Wall clock time and date at job start Tue Mar 31 2020 18:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00209 * 2 1 4 4 H 1.09001 * 109.56783 * 330.15968 * 3 2 1 5 5 C 1.53093 * 109.52048 * 90.30894 * 3 2 1 6 6 O 1.42904 * 109.41398 * 177.51848 * 5 3 2 7 7 C 1.42910 * 114.09379 * 298.84277 * 6 5 3 8 8 C 1.53093 * 109.41399 * 61.16299 * 7 6 5 9 9 C 1.53169 * 109.52492 * 210.00052 * 3 2 1 10 10 H 1.09009 * 109.61570 * 303.02399 * 9 3 2 11 11 N 1.46498 * 109.54588 * 63.24505 * 9 3 2 12 12 C 1.46499 * 119.99945 * 59.55327 * 11 9 3 13 13 C 1.34776 * 119.99856 * 239.55702 * 11 9 3 14 14 O 1.21588 * 120.00431 * 355.01496 * 13 11 9 15 15 C 1.47540 * 119.99964 * 175.01482 * 13 11 9 16 16 C 1.39670 * 120.19644 * 316.50321 * 15 13 11 17 17 C 1.37817 * 119.91809 * 180.02562 * 16 15 13 18 18 C 1.38570 * 120.32942 * 0.02562 * 17 16 15 19 19 C 1.38026 * 120.39862 * 359.74121 * 18 17 16 20 20 C 1.38843 * 120.06967 * 0.51640 * 19 18 17 21 21 O 1.35517 * 120.16107 * 179.77001 * 20 19 18 22 22 C 1.34814 * 116.99995 * 5.34743 * 21 20 19 23 23 H 1.07996 * 120.00542 * 356.34977 * 22 21 20 24 24 C 1.38707 * 120.00210 * 176.34648 * 22 21 20 25 25 N 1.31514 * 120.00234 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99650 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47202 * 269.99895 * 26 24 22 28 28 H 1.48497 * 109.47132 * 149.99881 * 26 24 22 29 29 H 1.48504 * 109.47212 * 29.99471 * 26 24 22 30 30 H 1.09006 * 109.46931 * 59.99913 * 1 2 3 31 31 H 1.08997 * 109.46821 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47281 * 300.00055 * 1 2 3 33 33 H 1.09005 * 109.47718 * 57.53791 * 5 3 2 34 34 H 1.08998 * 109.49010 * 297.50582 * 5 3 2 35 35 H 1.08993 * 109.48212 * 301.17594 * 7 6 5 36 36 H 1.08998 * 109.48735 * 181.14366 * 7 6 5 37 37 H 1.09001 * 109.52127 * 182.48280 * 8 7 6 38 38 H 1.09001 * 109.57716 * 62.32533 * 8 7 6 39 39 H 1.09000 * 109.47390 * 265.82072 * 12 11 9 40 40 H 1.09004 * 109.46952 * 25.82520 * 12 11 9 41 41 H 1.09001 * 109.46914 * 145.81782 * 12 11 9 42 42 H 1.07998 * 120.03568 * 0.02562 * 16 15 13 43 43 H 1.08008 * 119.83655 * 180.02562 * 17 16 15 44 44 H 1.07995 * 119.80649 * 179.97438 * 18 17 16 45 45 H 1.08006 * 119.97080 * 180.27830 * 19 18 17 46 46 H 0.97001 * 120.00128 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 2.0014 -0.5110 5 6 2.2255 1.7696 1.4429 6 8 2.8596 3.0503 1.4404 7 6 4.1471 3.0625 0.8204 8 6 4.0090 2.6504 -0.6475 9 6 3.3606 1.2646 -0.7218 10 1 4.0099 0.5320 -0.2422 11 7 3.1557 0.8940 -2.1242 12 6 2.3111 1.7252 -2.9857 13 6 3.7441 -0.2117 -2.6219 14 8 4.5164 -0.8513 -1.9343 15 6 3.4510 -0.6461 -4.0011 16 6 2.1380 -0.6342 -4.4774 17 6 1.8707 -1.0416 -5.7665 18 6 2.8986 -1.4643 -6.5941 19 6 4.2015 -1.4770 -6.1388 20 6 4.4890 -1.0750 -4.8413 21 8 5.7670 -1.0912 -4.3909 22 6 6.7271 -1.4019 -5.2848 23 1 6.4569 -1.6812 -6.2924 24 6 8.0622 -1.3630 -4.9104 25 7 8.9988 -1.6656 -5.7826 26 14 8.5296 -0.8806 -3.1674 27 1 8.7238 0.5900 -3.0960 28 1 9.7906 -1.5655 -2.7855 29 1 7.4459 -1.2825 -2.2350 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.8581 1.0518 1.9651 34 1 1.2629 1.8417 1.9492 35 1 4.8048 2.3617 1.3344 36 1 4.5689 4.0660 0.8780 37 1 4.9952 2.6164 -1.1107 38 1 3.3847 3.3733 -1.1727 39 1 1.2956 1.3291 -2.9901 40 1 2.3009 2.7473 -2.6072 41 1 2.7086 1.7175 -4.0006 42 1 1.3334 -0.3060 -3.8361 43 1 0.8550 -1.0315 -6.1336 44 1 2.6795 -1.7822 -7.6027 45 1 4.9979 -1.8035 -6.7913 46 1 9.9325 -1.6380 -5.5209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893834101.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:37 Heat of formation + Delta-G solvation = -108.653848 kcal Electronic energy + Delta-G solvation = -30579.020893 eV Core-core repulsion = 26435.562824 eV Total energy + Delta-G solvation = -4143.458070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.55115 -39.52980 -38.20021 -37.43975 -36.54896 -35.36837 -32.47304 -32.37772 -30.67434 -30.13510 -29.24203 -26.95121 -26.74118 -25.48617 -24.94517 -23.35192 -22.78210 -21.42417 -20.42983 -19.37306 -17.97971 -17.43452 -17.12803 -16.78069 -16.60281 -16.25503 -15.57873 -15.39331 -15.11214 -14.78782 -14.55799 -14.34691 -14.04768 -13.96111 -13.81678 -13.68340 -13.31714 -13.05664 -12.92220 -12.61163 -12.42280 -12.27391 -12.20249 -12.02975 -11.58968 -11.47455 -11.40721 -11.27568 -11.21745 -10.84069 -10.75048 -10.63272 -10.26880 -10.15074 -9.67851 -9.55136 -9.09014 -8.92168 -8.39403 -8.32923 -7.49683 -6.48565 -4.14288 1.66486 2.17689 3.16030 3.25455 3.28657 3.32801 3.40207 3.57786 3.78974 4.28698 4.39979 4.46781 4.62759 4.71174 4.74452 4.82540 4.93108 5.00971 5.04774 5.07375 5.12177 5.16349 5.25592 5.34892 5.41741 5.43548 5.48215 5.50930 5.61065 5.65141 5.67368 5.78951 5.83564 5.90973 6.04600 6.08316 6.37755 6.53789 6.73319 6.77542 6.88437 6.99919 7.08307 7.15191 7.47422 7.63923 7.76966 7.93880 8.75457 8.86687 9.48308 10.57316 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011452 B = 0.004620 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.396868 B = 6058.528887 C = 7827.010388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.049 3.951 4 H 0.071 0.929 5 C 0.043 3.957 6 O -0.378 6.378 7 C 0.061 3.939 8 C -0.164 4.164 9 C 0.144 3.856 10 H 0.110 0.890 11 N -0.612 5.612 12 C 0.081 3.919 13 C 0.579 3.421 14 O -0.520 6.520 15 C -0.217 4.217 16 C -0.042 4.042 17 C -0.218 4.218 18 C -0.054 4.054 19 C -0.225 4.225 20 C 0.199 3.801 21 O -0.185 6.185 22 C -0.394 4.394 23 H 0.109 0.891 24 C 0.072 3.928 25 N -0.871 5.871 26 Si 0.892 3.108 27 H -0.274 1.274 28 H -0.282 1.282 29 H -0.241 1.241 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.138 0.862 46 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.718 9.488 9.078 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.010 4.010 4 H 0.089 0.911 5 C -0.035 4.035 6 O -0.296 6.296 7 C -0.016 4.016 8 C -0.203 4.203 9 C 0.039 3.961 10 H 0.128 0.872 11 N -0.346 5.346 12 C -0.062 4.062 13 C 0.369 3.631 14 O -0.395 6.395 15 C -0.221 4.221 16 C -0.061 4.061 17 C -0.237 4.237 18 C -0.073 4.073 19 C -0.244 4.244 20 C 0.143 3.857 21 O -0.087 6.087 22 C -0.469 4.469 23 H 0.126 0.874 24 C -0.133 4.133 25 N -0.507 5.507 26 Si 0.717 3.283 27 H -0.200 1.200 28 H -0.207 1.207 29 H -0.164 1.164 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.136 0.864 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.156 0.844 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.874 9.121 9.698 20.718 hybrid contribution 0.141 0.116 0.185 0.259 sum -15.733 9.237 9.882 20.749 Atomic orbital electron populations 1.22814 0.81229 1.02899 0.99700 1.88045 1.19424 1.26203 1.94838 1.23187 0.95887 0.85726 0.96238 0.91092 1.23046 0.98772 0.85709 0.95951 1.87934 1.32472 1.30010 1.79215 1.22650 0.84837 1.02719 0.91441 1.22637 1.03018 0.96503 0.98149 1.21067 0.95078 0.97244 0.82672 0.87238 1.47589 1.50945 1.26376 1.09691 1.21843 0.94249 0.94372 0.95773 1.18209 0.78952 0.79306 0.86611 1.90778 1.34231 1.54362 1.60156 1.18738 0.93211 1.15680 0.94516 1.20851 0.93863 0.96237 0.95119 1.20547 0.98511 1.09725 0.94900 1.20951 0.92328 0.95441 0.98536 1.21260 0.97635 1.08873 0.96624 1.18963 0.84639 0.90953 0.91163 1.83649 1.11750 1.75141 1.38149 1.20859 0.84845 1.47117 0.94114 0.87367 1.24447 0.94002 0.95312 0.99575 1.69624 1.00977 1.45204 1.34903 0.86326 0.78954 0.78977 0.84084 1.20001 1.20728 1.16391 0.94025 0.89490 0.94229 0.91890 0.88642 0.92414 0.88078 0.89326 0.90387 0.93157 0.91678 0.90269 0.86407 0.87026 0.86859 0.84434 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.37 16 2 O -0.37 -4.86 10.28 -35.23 -0.36 -5.22 16 3 C 0.05 0.58 2.16 -26.60 -0.06 0.52 16 4 H 0.07 0.74 7.22 -51.93 -0.37 0.37 16 5 C 0.04 0.45 6.47 37.21 0.24 0.69 16 6 O -0.38 -4.17 10.77 -35.23 -0.38 -4.55 16 7 C 0.06 0.61 6.84 37.21 0.25 0.87 16 8 C -0.16 -1.92 5.46 -26.59 -0.15 -2.06 16 9 C 0.14 2.05 2.28 -67.75 -0.15 1.90 16 10 H 0.11 1.89 6.92 -51.92 -0.36 1.54 16 11 N -0.61 -9.77 2.70 -174.95 -0.47 -10.24 16 12 C 0.08 0.98 7.95 59.85 0.48 1.45 16 13 C 0.58 12.14 7.05 -12.47 -0.09 12.05 16 14 O -0.52 -13.18 15.64 -8.50 -0.13 -13.32 16 15 C -0.22 -4.47 4.91 -104.81 -0.51 -4.99 16 16 C -0.04 -0.69 7.94 -39.20 -0.31 -1.00 16 17 C -0.22 -3.38 10.02 -39.61 -0.40 -3.78 16 18 C -0.05 -0.92 10.03 -39.54 -0.40 -1.32 16 19 C -0.22 -4.74 9.16 -39.44 -0.36 -5.10 16 20 C 0.20 4.71 6.63 -38.60 -0.26 4.45 16 21 O -0.19 -5.09 7.47 -12.98 -0.10 -5.18 16 22 C -0.39 -11.24 9.95 30.91 0.31 -10.93 16 23 H 0.11 3.08 5.43 -52.49 -0.29 2.79 16 24 C 0.07 2.05 5.49 -17.51 -0.10 1.95 16 25 N -0.87 -25.22 13.96 55.48 0.77 -24.45 16 26 Si 0.89 22.72 28.62 -169.99 -4.86 17.86 16 27 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.24 -6.56 7.11 56.52 0.40 -6.16 16 30 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.29 7.96 -51.93 -0.41 -0.12 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.82 7.96 -51.93 -0.41 0.41 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.08 0.80 6.56 -51.93 -0.34 0.46 16 39 H 0.05 0.52 6.72 -51.93 -0.35 0.17 16 40 H 0.06 0.63 6.39 -51.93 -0.33 0.30 16 41 H 0.08 1.04 6.68 -51.93 -0.35 0.69 16 42 H 0.12 1.61 6.10 -52.49 -0.32 1.29 16 43 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 44 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 45 H 0.14 3.01 5.64 -52.48 -0.30 2.72 16 46 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 370.71 15.07 5.59 5.59 Total: -1.00 -34.02 370.71 -6.70 -40.72 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.34 Total: 2.73 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -0.41 Total: -3.92 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.30 Total: -34.69 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.97 Total: -28.28 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.86 Total: 17.86 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.02 -6.70 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893834101.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.937 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds