Wall clock time and date at job start Tue Mar 31 2020 18:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21279 * 119.99993 * 2 1 4 4 N 1.34773 * 119.99671 * 180.02562 * 2 1 3 5 5 C 1.46505 * 120.00007 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.46835 * 59.99736 * 5 4 2 7 7 C 1.53001 * 109.47182 * 300.00220 * 5 4 2 8 8 C 1.52998 * 109.47219 * 179.97438 * 5 4 2 9 9 O 1.45203 * 109.47097 * 179.97438 * 8 5 4 10 10 C 1.34225 * 117.00065 * 179.97438 * 9 8 5 11 11 O 1.20830 * 120.00117 * 0.02562 * 10 9 8 12 12 C 1.50705 * 120.00089 * 180.02562 * 10 9 8 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47448 * 89.99502 * 22 20 18 24 24 H 1.48501 * 109.47175 * 209.99712 * 22 20 18 25 25 H 1.48506 * 109.47415 * 329.99678 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.08993 * 109.47055 * 240.00358 * 1 2 3 29 29 H 1.09001 * 109.46733 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47350 * 119.99393 * 1 2 3 31 31 H 0.96996 * 120.00227 * 0.02562 * 4 2 1 32 32 H 1.08999 * 109.47137 * 179.97438 * 6 5 4 33 33 H 1.08997 * 109.47464 * 300.00677 * 6 5 4 34 34 H 1.09005 * 109.46628 * 60.00287 * 6 5 4 35 35 H 1.08993 * 109.47004 * 299.99768 * 7 5 4 36 36 H 1.09001 * 109.47406 * 59.99854 * 7 5 4 37 37 H 1.08999 * 109.46829 * 179.97438 * 7 5 4 38 38 H 1.09005 * 109.47055 * 60.00610 * 8 5 4 39 39 H 1.08992 * 109.47430 * 300.00124 * 8 5 4 40 40 H 1.08998 * 109.46621 * 60.00590 * 12 10 9 41 41 H 1.08996 * 109.47266 * 300.00254 * 12 10 9 42 42 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 6 4.1563 -0.4463 1.2481 7 6 4.1554 -0.4457 -1.2503 8 6 4.1558 -2.6098 -0.0010 9 8 5.6078 -2.6098 -0.0021 10 6 6.2172 -3.8058 -0.0017 11 8 5.5591 -4.8192 -0.0008 12 6 7.7221 -3.8847 -0.0022 13 6 8.1493 -5.3299 -0.0021 14 6 8.3445 -5.9919 -1.2006 15 6 8.7365 -7.3161 -1.2040 16 6 8.9342 -7.9832 -0.0020 17 8 9.3200 -9.2847 -0.0019 18 6 9.6052 -9.8386 -1.1977 19 1 9.4440 -9.2764 -2.1055 20 6 10.1054 -11.1303 -1.2617 21 7 10.3022 -11.8151 -0.1558 22 14 10.5012 -11.8974 -2.9182 23 1 11.9109 -11.5993 -3.2777 24 1 10.3106 -13.3681 -2.8409 25 1 9.5969 -11.3348 -3.9531 26 6 8.7312 -7.3176 1.1999 27 6 8.3448 -5.9917 1.1964 28 1 -0.3633 -0.5137 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5137 -0.8900 31 1 1.6958 -2.0072 -0.0013 32 1 5.2463 -0.4467 1.2480 33 1 3.7930 0.5814 1.2486 34 1 3.7933 -0.9604 2.1381 35 1 3.7918 -0.9593 -2.1402 36 1 3.7922 0.5820 -1.2500 37 1 5.2454 -0.4454 -1.2505 38 1 3.7922 -3.1238 -0.8908 39 1 3.7928 -3.1234 0.8892 40 1 8.1121 -3.3902 0.8874 41 1 8.1115 -3.3912 -0.8926 42 1 8.1910 -5.4724 -2.1350 43 1 8.8891 -7.8322 -2.1402 44 1 10.6518 -12.7187 -0.2006 45 1 8.8798 -7.8349 2.1361 46 1 8.1911 -5.4722 2.1307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893438858.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:30 Heat of formation + Delta-G solvation = -153.344344 kcal Electronic energy + Delta-G solvation = -27828.459539 eV Core-core repulsion = 23683.063544 eV Total energy + Delta-G solvation = -4145.395995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.75140 -41.01327 -40.62107 -38.62577 -37.87434 -36.57893 -34.41982 -33.34265 -32.93621 -31.79815 -29.89000 -28.92114 -28.27887 -27.76537 -26.90719 -23.65811 -23.35406 -22.18705 -21.42807 -20.65863 -19.86004 -18.87962 -18.67806 -18.28029 -17.60680 -17.08070 -16.67904 -16.42513 -16.32268 -16.20665 -15.90904 -15.50858 -15.33444 -15.03921 -14.80272 -14.71802 -14.45011 -14.21775 -13.85127 -13.77707 -13.57835 -13.48993 -13.23839 -13.00349 -12.96203 -12.85338 -12.63356 -12.50159 -12.35934 -12.29993 -12.24519 -12.12600 -12.05503 -11.68898 -11.51008 -11.19184 -10.79867 -10.68037 -10.18110 -9.78145 -8.95256 -8.47934 -6.16174 0.57282 0.60367 1.27134 1.34612 1.41661 1.51741 1.52326 1.66460 2.17325 2.41578 2.84341 3.16647 3.42033 3.50361 3.70403 3.77760 3.92932 3.98578 4.03319 4.09934 4.18333 4.37927 4.40644 4.45522 4.52797 4.57653 4.68887 4.70291 4.74524 4.79169 4.79998 4.87641 4.89112 5.05481 5.13724 5.14051 5.25746 5.28076 5.31099 5.40735 5.50791 5.54745 5.70540 5.73343 6.02088 6.20888 6.56508 6.81755 6.96605 7.27019 7.77138 8.75249 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.027407 B = 0.001794 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.374834 B =15606.029661 C =15898.896500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.510 3.490 3 O -0.582 6.582 4 N -0.717 5.717 5 C 0.177 3.823 6 C -0.157 4.157 7 C -0.157 4.157 8 C 0.067 3.933 9 O -0.344 6.344 10 C 0.465 3.535 11 O -0.534 6.534 12 C -0.049 4.049 13 C -0.158 4.158 14 C -0.055 4.055 15 C -0.245 4.245 16 C 0.116 3.884 17 O -0.232 6.232 18 C -0.414 4.414 19 H 0.102 0.898 20 C -0.024 4.024 21 N -0.920 5.920 22 Si 1.020 2.980 23 H -0.262 1.262 24 H -0.271 1.271 25 H -0.254 1.254 26 C -0.207 4.207 27 C -0.053 4.053 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.415 0.585 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.119 0.881 44 H 0.273 0.727 45 H 0.113 0.887 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.096 24.410 -1.253 29.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.300 3.700 3 O -0.462 6.462 4 N -0.372 5.372 5 C 0.091 3.909 6 C -0.214 4.214 7 C -0.215 4.215 8 C -0.007 4.007 9 O -0.260 6.260 10 C 0.309 3.691 11 O -0.423 6.423 12 C -0.085 4.085 13 C -0.159 4.159 14 C -0.073 4.073 15 C -0.265 4.265 16 C 0.066 3.934 17 O -0.139 6.139 18 C -0.490 4.490 19 H 0.119 0.881 20 C -0.221 4.221 21 N -0.558 5.558 22 Si 0.839 3.161 23 H -0.186 1.186 24 H -0.196 1.196 25 H -0.177 1.177 26 C -0.227 4.227 27 C -0.070 4.070 28 H 0.127 0.873 29 H 0.107 0.893 30 H 0.127 0.873 31 H 0.252 0.748 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.131 0.869 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.800 24.501 -1.003 29.171 hybrid contribution -0.086 -1.512 -0.457 1.582 sum -15.886 22.989 -1.460 27.982 Atomic orbital electron populations 1.21945 0.88344 1.06067 1.06320 1.21450 0.91973 0.82594 0.74018 1.90669 1.71618 1.32942 1.50956 1.46009 1.05727 1.09816 1.75639 1.20076 0.80549 0.92894 0.97358 1.22132 1.02291 1.01214 0.95812 1.22131 1.02290 1.01220 0.95827 1.23087 0.77729 0.96426 1.03490 1.86450 1.22281 1.33168 1.84129 1.24340 0.92820 0.80569 0.71377 1.90730 1.67826 1.37616 1.46088 1.20232 0.85481 0.93789 1.09043 1.19186 1.07886 0.96044 0.92770 1.20966 0.95170 0.92572 0.98595 1.21238 1.10822 0.97125 0.97279 1.19982 0.93392 0.84637 0.95435 1.83940 1.75711 1.20619 1.33604 1.21830 1.44595 0.98994 0.83615 0.88099 1.26612 0.95877 0.95811 1.03802 1.70184 1.43973 1.11813 1.29846 0.84576 0.79375 0.77394 0.74793 1.18646 1.19597 1.17732 1.20449 1.10662 0.96219 0.95322 1.20909 0.95353 0.92059 0.98726 0.87268 0.89279 0.87279 0.74802 0.90569 0.91877 0.92333 0.92374 0.91867 0.90585 0.90444 0.90353 0.84007 0.84258 0.84055 0.86355 0.91822 0.86861 0.83225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.32 71.24 0.74 -0.16 16 2 C 0.51 7.06 7.36 87.66 0.65 7.71 16 3 O -0.58 -13.21 13.29 -3.03 -0.04 -13.25 16 4 N -0.72 -7.98 5.11 -422.92 -2.16 -10.14 16 5 C 0.18 2.63 0.89 3.60 0.00 2.63 16 6 C -0.16 -2.55 8.26 71.98 0.59 -1.96 16 7 C -0.16 -2.57 8.26 71.98 0.59 -1.98 16 8 C 0.07 1.07 4.44 71.98 0.32 1.39 16 9 O -0.34 -6.28 8.88 -51.37 -0.46 -6.73 16 10 C 0.46 10.52 7.95 71.24 0.57 11.09 16 11 O -0.53 -16.78 15.78 21.95 0.35 -16.43 16 12 C -0.05 -0.91 5.94 29.10 0.17 -0.74 16 13 C -0.16 -4.69 4.38 -19.84 -0.09 -4.77 16 14 C -0.06 -1.87 9.69 22.25 0.22 -1.66 16 15 C -0.25 -10.81 9.17 22.39 0.21 -10.61 16 16 C 0.12 5.87 6.65 22.58 0.15 6.02 16 17 O -0.23 -14.21 9.76 -22.72 -0.22 -14.43 16 18 C -0.41 -24.41 9.49 67.92 0.64 -23.77 16 19 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 20 C -0.02 -1.35 5.49 84.84 0.47 -0.88 16 21 N -0.92 -56.89 13.67 21.62 0.30 -56.60 16 22 Si 1.02 43.08 29.55 68.60 2.03 45.11 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 26 C -0.21 -8.94 9.99 22.39 0.22 -8.71 16 27 C -0.05 -1.73 9.69 22.25 0.22 -1.52 16 28 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.09 0.60 8.12 -2.39 -0.02 0.58 16 30 H 0.11 0.16 8.14 -2.39 -0.02 0.15 16 31 H 0.42 2.29 8.47 -92.71 -0.79 1.51 16 32 H 0.08 1.19 7.68 -2.39 -0.02 1.17 16 33 H 0.06 1.28 6.17 -2.39 -0.01 1.26 16 34 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 1.29 6.17 -2.39 -0.01 1.27 16 37 H 0.08 1.20 7.68 -2.39 -0.02 1.18 16 38 H 0.08 1.23 8.13 -2.38 -0.02 1.21 16 39 H 0.08 1.23 8.13 -2.39 -0.02 1.21 16 40 H 0.14 1.78 8.08 -2.39 -0.02 1.77 16 41 H 0.14 1.82 8.08 -2.39 -0.02 1.80 16 42 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 43 H 0.12 5.30 5.64 -2.91 -0.02 5.29 16 44 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 45 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 46 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -82.77 387.94 5.68 -77.09 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.22 Total: 23.29 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 5.66 Total: -27.92 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: -1.86 Total: -66.74 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -0.37 Total: -50.84 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -82.77 5.68 -77.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893438858.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.250 kcal (2) G-P(sol) polarization free energy of solvation -82.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds