Wall clock time and date at job start Tue Mar 31 2020 18:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34943 * 126.03956 * 2 1 4 4 C 1.35314 * 107.74871 * 180.14234 * 3 2 1 5 5 C 1.50699 * 126.04287 * 179.86999 * 4 3 2 6 6 C 1.52449 * 109.28878 * 239.71973 * 5 4 3 7 7 C 1.53701 * 108.99129 * 185.89567 * 6 5 4 8 8 H 1.08999 * 112.58808 * 188.08583 * 7 6 5 9 9 C 1.54610 * 107.83038 * 312.38527 * 7 6 5 10 10 C 1.54318 * 104.74894 * 88.65900 * 9 7 6 11 11 C 1.54996 * 104.71358 * 359.83088 * 10 9 7 12 12 H 1.08997 * 112.26074 * 146.97584 * 11 10 9 13 13 C 1.53141 * 109.43492 * 119.71075 * 5 4 3 14 14 N 1.48296 * 104.07119 * 25.40125 * 11 10 9 15 15 C 1.34777 * 128.21072 * 138.36822 * 14 11 10 16 16 O 1.21283 * 119.99750 * 179.67597 * 15 14 11 17 17 C 1.50702 * 119.99928 * 359.95690 * 15 14 11 18 18 S 1.80999 * 109.46903 * 179.72354 * 17 15 14 19 19 C 1.76200 * 99.99730 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00351 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00095 * 179.97438 * 19 18 17 22 22 N 1.31630 * 120.00506 * 180.02562 * 21 19 18 23 23 Si 1.86809 * 119.99909 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47104 * 90.00095 * 23 21 19 25 25 H 1.48502 * 109.46943 * 210.00235 * 23 21 19 26 26 H 1.48497 * 109.46910 * 330.00035 * 23 21 19 27 27 C 1.39864 * 107.91884 * 359.60589 * 4 3 2 28 28 N 1.30838 * 108.20242 * 0.24389 * 27 4 3 29 29 H 1.09002 * 109.47834 * 270.31413 * 1 2 3 30 30 H 1.09001 * 109.46897 * 30.32214 * 1 2 3 31 31 H 1.09005 * 109.46970 * 150.31573 * 1 2 3 32 32 H 1.08003 * 126.12372 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.43152 * 359.80539 * 5 4 3 34 34 H 1.09001 * 109.39065 * 66.11652 * 6 5 4 35 35 H 1.09004 * 109.63971 * 305.82799 * 6 5 4 36 36 H 1.08996 * 110.38060 * 207.48037 * 9 7 6 37 37 H 1.09004 * 110.38153 * 329.84481 * 9 7 6 38 38 H 1.08999 * 110.37660 * 118.82283 * 10 9 7 39 39 H 1.08994 * 110.38045 * 241.17998 * 10 9 7 40 40 H 1.08997 * 109.57374 * 54.14597 * 13 5 4 41 41 H 1.08997 * 109.67429 * 293.83638 * 13 5 4 42 42 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 43 43 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 44 44 H 0.97002 * 120.00159 * 180.02562 * 22 21 19 45 45 H 1.08003 * 125.90298 * 180.26091 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0032 5 6 4.7680 1.5452 -0.0071 6 6 5.5968 1.2485 -1.2518 7 6 6.9133 2.0380 -1.1760 8 1 7.4897 1.9805 -2.0993 9 6 6.5698 3.4956 -0.7918 10 6 6.5757 3.5070 0.7514 11 6 6.9189 2.0503 1.1545 12 1 7.4997 2.0027 2.0755 13 6 5.6027 1.2616 1.2451 14 7 7.6699 1.5214 -0.0097 15 6 8.7747 0.7495 -0.0083 16 8 9.2676 0.3942 -1.0580 17 6 9.3940 0.3227 1.2976 18 16 10.8476 -0.7044 0.9688 19 6 11.3574 -1.0505 2.6196 20 1 10.7984 -0.6504 3.4525 21 6 12.4768 -1.8382 2.8495 22 7 12.8573 -2.0972 4.0827 23 14 13.4425 -2.5321 1.4088 24 1 14.5055 -1.5720 1.0171 25 1 14.0621 -3.8226 1.8039 26 1 12.5276 -2.7534 0.2603 27 6 3.5346 -0.7321 0.0039 28 7 2.2891 -1.1327 0.0059 29 1 -0.3635 0.0056 1.0276 30 1 -0.3633 0.8871 -0.5188 31 1 -0.3633 -0.8928 -0.5089 32 1 1.9281 2.1193 -0.0004 33 1 4.4632 2.5917 -0.0105 34 1 5.0397 1.5518 -2.1383 35 1 5.8133 0.1813 -1.3020 36 1 7.3257 4.1785 -1.1794 37 1 5.5836 3.7654 -1.1696 38 1 7.3345 4.1957 1.1229 39 1 5.5925 3.7825 1.1327 40 1 5.8196 0.1952 1.3056 41 1 5.0510 1.5729 2.1321 42 1 9.6930 1.2051 1.8635 43 1 8.6675 -0.2497 1.8743 44 1 13.6399 -2.6475 4.2433 45 1 4.4053 -1.3711 0.0075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893957549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:07 Heat of formation + Delta-G solvation = 24.069368 kcal Electronic energy + Delta-G solvation = -26651.733878 eV Core-core repulsion = 22989.076741 eV Total energy + Delta-G solvation = -3662.657137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.44442 -41.58035 -39.35829 -35.16393 -34.68729 -33.55916 -32.81687 -32.15919 -30.47159 -30.22663 -27.87538 -27.40060 -25.07843 -25.04496 -22.63276 -21.91588 -21.41658 -20.94720 -19.96593 -19.02920 -18.33486 -17.62435 -17.14582 -16.81204 -16.43790 -16.20628 -16.14711 -15.74688 -15.26301 -14.93769 -14.75259 -14.60662 -14.39728 -14.04123 -14.03228 -13.68078 -13.67501 -13.58644 -13.34305 -13.28394 -13.24585 -13.02803 -12.71611 -12.51936 -12.36227 -11.96813 -11.86148 -11.61902 -11.44171 -11.22755 -11.18452 -11.15967 -10.89402 -10.55283 -10.32683 -9.65287 -9.22208 -9.01972 -8.52896 -6.24056 0.95393 1.02216 1.29768 1.44465 1.52400 1.55810 1.76732 1.86114 2.07958 2.24053 2.67429 2.85120 3.45402 3.60558 3.65247 3.93374 3.99443 4.06659 4.14794 4.18962 4.21816 4.31111 4.35187 4.39265 4.40762 4.45087 4.47612 4.55084 4.69862 4.72803 4.77851 4.89193 4.96357 5.07725 5.10770 5.15474 5.21536 5.24605 5.26823 5.35767 5.56490 5.62790 5.69587 5.73127 6.09640 6.24829 6.53749 6.78408 6.92165 7.12020 8.59563 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.002805 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.271066 B = 9978.767991 C =10794.598051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.383 5.383 3 C 0.069 3.931 4 C -0.239 4.239 5 C 0.009 3.991 6 C -0.111 4.111 7 C 0.124 3.876 8 H 0.076 0.924 9 C -0.121 4.121 10 C -0.121 4.121 11 C 0.116 3.884 12 H 0.096 0.904 13 C -0.116 4.116 14 N -0.612 5.612 15 C 0.552 3.448 16 O -0.570 6.570 17 C -0.100 4.100 18 S -0.176 6.176 19 C -0.527 4.527 20 H 0.062 0.938 21 C 0.046 3.954 22 N -0.916 5.916 23 Si 0.914 3.086 24 H -0.261 1.261 25 H -0.258 1.258 26 H -0.239 1.239 27 C 0.037 3.963 28 N -0.345 5.345 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.217 0.783 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.036 0.964 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.115 0.885 40 H 0.041 0.959 41 H 0.094 0.906 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.277 0.723 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.735 16.081 -8.498 34.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.165 5.165 3 C -0.077 4.077 4 C -0.250 4.250 5 C -0.011 4.011 6 C -0.149 4.149 7 C 0.021 3.979 8 H 0.094 0.906 9 C -0.159 4.159 10 C -0.159 4.159 11 C 0.013 3.987 12 H 0.114 0.886 13 C -0.155 4.155 14 N -0.346 5.346 15 C 0.340 3.660 16 O -0.449 6.449 17 C -0.251 4.251 18 S 0.051 5.949 19 C -0.675 4.675 20 H 0.080 0.920 21 C -0.159 4.159 22 N -0.554 5.554 23 Si 0.736 3.264 24 H -0.185 1.185 25 H -0.182 1.182 26 H -0.163 1.163 27 C -0.148 4.148 28 N -0.167 5.167 29 H 0.102 0.898 30 H 0.138 0.862 31 H 0.101 0.899 32 H 0.234 0.766 33 H 0.135 0.865 34 H 0.107 0.893 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.132 0.868 38 H 0.091 0.909 39 H 0.133 0.867 40 H 0.060 0.940 41 H 0.113 0.887 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.087 0.913 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -28.790 14.385 -9.900 33.672 hybrid contribution 1.095 -0.166 1.229 1.655 sum -27.695 14.219 -8.671 32.317 Atomic orbital electron populations 1.22169 0.72216 1.05831 1.04449 1.48822 1.07878 1.03547 1.56273 1.22964 0.89891 0.94655 1.00216 1.20162 0.95269 0.92842 1.16775 1.19384 0.89639 0.99247 0.92800 1.21923 0.94490 0.98959 0.99540 1.22450 0.91363 0.94918 0.89139 0.90560 1.22625 1.03902 0.93210 0.96118 1.22703 1.04230 0.93513 0.95454 1.22757 0.91989 0.94904 0.89042 0.88624 1.22109 0.94614 0.99308 0.99425 1.49221 1.25183 1.49499 1.10716 1.19547 0.79433 0.77461 0.89579 1.90671 1.63076 1.56702 1.34475 1.23177 0.99833 1.03310 0.98768 1.84704 1.33363 1.65247 1.11583 1.22426 1.16391 1.37594 0.91076 0.92023 1.25548 0.97022 0.94959 0.98375 1.70012 1.26390 1.38063 1.20921 0.85879 0.80504 0.79457 0.80610 1.18529 1.18173 1.16303 1.23817 0.94675 0.96303 0.99996 1.77319 1.02549 1.10417 1.26431 0.89816 0.86176 0.89936 0.76625 0.86530 0.89285 0.94545 0.91393 0.86824 0.90901 0.86718 0.94004 0.88748 0.87415 0.87802 0.91316 0.81763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 11.47 127.77 1.47 2.07 16 2 N -0.38 -5.96 4.01 -369.56 -1.48 -7.44 16 3 C 0.07 0.79 11.38 83.54 0.95 1.74 16 4 C -0.24 -3.85 4.79 -20.15 -0.10 -3.94 16 5 C 0.01 0.11 2.18 -11.68 -0.03 0.09 16 6 C -0.11 -1.99 4.79 30.65 0.15 -1.85 16 7 C 0.12 2.61 4.12 45.43 0.19 2.80 16 8 H 0.08 1.96 7.93 -2.39 -0.02 1.94 16 9 C -0.12 -1.47 5.98 31.59 0.19 -1.28 16 10 C -0.12 -1.37 6.00 31.72 0.19 -1.18 16 11 C 0.12 2.16 4.01 45.56 0.18 2.35 16 12 H 0.10 1.89 7.43 -2.39 -0.02 1.87 16 13 C -0.12 -1.93 4.85 30.88 0.15 -1.78 16 14 N -0.61 -16.58 2.76 -756.25 -2.08 -18.66 16 15 C 0.55 21.09 7.94 87.66 0.70 21.79 16 16 O -0.57 -26.54 16.18 -3.04 -0.05 -26.59 16 17 C -0.10 -4.10 5.15 71.24 0.37 -3.74 16 18 S -0.18 -9.30 18.55 -56.49 -1.05 -10.35 16 19 C -0.53 -31.58 10.04 67.95 0.68 -30.90 16 20 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 21 C 0.05 2.79 5.50 84.86 0.47 3.25 16 22 N -0.92 -56.70 13.97 21.65 0.30 -56.40 16 23 Si 0.91 46.16 27.74 68.60 1.90 48.07 16 24 H -0.26 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.24 -12.16 6.74 99.48 0.67 -11.49 16 27 C 0.04 0.85 11.20 85.23 0.95 1.80 16 28 N -0.34 -8.33 12.58 -57.02 -0.72 -9.05 16 29 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.08 0.63 8.14 -2.38 -0.02 0.62 16 32 H 0.22 0.33 8.06 -2.91 -0.02 0.31 16 33 H 0.12 0.76 5.49 -2.39 -0.01 0.74 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.04 0.90 7.84 -2.38 -0.02 0.88 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.11 0.67 7.03 -2.38 -0.02 0.65 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.11 0.58 7.05 -2.39 -0.02 0.57 16 40 H 0.04 0.95 7.86 -2.39 -0.02 0.93 16 41 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.11 4.10 8.06 -2.39 -0.02 4.08 16 43 H 0.10 4.05 8.14 -2.40 -0.02 4.03 16 44 H 0.28 15.85 8.31 -92.71 -0.77 15.07 16 45 H 0.17 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -84.48 372.44 4.28 -80.20 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 0.95 Total: 9.01 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 6.51 Total: -8.79 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -3.98 Total: -91.55 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.05 Total: -26.59 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.90 Total: 48.07 kcal Atomic # 16 Polarization: -9.30 SS G_CDS: -1.05 Total: -10.35 kcal Total: -84.48 4.28 -80.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893957549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.274 kcal (2) G-P(sol) polarization free energy of solvation -84.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds