Wall clock time and date at job start Tue Mar 31 2020 18:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34943 * 126.03956 * 2 1 4 4 C 1.35314 * 107.74871 * 180.14234 * 3 2 1 5 5 C 1.50699 * 126.04287 * 179.86999 * 4 3 2 6 6 C 1.52449 * 109.28878 * 239.71973 * 5 4 3 7 7 C 1.53701 * 108.99129 * 185.89567 * 6 5 4 8 8 H 1.08999 * 112.58808 * 188.08583 * 7 6 5 9 9 C 1.54610 * 107.83038 * 312.38527 * 7 6 5 10 10 C 1.54318 * 104.74894 * 88.65900 * 9 7 6 11 11 C 1.54996 * 104.71358 * 359.83088 * 10 9 7 12 12 H 1.08997 * 112.26074 * 146.97584 * 11 10 9 13 13 C 1.53141 * 109.43492 * 119.71075 * 5 4 3 14 14 N 1.48296 * 104.07119 * 25.40125 * 11 10 9 15 15 C 1.34777 * 128.21072 * 138.36822 * 14 11 10 16 16 O 1.21283 * 119.99750 * 179.67597 * 15 14 11 17 17 C 1.50702 * 119.99928 * 359.95690 * 15 14 11 18 18 S 1.80999 * 109.46903 * 179.72354 * 17 15 14 19 19 C 1.76200 * 99.99730 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00351 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00095 * 179.97438 * 19 18 17 22 22 N 1.31630 * 120.00506 * 180.02562 * 21 19 18 23 23 Si 1.86809 * 119.99909 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47104 * 90.00095 * 23 21 19 25 25 H 1.48502 * 109.46943 * 210.00235 * 23 21 19 26 26 H 1.48497 * 109.46910 * 330.00035 * 23 21 19 27 27 C 1.39864 * 107.91884 * 359.60589 * 4 3 2 28 28 N 1.30838 * 108.20242 * 0.24389 * 27 4 3 29 29 H 1.09002 * 109.47834 * 270.31413 * 1 2 3 30 30 H 1.09001 * 109.46897 * 30.32214 * 1 2 3 31 31 H 1.09005 * 109.46970 * 150.31573 * 1 2 3 32 32 H 1.08003 * 126.12372 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.43152 * 359.80539 * 5 4 3 34 34 H 1.09001 * 109.39065 * 66.11652 * 6 5 4 35 35 H 1.09004 * 109.63971 * 305.82799 * 6 5 4 36 36 H 1.08996 * 110.38060 * 207.48037 * 9 7 6 37 37 H 1.09004 * 110.38153 * 329.84481 * 9 7 6 38 38 H 1.08999 * 110.37660 * 118.82283 * 10 9 7 39 39 H 1.08994 * 110.38045 * 241.17998 * 10 9 7 40 40 H 1.08997 * 109.57374 * 54.14597 * 13 5 4 41 41 H 1.08997 * 109.67429 * 293.83638 * 13 5 4 42 42 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 43 43 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 44 44 H 0.97002 * 120.00159 * 180.02562 * 22 21 19 45 45 H 1.08003 * 125.90298 * 180.26091 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0032 5 6 4.7680 1.5452 -0.0071 6 6 5.5968 1.2485 -1.2518 7 6 6.9133 2.0380 -1.1760 8 1 7.4897 1.9805 -2.0993 9 6 6.5698 3.4956 -0.7918 10 6 6.5757 3.5070 0.7514 11 6 6.9189 2.0503 1.1545 12 1 7.4997 2.0027 2.0755 13 6 5.6027 1.2616 1.2451 14 7 7.6699 1.5214 -0.0097 15 6 8.7747 0.7495 -0.0083 16 8 9.2676 0.3942 -1.0580 17 6 9.3940 0.3227 1.2976 18 16 10.8476 -0.7044 0.9688 19 6 11.3574 -1.0505 2.6196 20 1 10.7984 -0.6504 3.4525 21 6 12.4768 -1.8382 2.8495 22 7 12.8573 -2.0972 4.0827 23 14 13.4425 -2.5321 1.4088 24 1 14.5055 -1.5720 1.0171 25 1 14.0621 -3.8226 1.8039 26 1 12.5276 -2.7534 0.2603 27 6 3.5346 -0.7321 0.0039 28 7 2.2891 -1.1327 0.0059 29 1 -0.3635 0.0056 1.0276 30 1 -0.3633 0.8871 -0.5188 31 1 -0.3633 -0.8928 -0.5089 32 1 1.9281 2.1193 -0.0004 33 1 4.4632 2.5917 -0.0105 34 1 5.0397 1.5518 -2.1383 35 1 5.8133 0.1813 -1.3020 36 1 7.3257 4.1785 -1.1794 37 1 5.5836 3.7654 -1.1696 38 1 7.3345 4.1957 1.1229 39 1 5.5925 3.7825 1.1327 40 1 5.8196 0.1952 1.3056 41 1 5.0510 1.5729 2.1321 42 1 9.6930 1.2051 1.8635 43 1 8.6675 -0.2497 1.8743 44 1 13.6399 -2.6475 4.2433 45 1 4.4053 -1.3711 0.0075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893957549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:08 Heat of formation + Delta-G solvation = 47.672785 kcal Electronic energy + Delta-G solvation = -26650.710357 eV Core-core repulsion = 22989.076741 eV Total energy + Delta-G solvation = -3661.633616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69862 -40.69380 -37.98086 -34.41668 -32.74559 -32.40806 -31.88101 -31.27709 -29.72055 -28.88138 -26.83678 -25.58799 -24.31582 -24.17617 -21.69492 -21.20953 -20.59209 -20.11818 -18.38076 -17.70137 -17.19931 -16.63724 -15.98530 -15.70766 -15.06066 -14.90541 -14.76234 -14.64506 -14.16099 -13.76654 -13.55603 -13.53929 -13.44836 -13.30386 -12.96080 -12.80543 -12.77933 -12.66341 -12.61450 -12.13012 -11.84037 -11.49652 -11.27414 -11.22717 -10.98025 -10.84594 -10.69060 -10.54926 -10.50811 -10.42687 -9.82393 -9.64154 -9.41325 -8.97329 -8.56075 -8.51752 -8.45345 -6.88045 -6.25936 -3.97197 1.65383 2.27977 2.60121 2.73503 3.02122 3.23661 3.35882 3.53657 3.63694 4.18391 4.32132 4.36441 4.46430 4.53399 4.68087 4.75407 4.78116 4.81438 4.95235 4.98122 4.99989 5.03093 5.06935 5.13224 5.17542 5.20369 5.30351 5.45829 5.50940 5.54556 5.70231 5.73158 5.79567 5.79874 5.89071 5.93341 5.99317 6.01287 6.05527 6.09722 6.33016 6.45993 6.47463 6.75393 7.48515 7.77658 7.97188 8.44684 8.53647 9.20457 10.83287 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.002805 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.271066 B = 9978.767991 C =10794.598051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.381 5.381 3 C 0.052 3.948 4 C -0.224 4.224 5 C -0.005 4.005 6 C -0.117 4.117 7 C 0.134 3.866 8 H 0.099 0.901 9 C -0.130 4.130 10 C -0.130 4.130 11 C 0.128 3.872 12 H 0.101 0.899 13 C -0.120 4.120 14 N -0.620 5.620 15 C 0.554 3.446 16 O -0.521 6.521 17 C -0.117 4.117 18 S -0.143 6.143 19 C -0.519 4.519 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.881 5.881 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.235 1.235 27 C 0.058 3.942 28 N -0.298 5.298 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.171 0.829 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.270 0.730 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.848 13.004 -7.898 29.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.164 5.164 3 C -0.094 4.094 4 C -0.236 4.236 5 C -0.024 4.024 6 C -0.156 4.156 7 C 0.031 3.969 8 H 0.117 0.883 9 C -0.169 4.169 10 C -0.168 4.168 11 C 0.023 3.977 12 H 0.119 0.881 13 C -0.159 4.159 14 N -0.356 5.356 15 C 0.342 3.658 16 O -0.396 6.396 17 C -0.267 4.267 18 S 0.083 5.917 19 C -0.667 4.667 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.518 5.518 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.128 4.128 28 N -0.119 5.119 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.188 0.812 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -25.847 11.283 -9.327 29.704 hybrid contribution 0.414 0.718 1.000 1.299 sum -25.432 12.001 -8.327 29.329 Atomic orbital electron populations 1.21817 0.74447 1.04345 1.03251 1.48451 1.06530 1.03964 1.57410 1.22292 0.90842 0.93231 1.03025 1.20085 0.94079 0.93966 1.15465 1.19435 0.90637 0.97592 0.94758 1.21981 0.94852 1.01238 0.97533 1.22169 0.91580 0.92248 0.90934 0.88286 1.22614 1.02031 0.96316 0.95918 1.22676 1.02199 0.96122 0.95832 1.22391 0.92115 0.92708 0.90441 0.88105 1.22132 0.94846 1.01223 0.97661 1.49215 1.26846 1.51680 1.07865 1.19904 0.78100 0.76635 0.91130 1.90701 1.61048 1.54285 1.33522 1.23245 1.02328 1.03939 0.97213 1.84785 1.29988 1.63331 1.13556 1.22309 1.16457 1.37776 0.90148 0.89418 1.24709 0.96056 0.94636 0.95916 1.69939 1.25510 1.37163 1.19168 0.86740 0.81901 0.79377 0.83875 1.19232 1.19984 1.15884 1.23815 0.95026 0.94835 0.99122 1.77400 1.01821 1.08126 1.24559 0.90879 0.89633 0.89399 0.81200 0.90159 0.91185 0.91162 0.91232 0.90350 0.91047 0.90282 0.91045 0.90866 0.88749 0.88638 0.91978 0.80206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.49 11.47 59.85 0.69 1.17 16 2 N -0.38 -3.43 4.01 -68.16 -0.27 -3.70 16 3 C 0.05 0.40 11.38 -17.23 -0.20 0.21 16 4 C -0.22 -2.07 4.79 -105.06 -0.50 -2.57 16 5 C 0.00 -0.04 2.18 -91.98 -0.20 -0.24 16 6 C -0.12 -1.14 4.79 -26.65 -0.13 -1.27 16 7 C 0.13 1.50 4.12 -65.73 -0.27 1.23 16 8 H 0.10 1.26 7.93 -51.93 -0.41 0.85 16 9 C -0.13 -1.06 5.98 -25.19 -0.15 -1.21 16 10 C -0.13 -1.02 6.00 -24.99 -0.15 -1.17 16 11 C 0.13 1.32 4.01 -65.52 -0.26 1.06 16 12 H 0.10 1.07 7.43 -51.93 -0.39 0.68 16 13 C -0.12 -1.12 4.85 -26.29 -0.13 -1.25 16 14 N -0.62 -8.48 2.76 -152.96 -0.42 -8.90 16 15 C 0.55 10.29 7.94 -10.98 -0.09 10.20 16 16 O -0.52 -11.64 16.18 5.55 0.09 -11.55 16 17 C -0.12 -2.33 5.15 36.01 0.19 -2.15 16 18 S -0.14 -3.69 18.55 -107.50 -1.99 -5.68 16 19 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 20 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 21 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 22 N -0.88 -26.80 13.97 55.49 0.78 -26.03 16 23 Si 0.86 22.05 27.74 -169.99 -4.72 17.33 16 24 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.23 -6.05 6.74 56.52 0.38 -5.67 16 27 C 0.06 0.65 11.20 -17.37 -0.19 0.46 16 28 N -0.30 -3.61 12.58 30.62 0.39 -3.22 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.17 0.73 8.06 -52.48 -0.42 0.30 16 33 H 0.08 0.53 5.49 -51.93 -0.29 0.24 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.84 7.84 -51.93 -0.41 0.43 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.48 7.03 -51.93 -0.37 0.11 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.47 7.05 -51.93 -0.37 0.10 16 40 H 0.07 0.80 7.86 -51.93 -0.41 0.39 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 1.77 8.06 -51.91 -0.42 1.35 16 43 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 44 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.18 1.92 8.06 -52.48 -0.42 1.50 16 LS Contribution 372.44 15.07 5.61 5.61 Total: -1.00 -36.50 372.44 -8.58 -45.08 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.85 Total: -1.33 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -1.18 Total: -7.61 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.47 Total: -41.85 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.72 Total: 17.33 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.50 -8.58 -45.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893957549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.752 kcal (2) G-P(sol) polarization free energy of solvation -36.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds