Wall clock time and date at job start Tue Mar 31 2020 19:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34225 * 117.00003 * 2 1 4 4 O 1.20825 * 120.00196 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00259 * 179.97438 * 3 2 1 6 6 O 1.42899 * 109.47417 * 180.02562 * 5 3 2 7 7 C 1.35899 * 117.00043 * 179.97438 * 6 5 3 8 8 C 1.38754 * 120.05359 * 0.25147 * 7 6 5 9 9 C 1.38129 * 119.93909 * 180.27266 * 8 7 6 10 10 C 1.38284 * 120.05685 * 359.72836 * 9 8 7 11 11 C 1.38242 * 120.11266 * 0.02562 * 10 9 8 12 12 C 1.38166 * 120.05731 * 359.97438 * 11 10 9 13 13 C 1.50692 * 120.03021 * 180.02562 * 12 11 10 14 14 N 1.46895 * 109.47470 * 104.14436 * 13 12 11 15 15 C 1.47443 * 110.99948 * 284.41865 * 14 13 12 16 16 C 1.54313 * 107.23658 * 236.73915 * 15 14 13 17 17 C 1.55135 * 103.01908 * 337.71844 * 16 15 14 18 18 O 1.42895 * 110.98864 * 277.55850 * 17 16 15 19 19 C 1.50705 * 110.98929 * 153.74206 * 17 16 15 20 20 H 1.07996 * 119.99758 * 238.48111 * 19 17 16 21 21 C 1.37878 * 120.00242 * 58.48946 * 19 17 16 22 22 N 1.31519 * 119.99413 * 355.14235 * 21 19 17 23 23 Si 1.86796 * 120.00124 * 175.13759 * 21 19 17 24 24 H 1.48505 * 109.47109 * 94.99462 * 23 21 19 25 25 H 1.48502 * 109.47166 * 214.98972 * 23 21 19 26 26 H 1.48493 * 109.47204 * 334.99290 * 23 21 19 27 27 C 1.47846 * 111.00576 * 163.57706 * 14 13 12 28 28 H 1.09000 * 109.46937 * 60.00110 * 1 2 3 29 29 H 1.08996 * 109.46895 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47259 * 299.99745 * 1 2 3 31 31 H 1.09003 * 109.46923 * 59.99728 * 5 3 2 32 32 H 1.09005 * 109.46831 * 300.00665 * 5 3 2 33 33 H 1.08003 * 120.03296 * 0.02721 * 8 7 6 34 34 H 1.07999 * 119.96706 * 179.74499 * 9 8 7 35 35 H 1.08003 * 119.94094 * 180.02562 * 10 9 8 36 36 H 1.07999 * 119.97161 * 180.02562 * 11 10 9 37 37 H 1.08995 * 109.47120 * 344.14097 * 13 12 11 38 38 H 1.09000 * 109.47075 * 224.14376 * 13 12 11 39 39 H 1.09005 * 109.88526 * 117.33229 * 15 14 13 40 40 H 1.09003 * 109.88617 * 356.15152 * 15 14 13 41 41 H 1.09006 * 110.70381 * 96.10082 * 16 15 14 42 42 H 1.09000 * 110.70974 * 219.33290 * 16 15 14 43 43 H 0.96702 * 114.00690 * 298.54279 * 18 17 16 44 44 H 0.97004 * 119.99342 * 180.02562 * 22 21 19 45 45 H 1.08994 * 110.37695 * 265.19399 * 27 14 13 46 46 H 1.09000 * 110.37088 * 27.42132 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 8 3.9716 2.6452 0.0011 7 6 5.3077 2.8936 0.0022 8 6 6.2103 1.8398 -0.0025 9 6 7.5678 2.0949 0.0043 10 6 8.0275 3.3991 0.0101 11 6 7.1302 4.4507 0.0097 12 6 5.7713 4.2009 0.0028 13 6 4.7937 5.3477 0.0017 14 7 4.2245 5.5047 -1.3433 15 6 5.1939 6.1370 -2.2568 16 6 4.5241 7.4042 -2.8285 17 6 3.0113 7.1120 -2.6472 18 8 2.5153 6.3007 -3.7138 19 6 2.2240 8.3920 -2.5342 20 1 1.6261 8.5824 -1.6552 21 6 2.2669 9.3200 -3.5530 22 7 3.0679 9.1332 -4.5793 23 14 1.1872 10.8424 -3.4758 24 1 1.9610 11.9690 -2.8949 25 1 0.7410 11.2028 -4.8455 26 1 0.0016 10.5659 -2.6256 27 6 3.0012 6.3342 -1.3076 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9565 0.7805 -0.8892 32 1 3.9557 0.7808 0.8908 33 1 5.8519 0.8210 -0.0075 34 1 8.2708 1.2750 0.0049 35 1 9.0893 3.5964 0.0151 36 1 7.4917 5.4684 0.0138 37 1 5.3090 6.2647 0.2875 38 1 3.9936 5.1438 0.7133 39 1 5.4419 5.4511 -3.0668 40 1 6.0962 6.4094 -1.7092 41 1 4.8174 8.2858 -2.2584 42 1 4.7691 7.5271 -3.8835 43 1 2.5913 6.7093 -4.5870 44 1 3.0983 9.7863 -5.2959 45 1 2.1157 5.7020 -1.2425 46 1 3.0358 7.0253 -0.4654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895109318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:08 Heat of formation + Delta-G solvation = -149.914418 kcal Electronic energy + Delta-G solvation = -29604.578861 eV Core-core repulsion = 25459.331599 eV Total energy + Delta-G solvation = -4145.247262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.78297 -41.05340 -39.95006 -38.44117 -37.45806 -36.57790 -34.25540 -33.31772 -31.37840 -30.84801 -29.99945 -29.82735 -27.89559 -27.08895 -25.61687 -23.62089 -22.72197 -21.93404 -21.44245 -21.41095 -19.30172 -18.99226 -18.38000 -17.98097 -17.88750 -17.09844 -16.87380 -16.71741 -16.54639 -16.29846 -16.07829 -15.75860 -15.28254 -14.73987 -14.70604 -14.49237 -14.28752 -13.96933 -13.83273 -13.67161 -13.44945 -13.32815 -13.15339 -12.98120 -12.85655 -12.83611 -12.61072 -12.28702 -12.20242 -12.17197 -12.05426 -11.88122 -11.79736 -11.61286 -11.47132 -11.03544 -10.67455 -10.09995 -9.76270 -9.11959 -9.03276 -8.21733 -6.39122 0.42846 0.56661 1.03278 1.15546 1.37148 1.39886 1.50735 2.36711 2.61168 2.81449 3.01134 3.34654 3.60578 3.77515 3.90106 3.97319 4.03678 4.05074 4.09999 4.21969 4.26982 4.29085 4.30321 4.39566 4.46732 4.47896 4.59630 4.66895 4.68431 4.76632 4.85016 4.90554 5.07353 5.12270 5.22327 5.27068 5.44468 5.48378 5.53417 5.56439 5.66235 5.80057 5.92205 5.99397 6.22976 6.33172 6.45459 6.64708 6.65894 7.32188 7.40059 8.82168 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010319 B = 0.003658 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.744504 B = 7651.887639 C = 9836.265857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.351 6.351 3 C 0.459 3.541 4 O -0.527 6.527 5 C 0.066 3.934 6 O -0.314 6.314 7 C 0.130 3.870 8 C -0.211 4.211 9 C -0.079 4.079 10 C -0.157 4.157 11 C -0.085 4.085 12 C -0.122 4.122 13 C 0.100 3.900 14 N -0.520 5.520 15 C 0.058 3.942 16 C -0.127 4.127 17 C 0.235 3.765 18 O -0.587 6.587 19 C -0.566 4.566 20 H 0.049 0.951 21 C 0.034 3.966 22 N -0.905 5.905 23 Si 0.959 3.041 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.276 1.276 27 C 0.074 3.926 28 H 0.054 0.946 29 H 0.143 0.857 30 H 0.061 0.939 31 H 0.129 0.871 32 H 0.141 0.859 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.148 0.852 36 H 0.132 0.868 37 H 0.044 0.956 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.043 0.957 42 H 0.061 0.939 43 H 0.368 0.632 44 H 0.268 0.732 45 H 0.046 0.954 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.357 -19.757 10.609 23.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.268 6.268 3 C 0.302 3.698 4 O -0.415 6.415 5 C -0.009 4.009 6 O -0.227 6.227 7 C 0.085 3.915 8 C -0.229 4.229 9 C -0.097 4.097 10 C -0.175 4.175 11 C -0.103 4.103 12 C -0.123 4.123 13 C -0.028 4.028 14 N -0.243 5.243 15 C -0.070 4.070 16 C -0.166 4.166 17 C 0.195 3.805 18 O -0.394 6.394 19 C -0.604 4.604 20 H 0.067 0.933 21 C -0.168 4.168 22 N -0.544 5.544 23 Si 0.785 3.215 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.201 1.201 27 C -0.054 4.054 28 H 0.073 0.927 29 H 0.161 0.839 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.158 0.842 33 H 0.176 0.824 34 H 0.176 0.824 35 H 0.166 0.834 36 H 0.149 0.851 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.215 0.785 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.758 -20.173 10.779 24.152 hybrid contribution -0.860 2.356 -0.402 2.540 sum 6.897 -17.817 10.376 21.741 Atomic orbital electron populations 1.23599 0.74250 1.06089 1.02391 1.86423 1.25165 1.31203 1.83999 1.23601 0.92097 0.81714 0.72367 1.90782 1.67775 1.37859 1.45055 1.22151 0.87343 0.83628 1.07827 1.86171 1.21660 1.25967 1.88931 1.18935 0.81449 0.94103 0.96988 1.21552 0.94161 0.98599 1.08611 1.21325 0.94751 0.97606 0.95995 1.21350 1.00544 0.92426 1.03158 1.21089 0.90851 1.00616 0.97771 1.19200 0.94474 0.91854 1.06796 1.20963 0.96040 0.95212 0.90549 1.63489 1.04478 1.47877 1.08499 1.22729 0.94036 0.94458 0.95760 1.22989 0.97789 0.95253 1.00543 1.19764 0.90001 0.86957 0.83743 1.86195 1.86413 1.47977 1.18788 1.21767 1.30071 1.03734 1.04828 0.93299 1.25674 0.95735 1.00582 0.94759 1.69941 1.37058 1.37361 1.10032 0.85537 0.79087 0.79290 0.77636 1.19798 1.20198 1.20078 1.22714 0.92462 0.93525 0.96682 0.92692 0.83914 0.91996 0.85310 0.84183 0.82422 0.82430 0.83435 0.85055 0.93736 0.91761 0.92528 0.92163 0.93846 0.91999 0.78499 0.92227 0.93526 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.35 -7.17 10.57 -51.36 -0.54 -7.71 16 3 C 0.46 12.22 8.03 71.24 0.57 12.79 16 4 O -0.53 -19.85 16.25 28.40 0.46 -19.39 16 5 C 0.07 1.36 5.33 71.24 0.38 1.74 16 6 O -0.31 -9.75 8.98 -73.33 -0.66 -10.41 16 7 C 0.13 3.63 6.66 22.51 0.15 3.78 16 8 C -0.21 -4.04 9.04 22.37 0.20 -3.83 16 9 C -0.08 -1.29 10.04 22.25 0.22 -1.07 16 10 C -0.16 -2.94 10.04 22.28 0.22 -2.71 16 11 C -0.08 -2.07 9.26 22.25 0.21 -1.87 16 12 C -0.12 -3.70 5.07 -19.77 -0.10 -3.80 16 13 C 0.10 3.63 4.35 85.56 0.37 4.00 16 14 N -0.52 -22.59 5.11 -890.15 -4.55 -27.14 16 15 C 0.06 2.44 6.52 86.64 0.56 3.01 16 16 C -0.13 -6.28 5.17 31.77 0.16 -6.11 16 17 C 0.24 12.76 0.87 -10.16 -0.01 12.75 16 18 O -0.59 -33.55 13.16 -148.98 -1.96 -35.51 16 19 C -0.57 -32.57 8.28 25.60 0.21 -32.35 16 20 H 0.05 2.84 7.80 -2.91 -0.02 2.81 16 21 C 0.03 1.86 5.29 84.65 0.45 2.31 16 22 N -0.91 -50.08 10.76 21.45 0.23 -49.85 16 23 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 C 0.07 3.68 5.81 86.77 0.50 4.19 16 28 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 29 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 31 H 0.13 1.97 7.65 -2.39 -0.02 1.95 16 32 H 0.14 1.71 7.67 -2.38 -0.02 1.69 16 33 H 0.16 1.87 6.30 -2.91 -0.02 1.85 16 34 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 35 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 36 H 0.13 2.94 8.01 -2.91 -0.02 2.92 16 37 H 0.04 1.52 7.60 -2.39 -0.02 1.50 16 38 H 0.06 2.46 7.82 -2.39 -0.02 2.44 16 39 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 40 H 0.06 2.21 6.97 -2.39 -0.02 2.20 16 41 H 0.04 2.19 8.03 -2.38 -0.02 2.18 16 42 H 0.06 3.24 7.34 -2.39 -0.02 3.22 16 43 H 0.37 20.75 7.99 -74.06 -0.59 20.16 16 44 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 45 H 0.05 2.51 8.14 -2.39 -0.02 2.50 16 46 H 0.05 2.19 7.70 -2.39 -0.02 2.17 16 Total: -1.00 -75.38 382.01 0.73 -74.66 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: 0.41 Total: 34.96 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 5.31 Total: -5.51 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -4.31 Total: -76.99 kcal Atomic # 8 Polarization: -70.32 SS G_CDS: -2.70 Total: -73.03 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -75.38 0.73 -74.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895109318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.258 kcal (2) G-P(sol) polarization free energy of solvation -75.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds