Wall clock time and date at job start Tue Mar 31 2020 18:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21279 * 120.00291 * 2 1 4 4 N 1.34776 * 119.99501 * 180.02562 * 2 1 3 5 5 C 1.46498 * 119.99783 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47001 * 60.00137 * 5 4 2 7 7 C 1.53008 * 109.47364 * 300.00373 * 5 4 2 8 8 C 1.52996 * 109.47229 * 180.02562 * 5 4 2 9 9 O 1.45198 * 109.47342 * 180.02562 * 8 5 4 10 10 C 1.34231 * 117.00472 * 179.97438 * 9 8 5 11 11 O 1.20827 * 119.99497 * 359.97438 * 10 9 8 12 12 C 1.50701 * 120.00166 * 179.97438 * 10 9 8 13 13 C 1.50705 * 109.46907 * 180.02562 * 12 10 9 14 14 C 1.38324 * 119.96155 * 269.72461 * 13 12 10 15 15 C 1.38284 * 120.13509 * 179.76937 * 14 13 12 16 16 C 1.38115 * 120.07005 * 0.50336 * 15 14 13 17 17 C 1.38864 * 119.93177 * 359.75184 * 16 15 14 18 18 O 1.35748 * 120.07194 * 179.97438 * 17 16 15 19 19 C 1.34829 * 116.99703 * 354.48385 * 18 17 16 20 20 H 1.08003 * 120.00171 * 5.05888 * 19 18 17 21 21 C 1.38655 * 119.99877 * 185.05576 * 19 18 17 22 22 N 1.31558 * 120.00213 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00197 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47289 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47242 * 120.00358 * 23 21 19 26 26 H 1.48507 * 109.47426 * 240.00380 * 23 21 19 27 27 C 1.38077 * 119.96544 * 89.99777 * 13 12 10 28 28 H 1.09002 * 109.46813 * 239.99960 * 1 2 3 29 29 H 1.09005 * 109.46457 * 359.97438 * 1 2 3 30 30 H 1.08991 * 109.47350 * 119.99241 * 1 2 3 31 31 H 0.96997 * 120.00545 * 359.97438 * 4 2 1 32 32 H 1.08996 * 109.47303 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.46859 * 300.00127 * 6 5 4 34 34 H 1.08994 * 109.47162 * 59.99916 * 6 5 4 35 35 H 1.08999 * 109.46545 * 299.99913 * 7 5 4 36 36 H 1.08999 * 109.46769 * 59.99713 * 7 5 4 37 37 H 1.08996 * 109.46914 * 180.02562 * 7 5 4 38 38 H 1.08995 * 109.47543 * 60.00168 * 8 5 4 39 39 H 1.09007 * 109.47204 * 299.99952 * 8 5 4 40 40 H 1.08995 * 109.47086 * 299.99526 * 12 10 9 41 41 H 1.09000 * 109.46962 * 59.99954 * 12 10 9 42 42 H 1.07997 * 119.92906 * 359.97438 * 14 13 12 43 43 H 1.08004 * 119.96159 * 180.25538 * 15 14 13 44 44 H 1.08003 * 120.03966 * 179.76723 * 16 15 14 45 45 H 0.96994 * 120.00578 * 179.97438 * 22 21 19 46 46 H 1.07993 * 120.03658 * 359.95511 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1673 -0.0011 6 6 4.1563 -0.4464 1.2482 7 6 4.1555 -0.4457 -1.2504 8 6 4.1558 -2.6098 -0.0023 9 8 5.6078 -2.6099 -0.0022 10 6 6.2172 -3.8059 -0.0026 11 8 5.5590 -4.8192 -0.0026 12 6 7.7221 -3.8848 -0.0032 13 6 8.1493 -5.3300 -0.0042 14 6 8.3511 -5.9916 1.1937 15 6 8.7385 -7.3191 1.1969 16 6 8.9353 -7.9855 0.0033 17 6 8.7387 -7.3226 -1.2010 18 8 8.9317 -7.9747 -2.3758 19 6 9.4236 -9.2281 -2.3064 20 1 9.5683 -9.6991 -1.3453 21 6 9.7436 -9.9126 -3.4690 22 7 9.5678 -9.3389 -4.6398 23 14 10.4258 -11.6489 -3.3730 24 1 10.5281 -12.0626 -1.9504 25 1 9.5189 -12.5776 -4.0941 26 1 11.7724 -11.6870 -3.9981 27 6 8.3444 -5.9907 -1.2009 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3632 1.0277 0.0005 30 1 -0.3633 -0.5137 -0.8900 31 1 1.6959 -2.0073 -0.0005 32 1 5.2463 -0.4468 1.2480 33 1 3.7930 0.5813 1.2485 34 1 3.7933 -0.9604 2.1381 35 1 3.7918 -0.9593 -2.1403 36 1 3.7921 0.5819 -1.2499 37 1 5.2454 -0.4462 -1.2509 38 1 3.7922 -3.1231 -0.8924 39 1 3.7928 -3.1243 0.8876 40 1 8.1115 -3.3906 -0.8932 41 1 8.1122 -3.3908 0.8867 42 1 8.2026 -5.4712 2.1283 43 1 8.8913 -7.8341 2.1339 44 1 9.2415 -9.0212 0.0064 45 1 9.7920 -9.8175 -5.4531 46 1 8.1903 -5.4725 -2.1358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893441621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:34 Heat of formation + Delta-G solvation = -153.001887 kcal Electronic energy + Delta-G solvation = -27988.552759 eV Core-core repulsion = 23843.171615 eV Total energy + Delta-G solvation = -4145.381145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.80707 -41.03148 -40.62294 -38.61444 -37.90348 -36.61547 -34.35880 -33.64762 -33.23603 -30.95334 -29.91052 -29.18539 -28.29263 -27.76354 -27.19362 -23.64323 -23.19192 -22.31203 -21.60407 -20.67213 -19.52203 -18.84476 -18.74329 -18.23786 -17.67849 -17.00229 -16.75725 -16.67927 -16.39266 -16.21355 -16.10065 -15.49644 -15.37947 -14.98298 -14.81557 -14.73970 -14.41777 -14.08718 -13.85825 -13.83510 -13.58129 -13.49636 -13.24839 -13.00906 -12.97407 -12.88762 -12.64544 -12.51857 -12.42994 -12.25978 -12.24360 -12.09687 -12.08279 -11.72641 -11.58775 -11.21284 -10.81820 -10.69094 -10.19027 -9.70140 -9.00290 -8.47517 -6.15959 0.41688 0.73294 1.20022 1.34489 1.40775 1.47416 1.53011 1.65957 2.17140 2.39265 2.84319 3.16051 3.39253 3.40398 3.68450 3.73174 3.91302 3.96995 4.04234 4.09301 4.29845 4.34028 4.37631 4.41402 4.52483 4.54866 4.62428 4.68671 4.72943 4.73302 4.78764 4.86193 4.87909 5.02649 5.12247 5.13463 5.23076 5.27142 5.30029 5.36456 5.49334 5.62288 5.69980 5.72887 6.02157 6.21030 6.55787 6.74249 6.97223 7.26404 7.78300 8.76072 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.001946 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.014065 B =14388.696626 C =15006.889667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.510 3.490 3 O -0.582 6.582 4 N -0.717 5.717 5 C 0.178 3.822 6 C -0.155 4.155 7 C -0.159 4.159 8 C 0.067 3.933 9 O -0.343 6.343 10 C 0.469 3.531 11 O -0.532 6.532 12 C -0.062 4.062 13 C -0.037 4.037 14 C -0.176 4.176 15 C -0.073 4.073 16 C -0.242 4.242 17 C 0.110 3.890 18 O -0.234 6.234 19 C -0.413 4.413 20 H 0.102 0.898 21 C -0.025 4.025 22 N -0.921 5.921 23 Si 1.020 2.980 24 H -0.251 1.251 25 H -0.269 1.269 26 H -0.267 1.267 27 C -0.189 4.189 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.415 0.585 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.132 0.868 41 H 0.156 0.844 42 H 0.152 0.848 43 H 0.147 0.853 44 H 0.118 0.882 45 H 0.272 0.728 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.891 16.486 13.818 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.300 3.700 3 O -0.462 6.462 4 N -0.372 5.372 5 C 0.092 3.908 6 C -0.213 4.213 7 C -0.217 4.217 8 C -0.008 4.008 9 O -0.259 6.259 10 C 0.313 3.687 11 O -0.420 6.420 12 C -0.099 4.099 13 C -0.037 4.037 14 C -0.194 4.194 15 C -0.091 4.091 16 C -0.261 4.261 17 C 0.060 3.940 18 O -0.141 6.141 19 C -0.489 4.489 20 H 0.119 0.881 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.839 3.161 24 H -0.174 1.174 25 H -0.194 1.194 26 H -0.192 1.192 27 C -0.208 4.208 28 H 0.129 0.871 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.252 0.748 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.150 0.850 41 H 0.174 0.826 42 H 0.169 0.831 43 H 0.165 0.835 44 H 0.136 0.864 45 H 0.081 0.919 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.707 16.967 13.379 25.588 hybrid contribution -0.047 -1.504 -0.640 1.635 sum -13.754 15.463 12.739 24.302 Atomic orbital electron populations 1.21946 0.88258 1.06090 1.06332 1.21468 0.92000 0.82565 0.74002 1.90669 1.71619 1.32937 1.50951 1.46003 1.05645 1.09860 1.75658 1.20066 0.80635 0.92758 0.97373 1.22123 1.02276 1.01229 0.95700 1.22149 1.02232 1.01334 0.95937 1.23123 0.77471 0.96609 1.03588 1.86437 1.22498 1.32842 1.84094 1.24013 0.92418 0.80742 0.71510 1.90731 1.67745 1.37560 1.45987 1.20391 0.86269 0.93877 1.09359 1.19122 0.97711 0.94804 0.92054 1.21018 1.05768 0.94980 0.97635 1.21151 0.96197 0.94853 0.96916 1.21335 1.10637 1.01366 0.92767 1.19878 0.94690 0.92746 0.86648 1.83938 1.74181 1.28834 1.27107 1.21862 1.43047 0.88406 0.95555 0.88116 1.26610 0.97164 1.04964 0.93481 1.70190 1.47473 1.39915 0.98402 0.84513 0.77902 0.74065 0.79609 1.17438 1.19443 1.19217 1.20245 1.09579 0.92209 0.98803 0.87129 0.89236 0.87384 0.74785 0.90591 0.91814 0.92018 0.92657 0.91679 0.90749 0.90784 0.89817 0.84982 0.82616 0.83084 0.83517 0.86399 0.91864 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.32 71.24 0.74 -0.31 16 2 C 0.51 7.61 7.36 87.66 0.65 8.26 16 3 O -0.58 -13.83 13.29 -3.03 -0.04 -13.87 16 4 N -0.72 -8.90 5.11 -422.91 -2.16 -11.06 16 5 C 0.18 2.92 0.89 3.61 0.00 2.93 16 6 C -0.16 -2.65 8.26 71.98 0.59 -2.06 16 7 C -0.16 -2.99 8.26 71.98 0.59 -2.40 16 8 C 0.07 1.19 4.44 71.98 0.32 1.51 16 9 O -0.34 -7.07 8.88 -51.43 -0.46 -7.53 16 10 C 0.47 11.97 7.95 71.24 0.57 12.53 16 11 O -0.53 -18.09 15.78 21.96 0.35 -17.74 16 12 C -0.06 -1.37 5.94 29.10 0.17 -1.20 16 13 C -0.04 -1.20 4.37 -19.88 -0.09 -1.28 16 14 C -0.18 -5.34 9.70 22.30 0.22 -5.12 16 15 C -0.07 -2.51 10.04 22.25 0.22 -2.29 16 16 C -0.24 -10.71 9.17 22.39 0.21 -10.51 16 17 C 0.11 5.62 6.65 22.58 0.15 5.77 16 18 O -0.23 -14.35 9.76 -22.71 -0.22 -14.58 16 19 C -0.41 -24.41 9.49 67.92 0.64 -23.77 16 20 H 0.10 5.48 5.20 -2.91 -0.02 5.47 16 21 C -0.03 -1.44 5.49 84.83 0.47 -0.98 16 22 N -0.92 -57.21 13.67 21.61 0.30 -56.92 16 23 Si 1.02 43.33 29.55 68.60 2.03 45.36 16 24 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 26 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 27 C -0.19 -8.15 9.65 22.39 0.22 -7.93 16 28 H 0.11 0.22 8.14 -2.39 -0.02 0.21 16 29 H 0.09 0.67 8.12 -2.38 -0.02 0.65 16 30 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.42 2.80 8.47 -92.71 -0.79 2.02 16 32 H 0.08 1.25 7.68 -2.39 -0.02 1.24 16 33 H 0.06 1.34 6.17 -2.39 -0.01 1.32 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.45 6.17 -2.39 -0.01 1.44 16 37 H 0.07 1.38 7.68 -2.39 -0.02 1.36 16 38 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 39 H 0.08 1.38 8.13 -2.38 -0.02 1.36 16 40 H 0.13 2.49 8.08 -2.39 -0.02 2.47 16 41 H 0.16 2.13 8.08 -2.39 -0.02 2.11 16 42 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 43 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 44 H 0.12 5.31 5.64 -2.91 -0.02 5.29 16 45 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -83.47 387.94 5.68 -77.79 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.22 Total: 25.38 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 5.67 Total: -26.85 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: -1.86 Total: -67.97 kcal Atomic # 8 Polarization: -53.34 SS G_CDS: -0.37 Total: -53.72 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -83.47 5.68 -77.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893441621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.211 kcal (2) G-P(sol) polarization free energy of solvation -83.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds