Wall clock time and date at job start Tue Mar 31 2020 19:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34225 * 117.00003 * 2 1 4 4 O 1.20825 * 120.00196 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00259 * 179.97438 * 3 2 1 6 6 O 1.42899 * 109.47417 * 180.02562 * 5 3 2 7 7 C 1.35899 * 117.00043 * 179.97438 * 6 5 3 8 8 C 1.38754 * 120.05359 * 0.25147 * 7 6 5 9 9 C 1.38129 * 119.93909 * 180.27266 * 8 7 6 10 10 C 1.38284 * 120.05685 * 359.72836 * 9 8 7 11 11 C 1.38242 * 120.11266 * 0.02562 * 10 9 8 12 12 C 1.38166 * 120.05731 * 359.97438 * 11 10 9 13 13 C 1.50692 * 120.03021 * 180.02562 * 12 11 10 14 14 N 1.46895 * 109.47470 * 104.14436 * 13 12 11 15 15 C 1.47443 * 110.99948 * 284.41865 * 14 13 12 16 16 C 1.54313 * 107.23658 * 236.73915 * 15 14 13 17 17 C 1.55135 * 103.01908 * 337.71844 * 16 15 14 18 18 O 1.42895 * 110.98864 * 277.55850 * 17 16 15 19 19 C 1.50705 * 110.98929 * 153.74206 * 17 16 15 20 20 H 1.07996 * 119.99758 * 238.48111 * 19 17 16 21 21 C 1.37878 * 120.00242 * 58.48946 * 19 17 16 22 22 N 1.31519 * 119.99413 * 355.14235 * 21 19 17 23 23 Si 1.86796 * 120.00124 * 175.13759 * 21 19 17 24 24 H 1.48505 * 109.47109 * 94.99462 * 23 21 19 25 25 H 1.48502 * 109.47166 * 214.98972 * 23 21 19 26 26 H 1.48493 * 109.47204 * 334.99290 * 23 21 19 27 27 C 1.47846 * 111.00576 * 163.57706 * 14 13 12 28 28 H 1.09000 * 109.46937 * 60.00110 * 1 2 3 29 29 H 1.08996 * 109.46895 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47259 * 299.99745 * 1 2 3 31 31 H 1.09003 * 109.46923 * 59.99728 * 5 3 2 32 32 H 1.09005 * 109.46831 * 300.00665 * 5 3 2 33 33 H 1.08003 * 120.03296 * 0.02721 * 8 7 6 34 34 H 1.07999 * 119.96706 * 179.74499 * 9 8 7 35 35 H 1.08003 * 119.94094 * 180.02562 * 10 9 8 36 36 H 1.07999 * 119.97161 * 180.02562 * 11 10 9 37 37 H 1.08995 * 109.47120 * 344.14097 * 13 12 11 38 38 H 1.09000 * 109.47075 * 224.14376 * 13 12 11 39 39 H 1.09005 * 109.88526 * 117.33229 * 15 14 13 40 40 H 1.09003 * 109.88617 * 356.15152 * 15 14 13 41 41 H 1.09006 * 110.70381 * 96.10082 * 16 15 14 42 42 H 1.09000 * 110.70974 * 219.33290 * 16 15 14 43 43 H 0.96702 * 114.00690 * 298.54279 * 18 17 16 44 44 H 0.97004 * 119.99342 * 180.02562 * 22 21 19 45 45 H 1.08994 * 110.37695 * 265.19399 * 27 14 13 46 46 H 1.09000 * 110.37088 * 27.42132 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 8 3.9716 2.6452 0.0011 7 6 5.3077 2.8936 0.0022 8 6 6.2103 1.8398 -0.0025 9 6 7.5678 2.0949 0.0043 10 6 8.0275 3.3991 0.0101 11 6 7.1302 4.4507 0.0097 12 6 5.7713 4.2009 0.0028 13 6 4.7937 5.3477 0.0017 14 7 4.2245 5.5047 -1.3433 15 6 5.1939 6.1370 -2.2568 16 6 4.5241 7.4042 -2.8285 17 6 3.0113 7.1120 -2.6472 18 8 2.5153 6.3007 -3.7138 19 6 2.2240 8.3920 -2.5342 20 1 1.6261 8.5824 -1.6552 21 6 2.2669 9.3200 -3.5530 22 7 3.0679 9.1332 -4.5793 23 14 1.1872 10.8424 -3.4758 24 1 1.9610 11.9690 -2.8949 25 1 0.7410 11.2028 -4.8455 26 1 0.0016 10.5659 -2.6256 27 6 3.0012 6.3342 -1.3076 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9565 0.7805 -0.8892 32 1 3.9557 0.7808 0.8908 33 1 5.8519 0.8210 -0.0075 34 1 8.2708 1.2750 0.0049 35 1 9.0893 3.5964 0.0151 36 1 7.4917 5.4684 0.0138 37 1 5.3090 6.2647 0.2875 38 1 3.9936 5.1438 0.7133 39 1 5.4419 5.4511 -3.0668 40 1 6.0962 6.4094 -1.7092 41 1 4.8174 8.2858 -2.2584 42 1 4.7691 7.5271 -3.8835 43 1 2.5913 6.7093 -4.5870 44 1 3.0983 9.7863 -5.2959 45 1 2.1157 5.7020 -1.2425 46 1 3.0358 7.0253 -0.4654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895109318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:08 Heat of formation + Delta-G solvation = -126.691160 kcal Electronic energy + Delta-G solvation = -29603.571825 eV Core-core repulsion = 25459.331599 eV Total energy + Delta-G solvation = -4144.240226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.78817 -40.02494 -38.22943 -37.41547 -36.41567 -34.73862 -32.10716 -31.99393 -30.47749 -29.57247 -28.71317 -27.92892 -27.10027 -25.42770 -23.89935 -22.67909 -21.55730 -20.95959 -19.80708 -19.42811 -18.30393 -17.41747 -17.04768 -16.97976 -16.86169 -15.75787 -15.59931 -15.54945 -14.94779 -14.79973 -14.46311 -14.33420 -13.91899 -13.74060 -13.44737 -13.35394 -12.88834 -12.64359 -12.34188 -12.29460 -12.17758 -12.06988 -11.65774 -11.44413 -11.22405 -11.17438 -11.01826 -10.98324 -10.94020 -10.74605 -10.57662 -10.41154 -10.35132 -10.15703 -9.70723 -9.03744 -8.83641 -8.57169 -8.10797 -7.95528 -7.40109 -6.12527 -4.21254 1.34969 1.48336 2.00960 2.04732 3.25700 3.33438 3.38930 3.49962 3.77826 4.35926 4.46735 4.67070 4.76575 4.81155 4.84284 4.92100 4.94424 5.02213 5.12020 5.17519 5.32908 5.33993 5.41672 5.62762 5.71383 5.82655 5.93666 6.07063 6.13608 6.16603 6.25286 6.29122 6.34604 6.47280 6.56984 6.63540 6.80415 6.84517 7.04032 7.23520 7.35867 7.53344 7.60868 7.63326 7.82166 7.89304 7.96708 8.28575 8.81591 9.47105 9.56085 10.92780 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010319 B = 0.003658 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.744504 B = 7651.887639 C = 9836.265857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.361 6.361 3 C 0.458 3.542 4 O -0.467 6.467 5 C 0.070 3.930 6 O -0.274 6.274 7 C 0.150 3.850 8 C -0.215 4.215 9 C -0.087 4.087 10 C -0.157 4.157 11 C -0.077 4.077 12 C -0.089 4.089 13 C 0.095 3.905 14 N -0.514 5.514 15 C 0.044 3.956 16 C -0.139 4.139 17 C 0.250 3.750 18 O -0.577 6.577 19 C -0.534 4.534 20 H 0.060 0.940 21 C 0.071 3.929 22 N -0.892 5.892 23 Si 0.897 3.103 24 H -0.281 1.281 25 H -0.285 1.285 26 H -0.273 1.273 27 C 0.063 3.937 28 H 0.067 0.933 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.034 0.966 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.371 0.629 44 H 0.264 0.736 45 H 0.071 0.929 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.254 -17.890 10.052 21.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.279 6.279 3 C 0.298 3.702 4 O -0.351 6.351 5 C -0.006 4.006 6 O -0.187 6.187 7 C 0.104 3.896 8 C -0.234 4.234 9 C -0.105 4.105 10 C -0.175 4.175 11 C -0.095 4.095 12 C -0.090 4.090 13 C -0.034 4.034 14 N -0.238 5.238 15 C -0.084 4.084 16 C -0.178 4.178 17 C 0.210 3.790 18 O -0.383 6.383 19 C -0.573 4.573 20 H 0.078 0.922 21 C -0.131 4.131 22 N -0.531 5.531 23 Si 0.724 3.276 24 H -0.207 1.207 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.063 4.063 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.218 0.782 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.632 -18.266 10.213 21.672 hybrid contribution -0.213 1.901 -0.245 1.928 sum 5.419 -16.365 9.968 19.913 Atomic orbital electron populations 1.23310 0.75434 1.03737 1.03100 1.86412 1.23990 1.32665 1.84796 1.22974 0.91035 0.81986 0.74231 1.90800 1.66383 1.35911 1.41978 1.21787 0.89058 0.84903 1.04901 1.86235 1.20654 1.23314 1.88491 1.18706 0.81319 0.93525 0.96050 1.21183 0.94183 0.97963 1.10077 1.20834 0.94517 0.96810 0.98353 1.20992 0.99514 0.92594 1.04430 1.20945 0.91486 0.99437 0.97662 1.19282 0.94113 0.92215 1.03412 1.21021 0.95780 0.93529 0.93028 1.63560 1.05142 1.48902 1.06186 1.22883 0.93498 0.96295 0.95682 1.23220 0.98784 0.94143 1.01666 1.19548 0.89007 0.87090 0.83368 1.86201 1.86016 1.47512 1.18582 1.21558 1.28950 1.02335 1.04445 0.92191 1.24998 0.94803 0.98052 0.95251 1.69861 1.36804 1.36594 1.09886 0.86505 0.80941 0.82626 0.77482 1.20742 1.21035 1.19727 1.22947 0.91712 0.93955 0.97723 0.91425 0.87888 0.91694 0.87806 0.88120 0.85644 0.86069 0.86112 0.85547 0.94299 0.90314 0.92158 0.94793 0.92777 0.90303 0.78167 0.92616 0.91027 0.93784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.38 16 2 O -0.36 -3.86 10.57 -39.24 -0.41 -4.28 16 3 C 0.46 6.07 8.03 36.01 0.29 6.36 16 4 O -0.47 -8.33 16.25 -25.48 -0.41 -8.75 16 5 C 0.07 0.78 5.33 36.01 0.19 0.97 16 6 O -0.27 -4.27 8.98 -39.37 -0.35 -4.63 16 7 C 0.15 2.17 6.66 -39.22 -0.26 1.91 16 8 C -0.22 -2.45 9.04 -39.43 -0.36 -2.80 16 9 C -0.09 -0.91 10.04 -39.60 -0.40 -1.31 16 10 C -0.16 -1.75 10.04 -39.56 -0.40 -2.15 16 11 C -0.08 -1.01 9.26 -39.61 -0.37 -1.38 16 12 C -0.09 -1.37 5.07 -104.48 -0.53 -1.90 16 13 C 0.09 1.67 4.35 -4.98 -0.02 1.65 16 14 N -0.51 -10.87 5.11 -232.71 -1.19 -12.06 16 15 C 0.04 0.92 6.52 -2.84 -0.02 0.91 16 16 C -0.14 -3.36 5.17 -24.91 -0.13 -3.49 16 17 C 0.25 6.54 0.87 -89.64 -0.08 6.46 16 18 O -0.58 -15.84 13.16 -35.23 -0.46 -16.30 16 19 C -0.53 -14.90 8.28 -34.44 -0.29 -15.19 16 20 H 0.06 1.67 7.80 -52.49 -0.41 1.26 16 21 C 0.07 1.94 5.29 -17.82 -0.09 1.85 16 22 N -0.89 -24.41 10.76 55.43 0.60 -23.82 16 23 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.06 1.51 5.81 -2.30 -0.01 1.50 16 28 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 31 H 0.10 0.93 7.65 -51.93 -0.40 0.53 16 32 H 0.10 0.77 7.67 -51.93 -0.40 0.37 16 33 H 0.13 1.05 6.30 -52.48 -0.33 0.72 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.13 1.52 8.01 -52.49 -0.42 1.10 16 37 H 0.04 0.65 7.60 -51.93 -0.39 0.26 16 38 H 0.08 1.42 7.82 -51.93 -0.41 1.01 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.03 0.63 6.97 -51.93 -0.36 0.27 16 41 H 0.05 1.34 8.03 -51.93 -0.42 0.92 16 42 H 0.08 2.02 7.34 -51.93 -0.38 1.64 16 43 H 0.37 10.05 7.99 45.56 0.36 10.42 16 44 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.07 1.81 8.14 -51.93 -0.42 1.38 16 46 H 0.04 1.01 7.70 -51.93 -0.40 0.61 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -33.15 382.01 -8.95 -42.10 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -6.05 Total: 11.01 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -1.40 Total: -5.24 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.59 Total: -35.88 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -1.65 Total: -33.95 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.15 -8.95 -42.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895109318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.592 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds