Wall clock time and date at job start Tue Mar 31 2020 18:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21279 * 120.00291 * 2 1 4 4 N 1.34776 * 119.99501 * 180.02562 * 2 1 3 5 5 C 1.46498 * 119.99783 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47001 * 60.00137 * 5 4 2 7 7 C 1.53008 * 109.47364 * 300.00373 * 5 4 2 8 8 C 1.52996 * 109.47229 * 180.02562 * 5 4 2 9 9 O 1.45198 * 109.47342 * 180.02562 * 8 5 4 10 10 C 1.34231 * 117.00472 * 179.97438 * 9 8 5 11 11 O 1.20827 * 119.99497 * 359.97438 * 10 9 8 12 12 C 1.50701 * 120.00166 * 179.97438 * 10 9 8 13 13 C 1.50705 * 109.46907 * 180.02562 * 12 10 9 14 14 C 1.38324 * 119.96155 * 269.72461 * 13 12 10 15 15 C 1.38284 * 120.13509 * 179.76937 * 14 13 12 16 16 C 1.38115 * 120.07005 * 0.50336 * 15 14 13 17 17 C 1.38864 * 119.93177 * 359.75184 * 16 15 14 18 18 O 1.35748 * 120.07194 * 179.97438 * 17 16 15 19 19 C 1.34829 * 116.99703 * 354.48385 * 18 17 16 20 20 H 1.08003 * 120.00171 * 5.05888 * 19 18 17 21 21 C 1.38655 * 119.99877 * 185.05576 * 19 18 17 22 22 N 1.31558 * 120.00213 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00197 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47289 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47242 * 120.00358 * 23 21 19 26 26 H 1.48507 * 109.47426 * 240.00380 * 23 21 19 27 27 C 1.38077 * 119.96544 * 89.99777 * 13 12 10 28 28 H 1.09002 * 109.46813 * 239.99960 * 1 2 3 29 29 H 1.09005 * 109.46457 * 359.97438 * 1 2 3 30 30 H 1.08991 * 109.47350 * 119.99241 * 1 2 3 31 31 H 0.96997 * 120.00545 * 359.97438 * 4 2 1 32 32 H 1.08996 * 109.47303 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.46859 * 300.00127 * 6 5 4 34 34 H 1.08994 * 109.47162 * 59.99916 * 6 5 4 35 35 H 1.08999 * 109.46545 * 299.99913 * 7 5 4 36 36 H 1.08999 * 109.46769 * 59.99713 * 7 5 4 37 37 H 1.08996 * 109.46914 * 180.02562 * 7 5 4 38 38 H 1.08995 * 109.47543 * 60.00168 * 8 5 4 39 39 H 1.09007 * 109.47204 * 299.99952 * 8 5 4 40 40 H 1.08995 * 109.47086 * 299.99526 * 12 10 9 41 41 H 1.09000 * 109.46962 * 59.99954 * 12 10 9 42 42 H 1.07997 * 119.92906 * 359.97438 * 14 13 12 43 43 H 1.08004 * 119.96159 * 180.25538 * 15 14 13 44 44 H 1.08003 * 120.03966 * 179.76723 * 16 15 14 45 45 H 0.96994 * 120.00578 * 179.97438 * 22 21 19 46 46 H 1.07993 * 120.03658 * 359.95511 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1673 -0.0011 6 6 4.1563 -0.4464 1.2482 7 6 4.1555 -0.4457 -1.2504 8 6 4.1558 -2.6098 -0.0023 9 8 5.6078 -2.6099 -0.0022 10 6 6.2172 -3.8059 -0.0026 11 8 5.5590 -4.8192 -0.0026 12 6 7.7221 -3.8848 -0.0032 13 6 8.1493 -5.3300 -0.0042 14 6 8.3511 -5.9916 1.1937 15 6 8.7385 -7.3191 1.1969 16 6 8.9353 -7.9855 0.0033 17 6 8.7387 -7.3226 -1.2010 18 8 8.9317 -7.9747 -2.3758 19 6 9.4236 -9.2281 -2.3064 20 1 9.5683 -9.6991 -1.3453 21 6 9.7436 -9.9126 -3.4690 22 7 9.5678 -9.3389 -4.6398 23 14 10.4258 -11.6489 -3.3730 24 1 10.5281 -12.0626 -1.9504 25 1 9.5189 -12.5776 -4.0941 26 1 11.7724 -11.6870 -3.9981 27 6 8.3444 -5.9907 -1.2009 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3632 1.0277 0.0005 30 1 -0.3633 -0.5137 -0.8900 31 1 1.6959 -2.0073 -0.0005 32 1 5.2463 -0.4468 1.2480 33 1 3.7930 0.5813 1.2485 34 1 3.7933 -0.9604 2.1381 35 1 3.7918 -0.9593 -2.1403 36 1 3.7921 0.5819 -1.2499 37 1 5.2454 -0.4462 -1.2509 38 1 3.7922 -3.1231 -0.8924 39 1 3.7928 -3.1243 0.8876 40 1 8.1115 -3.3906 -0.8932 41 1 8.1122 -3.3908 0.8867 42 1 8.2026 -5.4712 2.1283 43 1 8.8913 -7.8341 2.1339 44 1 9.2415 -9.0212 0.0064 45 1 9.7920 -9.8175 -5.4531 46 1 8.1903 -5.4725 -2.1358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893441621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:35 Heat of formation + Delta-G solvation = -129.860860 kcal Electronic energy + Delta-G solvation = -27987.549289 eV Core-core repulsion = 23843.171615 eV Total energy + Delta-G solvation = -4144.377675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.81976 -40.15417 -39.00268 -37.38182 -36.49850 -35.67521 -32.67902 -32.44041 -32.07807 -29.46372 -29.27424 -27.98616 -27.51384 -26.65890 -25.26446 -22.44883 -21.67467 -21.24434 -20.33436 -19.97308 -17.80450 -17.69681 -17.51739 -16.99729 -16.63779 -16.10941 -15.80732 -15.61523 -15.14301 -14.77502 -14.41622 -14.24186 -14.14179 -13.96724 -13.60708 -13.54672 -13.09797 -13.05542 -12.90104 -12.74282 -12.57671 -12.46299 -12.34126 -11.96967 -11.85978 -11.58942 -11.49378 -11.32553 -11.28101 -10.89951 -10.81959 -10.78102 -10.66362 -10.44352 -10.39576 -9.98031 -9.50831 -9.36023 -8.85416 -8.14574 -7.25696 -6.45279 -4.04421 1.87702 2.26735 2.29587 2.32505 2.43375 3.10520 3.13365 3.16575 3.19005 3.95837 4.14141 4.44878 4.46179 4.54930 4.70261 4.80457 4.84080 4.93737 4.98603 5.08287 5.12209 5.18192 5.23797 5.33411 5.45819 5.51598 5.57958 5.59938 5.63261 5.66108 5.71158 5.88779 6.02964 6.09055 6.13146 6.17084 6.29572 6.34621 6.62065 6.87170 7.04550 7.10809 7.19844 7.33311 7.41042 7.77039 7.82461 7.84825 7.99517 9.00409 9.70308 10.72876 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.001946 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.014065 B =14388.696626 C =15006.889667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.516 3.484 3 O -0.538 6.538 4 N -0.725 5.725 5 C 0.174 3.826 6 C -0.161 4.161 7 C -0.162 4.162 8 C 0.067 3.933 9 O -0.352 6.352 10 C 0.461 3.539 11 O -0.488 6.488 12 C -0.063 4.063 13 C -0.045 4.045 14 C -0.195 4.195 15 C -0.074 4.074 16 C -0.227 4.227 17 C 0.154 3.846 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.093 0.907 21 C 0.038 3.962 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.172 4.172 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.401 0.599 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.127 0.873 45 H 0.269 0.731 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.258 15.967 10.773 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.304 3.696 3 O -0.415 6.415 4 N -0.379 5.379 5 C 0.089 3.911 6 C -0.218 4.218 7 C -0.220 4.220 8 C -0.008 4.008 9 O -0.269 6.269 10 C 0.303 3.697 11 O -0.373 6.373 12 C -0.100 4.100 13 C -0.045 4.045 14 C -0.214 4.214 15 C -0.093 4.093 16 C -0.246 4.246 17 C 0.100 3.900 18 O -0.082 6.082 19 C -0.467 4.467 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.498 5.498 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.201 1.201 27 C -0.191 4.191 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.235 0.765 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.145 0.855 45 H 0.079 0.921 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.047 16.417 10.279 23.354 hybrid contribution -0.125 -1.632 0.066 1.638 sum -13.172 14.785 10.345 22.341 Atomic orbital electron populations 1.21940 0.91499 1.05654 1.04370 1.20736 0.90469 0.83211 0.75201 1.90680 1.70480 1.31419 1.48898 1.46070 1.06413 1.09178 1.76264 1.20183 0.79432 0.93597 0.97906 1.22187 1.02243 1.02098 0.95318 1.22198 1.02307 1.02085 0.95375 1.23001 0.78572 0.96088 1.03180 1.86452 1.21412 1.34246 1.84772 1.23911 0.92122 0.80890 0.72782 1.90728 1.66769 1.36114 1.43672 1.20264 0.86851 0.96775 1.06135 1.18657 0.99951 0.92514 0.93382 1.20373 1.09519 0.95514 0.95997 1.20692 0.97607 0.94063 0.96896 1.21211 1.09920 1.01411 0.92095 1.19269 0.92808 0.91273 0.86639 1.83977 1.71434 1.28084 1.24679 1.21373 1.42718 0.87919 0.94735 0.89011 1.25292 0.96996 1.00091 0.94199 1.70046 1.44771 1.37515 0.97451 0.85642 0.78586 0.80344 0.78812 1.19101 1.20172 1.20133 1.19969 1.09051 0.92951 0.97165 0.89354 0.88852 0.89302 0.76454 0.90706 0.90210 0.92815 0.92678 0.90212 0.90662 0.90602 0.90745 0.86935 0.87073 0.87735 0.87316 0.85486 0.92082 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.74 10.32 36.01 0.37 -0.37 16 2 C 0.52 4.17 7.36 -10.98 -0.08 4.09 16 3 O -0.54 -6.43 13.29 5.56 0.07 -6.36 16 4 N -0.73 -5.11 5.11 -47.60 -0.24 -5.35 16 5 C 0.17 1.56 0.89 -131.82 -0.12 1.45 16 6 C -0.16 -1.49 8.26 37.16 0.31 -1.19 16 7 C -0.16 -1.58 8.26 37.16 0.31 -1.28 16 8 C 0.07 0.66 4.44 37.16 0.16 0.83 16 9 O -0.35 -4.10 8.88 -39.26 -0.35 -4.45 16 10 C 0.46 6.53 7.95 36.01 0.29 6.82 16 11 O -0.49 -8.74 15.78 -18.75 -0.30 -9.04 16 12 C -0.06 -0.81 5.94 -29.03 -0.17 -0.99 16 13 C -0.04 -0.79 4.37 -104.65 -0.46 -1.25 16 14 C -0.20 -3.38 9.70 -39.53 -0.38 -3.76 16 15 C -0.07 -1.38 10.04 -39.61 -0.40 -1.78 16 16 C -0.23 -4.99 9.17 -39.39 -0.36 -5.36 16 17 C 0.15 3.76 6.65 -39.10 -0.26 3.50 16 18 O -0.18 -5.12 9.76 0.06 0.00 -5.12 16 19 C -0.39 -10.98 9.49 30.89 0.29 -10.69 16 20 H 0.09 2.39 5.20 -52.48 -0.27 2.11 16 21 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 22 N -0.86 -25.37 13.67 55.48 0.76 -24.61 16 23 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 27 C -0.17 -3.66 9.65 -39.39 -0.38 -4.04 16 28 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.40 1.81 8.47 -40.82 -0.35 1.46 16 32 H 0.07 0.69 7.68 -51.93 -0.40 0.29 16 33 H 0.08 0.86 6.17 -51.93 -0.32 0.54 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.89 6.17 -51.93 -0.32 0.57 16 37 H 0.07 0.74 7.68 -51.93 -0.40 0.34 16 38 H 0.08 0.77 8.13 -51.93 -0.42 0.34 16 39 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 40 H 0.11 1.25 8.08 -51.93 -0.42 0.83 16 41 H 0.11 1.11 8.08 -51.93 -0.42 0.69 16 42 H 0.10 1.51 8.06 -52.49 -0.42 1.08 16 43 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 44 H 0.13 2.78 5.64 -52.48 -0.30 2.49 16 45 H 0.27 7.23 8.31 -40.82 -0.34 6.90 16 46 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -35.11 387.94 -6.76 -41.87 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.55 Total: 4.72 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -0.98 Total: -13.05 kcal Atomic # 7 Polarization: -30.48 SS G_CDS: 0.52 Total: -29.96 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.57 Total: -24.97 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.11 -6.76 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893441621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.989 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds