Wall clock time and date at job start Tue Mar 31 2020 18:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00209 * 2 1 4 4 H 1.09001 * 109.56783 * 330.15968 * 3 2 1 5 5 C 1.53093 * 109.52048 * 90.30894 * 3 2 1 6 6 O 1.42904 * 109.41398 * 177.51848 * 5 3 2 7 7 C 1.42910 * 114.09379 * 298.84277 * 6 5 3 8 8 C 1.53093 * 109.41399 * 61.16299 * 7 6 5 9 9 C 1.53169 * 109.52492 * 210.00052 * 3 2 1 10 10 H 1.09009 * 109.61570 * 303.02399 * 9 3 2 11 11 N 1.46498 * 109.54588 * 63.24505 * 9 3 2 12 12 C 1.46499 * 119.99945 * 59.55327 * 11 9 3 13 13 C 1.34776 * 119.99856 * 239.55702 * 11 9 3 14 14 O 1.21588 * 120.00431 * 355.01496 * 13 11 9 15 15 C 1.47540 * 119.99964 * 175.01482 * 13 11 9 16 16 C 1.39670 * 120.19644 * 316.50321 * 15 13 11 17 17 C 1.37817 * 119.91809 * 180.02562 * 16 15 13 18 18 C 1.38570 * 120.32942 * 0.02562 * 17 16 15 19 19 C 1.38026 * 120.39862 * 359.74121 * 18 17 16 20 20 C 1.38843 * 120.06967 * 0.51640 * 19 18 17 21 21 O 1.35517 * 120.16107 * 179.77001 * 20 19 18 22 22 C 1.34814 * 116.99995 * 5.34743 * 21 20 19 23 23 H 1.07996 * 120.00542 * 356.34977 * 22 21 20 24 24 C 1.38707 * 120.00210 * 176.34648 * 22 21 20 25 25 N 1.31514 * 120.00234 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99650 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47202 * 269.99895 * 26 24 22 28 28 H 1.48497 * 109.47132 * 149.99881 * 26 24 22 29 29 H 1.48504 * 109.47212 * 29.99471 * 26 24 22 30 30 H 1.09006 * 109.46931 * 59.99913 * 1 2 3 31 31 H 1.08997 * 109.46821 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47281 * 300.00055 * 1 2 3 33 33 H 1.09005 * 109.47718 * 57.53791 * 5 3 2 34 34 H 1.08998 * 109.49010 * 297.50582 * 5 3 2 35 35 H 1.08993 * 109.48212 * 301.17594 * 7 6 5 36 36 H 1.08998 * 109.48735 * 181.14366 * 7 6 5 37 37 H 1.09001 * 109.52127 * 182.48280 * 8 7 6 38 38 H 1.09001 * 109.57716 * 62.32533 * 8 7 6 39 39 H 1.09000 * 109.47390 * 265.82072 * 12 11 9 40 40 H 1.09004 * 109.46952 * 25.82520 * 12 11 9 41 41 H 1.09001 * 109.46914 * 145.81782 * 12 11 9 42 42 H 1.07998 * 120.03568 * 0.02562 * 16 15 13 43 43 H 1.08008 * 119.83655 * 180.02562 * 17 16 15 44 44 H 1.07995 * 119.80649 * 179.97438 * 18 17 16 45 45 H 1.08006 * 119.97080 * 180.27830 * 19 18 17 46 46 H 0.97001 * 120.00128 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 2.0014 -0.5110 5 6 2.2255 1.7696 1.4429 6 8 2.8596 3.0503 1.4404 7 6 4.1471 3.0625 0.8204 8 6 4.0090 2.6504 -0.6475 9 6 3.3606 1.2646 -0.7218 10 1 4.0099 0.5320 -0.2422 11 7 3.1557 0.8940 -2.1242 12 6 2.3111 1.7252 -2.9857 13 6 3.7441 -0.2117 -2.6219 14 8 4.5164 -0.8513 -1.9343 15 6 3.4510 -0.6461 -4.0011 16 6 2.1380 -0.6342 -4.4774 17 6 1.8707 -1.0416 -5.7665 18 6 2.8986 -1.4643 -6.5941 19 6 4.2015 -1.4770 -6.1388 20 6 4.4890 -1.0750 -4.8413 21 8 5.7670 -1.0912 -4.3909 22 6 6.7271 -1.4019 -5.2848 23 1 6.4569 -1.6812 -6.2924 24 6 8.0622 -1.3630 -4.9104 25 7 8.9988 -1.6656 -5.7826 26 14 8.5296 -0.8806 -3.1674 27 1 8.7238 0.5900 -3.0960 28 1 9.7906 -1.5655 -2.7855 29 1 7.4459 -1.2825 -2.2350 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.8581 1.0518 1.9651 34 1 1.2629 1.8417 1.9492 35 1 4.8048 2.3617 1.3344 36 1 4.5689 4.0660 0.8780 37 1 4.9952 2.6164 -1.1107 38 1 3.3847 3.3733 -1.1727 39 1 1.2956 1.3291 -2.9901 40 1 2.3009 2.7473 -2.6072 41 1 2.7086 1.7175 -4.0006 42 1 1.3334 -0.3060 -3.8361 43 1 0.8550 -1.0315 -6.1336 44 1 2.6795 -1.7822 -7.6027 45 1 4.9979 -1.8035 -6.7913 46 1 9.9325 -1.6380 -5.5209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893834101.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:36 Heat of formation + Delta-G solvation = -132.804866 kcal Electronic energy + Delta-G solvation = -30580.068160 eV Core-core repulsion = 26435.562824 eV Total energy + Delta-G solvation = -4144.505336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.81749 -40.91098 -39.69784 -38.31474 -38.19111 -36.70817 -34.54761 -33.55252 -31.75596 -31.30239 -30.85096 -28.01695 -27.50691 -27.38830 -26.19859 -24.23513 -24.14321 -23.04522 -21.57527 -20.71071 -19.89973 -19.02732 -18.17862 -18.10270 -17.58089 -17.42606 -16.80651 -16.70538 -16.25964 -16.11429 -15.87361 -15.74308 -15.59456 -15.32964 -15.29475 -14.92252 -14.46158 -14.36371 -14.18250 -14.12726 -13.93396 -13.84908 -13.38783 -13.06895 -12.95415 -12.78931 -12.60533 -12.50628 -12.39555 -12.29443 -12.17216 -12.11592 -11.58348 -11.54516 -11.12143 -10.99796 -10.86597 -10.33643 -9.87040 -9.63039 -9.16942 -8.60147 -6.29324 0.13866 0.62649 1.18979 1.22007 1.49667 1.79554 1.96743 2.22738 2.48827 2.70535 2.95159 2.98511 3.06408 3.52178 3.67956 3.75602 3.86051 3.90522 4.00684 4.04373 4.08865 4.23137 4.31941 4.41628 4.46033 4.50796 4.52584 4.55854 4.60354 4.62831 4.68234 4.77890 4.81128 4.83976 4.87640 4.90207 5.03180 5.08372 5.28738 5.47363 5.54784 5.63047 5.68052 5.82423 5.92333 6.14314 6.26451 6.35638 6.76104 7.23523 7.54104 8.50839 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011452 B = 0.004620 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.396868 B = 6058.528887 C = 7827.010388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.059 3.941 4 H 0.095 0.905 5 C 0.045 3.955 6 O -0.379 6.379 7 C 0.063 3.937 8 C -0.158 4.158 9 C 0.135 3.865 10 H 0.066 0.934 11 N -0.601 5.601 12 C 0.071 3.929 13 C 0.567 3.433 14 O -0.582 6.582 15 C -0.222 4.222 16 C -0.033 4.033 17 C -0.183 4.183 18 C -0.046 4.046 19 C -0.245 4.245 20 C 0.157 3.843 21 O -0.229 6.229 22 C -0.400 4.400 23 H 0.093 0.907 24 C 0.027 3.973 25 N -0.910 5.910 26 Si 0.948 3.052 27 H -0.265 1.265 28 H -0.262 1.262 29 H -0.277 1.277 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.121 0.879 35 H 0.049 0.951 36 H 0.127 0.873 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.158 0.842 43 H 0.167 0.833 44 H 0.152 0.848 45 H 0.116 0.884 46 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.638 11.710 9.240 26.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.321 6.321 3 C 0.000 4.000 4 H 0.113 0.887 5 C -0.033 4.033 6 O -0.297 6.297 7 C -0.014 4.014 8 C -0.196 4.196 9 C 0.031 3.969 10 H 0.084 0.916 11 N -0.333 5.333 12 C -0.070 4.070 13 C 0.358 3.642 14 O -0.462 6.462 15 C -0.227 4.227 16 C -0.051 4.051 17 C -0.201 4.201 18 C -0.064 4.064 19 C -0.264 4.264 20 C 0.105 3.895 21 O -0.134 6.134 22 C -0.476 4.476 23 H 0.111 0.889 24 C -0.173 4.173 25 N -0.550 5.550 26 Si 0.771 3.229 27 H -0.190 1.190 28 H -0.186 1.186 29 H -0.203 1.203 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.139 0.861 35 H 0.067 0.933 36 H 0.144 0.856 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.175 0.825 43 H 0.185 0.815 44 H 0.170 0.830 45 H 0.134 0.866 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.875 11.400 9.850 25.744 hybrid contribution 1.169 -0.541 0.084 1.290 sum -19.706 10.859 9.934 24.595 Atomic orbital electron populations 1.23034 0.79098 1.03705 1.01445 1.88022 1.21875 1.27083 1.95073 1.23104 0.94324 0.85863 0.96698 0.88701 1.23098 0.99680 0.85258 0.95271 1.87938 1.32533 1.30109 1.79129 1.22712 0.84723 1.03903 0.90101 1.22598 1.02142 0.95370 0.99537 1.21250 0.96633 0.97353 0.81681 0.91601 1.47628 1.49906 1.24916 1.10808 1.22167 0.94646 0.95548 0.94679 1.18482 0.78793 0.80296 0.86621 1.90749 1.37028 1.56793 1.61622 1.19127 0.94317 1.15075 0.94138 1.21324 0.92623 0.94909 0.96224 1.21215 1.00433 1.04893 0.93537 1.21419 0.90585 0.93824 1.00562 1.21312 0.99411 1.09990 0.95664 1.19650 0.84193 0.92527 0.93102 1.83630 1.13010 1.78501 1.38253 1.20838 0.85737 1.47072 0.93968 0.88931 1.24994 0.94144 0.96074 1.02115 1.69669 1.01321 1.48015 1.36043 0.85538 0.77959 0.79218 0.80147 1.19017 1.18596 1.20251 0.92467 0.89307 0.92214 0.93209 0.86091 0.93251 0.85554 0.91307 0.88070 0.90167 0.88624 0.91239 0.82498 0.81521 0.83018 0.86643 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.82 113.37 1.23 1.57 16 2 O -0.40 -9.87 10.28 -148.98 -1.53 -11.40 16 3 C 0.06 1.25 2.16 30.68 0.07 1.32 16 4 H 0.10 1.54 7.22 -2.39 -0.02 1.52 16 5 C 0.04 0.84 6.47 72.01 0.47 1.30 16 6 O -0.38 -7.39 10.77 -148.98 -1.60 -8.99 16 7 C 0.06 1.18 6.84 72.01 0.49 1.67 16 8 C -0.16 -3.52 5.46 30.69 0.17 -3.35 16 9 C 0.13 3.81 2.28 45.11 0.10 3.91 16 10 H 0.07 2.45 6.92 -2.38 -0.02 2.44 16 11 N -0.60 -18.62 2.70 -825.68 -2.23 -20.85 16 12 C 0.07 1.44 7.95 127.77 1.02 2.46 16 13 C 0.57 24.42 7.05 86.70 0.61 25.03 16 14 O -0.58 -31.62 15.64 9.19 0.14 -31.48 16 15 C -0.22 -9.11 4.91 -19.99 -0.10 -9.20 16 16 C -0.03 -0.94 7.94 22.52 0.18 -0.76 16 17 C -0.18 -4.60 10.02 22.25 0.22 -4.37 16 18 C -0.05 -1.41 10.03 22.30 0.22 -1.18 16 19 C -0.24 -10.49 9.16 22.36 0.20 -10.28 16 20 C 0.16 7.74 6.63 22.91 0.15 7.89 16 21 O -0.23 -13.49 7.47 -6.84 -0.05 -13.54 16 22 C -0.40 -24.56 9.95 67.93 0.68 -23.88 16 23 H 0.09 5.74 5.43 -2.91 -0.02 5.72 16 24 C 0.03 1.63 5.49 84.85 0.47 2.10 16 25 N -0.91 -55.63 13.96 21.62 0.30 -55.33 16 26 Si 0.95 50.31 28.62 68.60 1.96 52.28 16 27 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16 28 H -0.26 -12.76 7.11 99.48 0.71 -12.06 16 29 H -0.28 -16.27 7.11 99.48 0.71 -15.57 16 30 H 0.06 0.66 8.09 -2.38 -0.02 0.64 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 0.64 7.96 -2.39 -0.02 0.62 16 33 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.12 1.66 7.96 -2.39 -0.02 1.64 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.10 1.76 6.56 -2.39 -0.02 1.74 16 39 H 0.08 1.19 6.72 -2.39 -0.02 1.18 16 40 H 0.10 1.40 6.39 -2.39 -0.02 1.38 16 41 H 0.07 1.59 6.68 -2.39 -0.02 1.58 16 42 H 0.16 3.32 6.10 -2.91 -0.02 3.30 16 43 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16 44 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 45 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 46 H 0.29 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -84.21 370.71 4.18 -80.04 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 1.00 Total: 15.06 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 6.18 Total: -5.78 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -1.92 Total: -76.18 kcal Atomic # 8 Polarization: -62.37 SS G_CDS: -3.04 Total: -65.42 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 1.96 Total: 52.28 kcal Total: -84.21 4.18 -80.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893834101.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.766 kcal (2) G-P(sol) polarization free energy of solvation -84.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds