Wall clock time and date at job start Tue Mar 31 2020 19:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00602 * 2 1 4 4 C 1.53000 * 109.47445 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46771 * 65.00406 * 4 3 2 6 6 C 1.36874 * 120.00152 * 273.64954 * 5 4 3 7 7 H 1.07990 * 120.00359 * 134.00901 * 6 5 4 8 8 C 1.39046 * 119.99808 * 314.01111 * 6 5 4 9 9 N 1.31368 * 120.00037 * 2.88568 * 8 6 5 10 10 Si 1.86800 * 120.00097 * 182.88926 * 8 6 5 11 11 H 1.48497 * 109.47277 * 59.99466 * 10 8 6 12 12 H 1.48500 * 109.47456 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46923 * 299.99719 * 10 8 6 14 14 C 1.34779 * 119.99856 * 93.65262 * 5 4 3 15 15 O 1.21586 * 120.00080 * 4.24386 * 14 5 4 16 16 C 1.47730 * 119.99554 * 184.24698 * 14 5 4 17 17 C 1.39665 * 120.15224 * 53.39886 * 16 14 5 18 18 C 1.37913 * 119.84391 * 180.27151 * 17 16 14 19 19 C 1.38399 * 120.15254 * 359.71005 * 18 17 16 20 20 C 1.38356 * 120.30460 * 0.02562 * 19 18 17 21 21 C 1.37956 * 120.15290 * 0.02562 * 20 19 18 22 22 C 1.50694 * 120.07748 * 179.97438 * 21 20 19 23 23 C 1.52997 * 109.47199 * 261.23270 * 22 21 20 24 24 C 1.50703 * 109.46899 * 180.02562 * 23 22 21 25 25 O 1.20822 * 120.00418 * 359.97438 * 24 23 22 26 26 O 1.34232 * 119.99782 * 179.97438 * 24 23 22 27 27 C 1.45199 * 117.00055 * 179.97438 * 26 24 23 28 28 H 1.08997 * 109.47847 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46612 * 299.99282 * 1 2 3 30 30 H 1.08997 * 109.47278 * 59.98796 * 1 2 3 31 31 H 1.09008 * 109.46733 * 60.00757 * 3 2 1 32 32 H 1.09000 * 109.47371 * 300.00826 * 3 2 1 33 33 H 1.08998 * 109.47290 * 305.00503 * 4 3 2 34 34 H 1.08997 * 109.47309 * 185.00496 * 4 3 2 35 35 H 0.97008 * 119.99512 * 179.97438 * 9 8 6 36 36 H 1.07996 * 120.07941 * 359.97438 * 17 16 14 37 37 H 1.08003 * 119.92468 * 179.72149 * 18 17 16 38 38 H 1.08007 * 119.84536 * 180.02562 * 19 18 17 39 39 H 1.08000 * 119.92211 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47175 * 21.23234 * 22 21 20 41 41 H 1.09004 * 109.47231 * 141.23043 * 22 21 20 42 42 H 1.08998 * 109.47244 * 299.99566 * 23 22 21 43 43 H 1.09000 * 109.47465 * 60.00187 * 23 22 21 44 44 H 1.08995 * 109.47621 * 180.02562 * 27 26 24 45 45 H 1.08995 * 109.47469 * 300.00773 * 27 26 24 46 46 H 1.09007 * 109.46723 * 60.00740 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9756 0.5643 -1.2528 6 6 4.0249 -0.7993 -1.3608 7 1 3.6209 -1.2866 -2.2357 8 6 4.5953 -1.5570 -0.3441 9 7 5.0355 -0.9693 0.7452 10 14 4.7357 -3.4107 -0.5270 11 1 5.5623 -3.7294 -1.7188 12 1 5.3748 -3.9810 0.6862 13 1 3.3810 -3.9957 -0.6935 14 6 4.3320 1.3365 -2.2984 15 8 4.3624 2.5460 -2.1784 16 6 4.6856 0.7131 -3.5902 17 6 3.8059 -0.1836 -4.2006 18 6 4.1448 -0.7662 -5.4038 19 6 5.3509 -0.4593 -6.0094 20 6 6.2246 0.4324 -5.4130 21 6 5.8987 1.0216 -4.2089 22 6 6.8519 1.9921 -3.5605 23 6 7.6573 1.2701 -2.4784 24 6 8.6100 2.2409 -1.8296 25 8 8.6420 3.3920 -2.1955 26 8 9.4232 1.8268 -0.8452 27 6 10.3149 2.8160 -0.2667 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8898 31 1 1.6888 1.8462 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8515 0.5679 0.8409 34 1 3.9787 2.1762 0.0890 35 1 5.4331 -1.4981 1.4547 36 1 2.8645 -0.4240 -3.7291 37 1 3.4675 -1.4632 -5.8747 38 1 5.6112 -0.9181 -6.9519 39 1 7.1644 0.6670 -5.8907 40 1 7.5315 2.3918 -4.3133 41 1 6.2881 2.8089 -3.1098 42 1 6.9778 0.8706 -1.7256 43 1 8.2211 0.4534 -2.9291 44 1 10.9155 2.3509 0.5149 45 1 10.9712 3.2111 -1.0421 46 1 9.7276 3.6286 0.1610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909558284.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:05 Heat of formation + Delta-G solvation = -134.345072 kcal Electronic energy + Delta-G solvation = -30474.464144 eV Core-core repulsion = 26329.892020 eV Total energy + Delta-G solvation = -4144.572125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.20979 -39.49850 -37.80269 -36.76687 -36.28926 -34.77658 -33.57467 -31.54645 -30.87494 -29.79130 -28.81324 -27.47399 -25.80048 -24.90863 -24.34010 -23.06114 -21.75984 -20.89644 -20.05028 -19.18981 -17.61272 -17.24913 -16.35964 -16.26444 -16.14565 -15.52321 -15.41540 -15.17427 -15.04445 -14.57154 -14.33112 -14.18631 -13.67264 -13.64058 -13.36342 -13.04728 -12.71900 -12.62425 -12.37389 -12.33226 -11.94930 -11.85122 -11.62573 -11.43217 -11.24927 -11.13334 -10.98604 -10.90576 -10.72650 -10.61448 -10.51753 -10.38917 -10.31062 -10.13243 -10.00769 -9.06632 -8.94777 -8.55193 -8.27958 -8.14280 -7.41691 -6.21492 -4.08919 1.69351 1.86468 2.55194 3.04693 3.20047 3.25477 3.26923 3.77080 4.12080 4.37926 4.56818 4.78558 5.02439 5.10748 5.22539 5.26992 5.29941 5.35167 5.45540 5.53975 5.54495 5.65883 5.69128 5.73193 5.76906 5.88403 5.97711 6.01423 6.05210 6.08311 6.22273 6.36620 6.38331 6.43263 6.52054 6.63333 6.74884 6.75453 6.89281 6.96560 7.17462 7.36559 7.45541 7.64503 7.87614 8.06754 8.08004 8.43169 9.13834 9.46416 9.89765 10.74642 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008747 B = 0.005161 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.213661 B = 5424.419120 C = 6147.768060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.057 3.943 4 C 0.095 3.905 5 N -0.419 5.419 6 C -0.320 4.320 7 H 0.090 0.910 8 C 0.054 3.946 9 N -0.871 5.871 10 Si 0.914 3.086 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.507 3.493 15 O -0.597 6.597 16 C -0.065 4.065 17 C -0.078 4.078 18 C -0.133 4.133 19 C -0.119 4.119 20 C -0.126 4.126 21 C -0.051 4.051 22 C -0.076 4.076 23 C -0.108 4.108 24 C 0.468 3.532 25 O -0.513 6.513 26 O -0.358 6.358 27 C 0.036 3.964 28 H 0.076 0.924 29 H 0.028 0.972 30 H 0.030 0.970 31 H 0.038 0.962 32 H 0.033 0.967 33 H 0.137 0.863 34 H 0.068 0.932 35 H 0.269 0.731 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.058 0.942 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.128 -0.083 -4.691 5.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C -0.021 4.021 4 C -0.028 4.028 5 N -0.135 5.135 6 C -0.448 4.448 7 H 0.107 0.893 8 C -0.151 4.151 9 N -0.508 5.508 10 Si 0.741 3.259 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.296 3.704 15 O -0.484 6.484 16 C -0.068 4.068 17 C -0.096 4.096 18 C -0.151 4.151 19 C -0.138 4.138 20 C -0.144 4.144 21 C -0.052 4.052 22 C -0.113 4.113 23 C -0.145 4.145 24 C 0.312 3.688 25 O -0.401 6.401 26 O -0.275 6.275 27 C -0.058 4.058 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.154 0.846 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.145 0.855 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.124 0.876 42 H 0.138 0.862 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.077 0.923 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.373 0.625 -4.464 5.094 hybrid contribution -0.226 -0.736 0.118 0.779 sum 2.147 -0.111 -4.345 4.848 Atomic orbital electron populations 1.22638 0.83806 1.01627 0.98654 1.88195 1.16940 1.27459 1.94944 1.22985 0.96683 0.84333 0.98110 1.21911 0.89194 0.99451 0.92283 1.43222 1.54402 1.06038 1.09846 1.19374 1.38229 0.80394 1.06837 0.89258 1.25403 0.94538 0.99837 0.95304 1.69474 1.38661 1.36123 1.06572 0.86194 0.78687 0.83186 0.77816 1.19759 1.20994 1.19858 1.18491 0.80470 0.86417 0.85072 1.90619 1.58866 1.14329 1.84613 1.19840 0.94559 0.97005 0.95421 1.21270 0.99610 0.94360 0.94403 1.20988 0.97244 1.00800 0.96028 1.21058 0.94599 0.98431 0.99674 1.20850 0.99633 0.98310 0.95607 1.19679 0.94097 0.96957 0.94493 1.20508 0.96455 0.97678 0.96628 1.21410 0.96574 0.96925 0.99636 1.23942 0.79045 0.88799 0.77010 1.90626 1.67119 1.20276 1.62052 1.86562 1.48922 1.42785 1.49231 1.23193 0.92433 0.92068 0.98113 0.90503 0.95311 0.95190 0.94435 0.94887 0.84639 0.91340 0.92011 0.85543 0.86443 0.86645 0.86361 0.91001 0.87616 0.86242 0.88106 0.88426 0.92299 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.54 10.00 -35.23 -0.35 -7.90 16 3 C 0.06 1.17 6.28 37.16 0.23 1.40 16 4 C 0.09 2.22 5.58 -4.04 -0.02 2.20 16 5 N -0.42 -10.11 2.51 -115.93 -0.29 -10.40 16 6 C -0.32 -7.80 7.62 -15.00 -0.11 -7.91 16 7 H 0.09 2.12 5.15 -52.49 -0.27 1.85 16 8 C 0.05 1.33 5.40 -17.45 -0.09 1.23 16 9 N -0.87 -22.13 10.77 55.50 0.60 -21.53 16 10 Si 0.91 19.59 29.55 -169.99 -5.02 14.57 16 11 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 14 C 0.51 12.04 5.91 -12.38 -0.07 11.97 16 15 O -0.60 -15.42 14.62 5.29 0.08 -15.34 16 16 C -0.07 -1.36 5.01 -104.97 -0.53 -1.89 16 17 C -0.08 -1.46 7.89 -39.17 -0.31 -1.77 16 18 C -0.13 -2.07 10.03 -39.64 -0.40 -2.47 16 19 C -0.12 -1.73 10.04 -39.48 -0.40 -2.13 16 20 C -0.13 -1.96 9.66 -39.64 -0.38 -2.34 16 21 C -0.05 -0.95 5.17 -104.21 -0.54 -1.49 16 22 C -0.08 -1.40 4.12 -27.89 -0.11 -1.51 16 23 C -0.11 -1.95 5.75 -27.88 -0.16 -2.11 16 24 C 0.47 8.58 7.96 36.01 0.29 8.86 16 25 O -0.51 -10.26 15.73 -18.75 -0.29 -10.56 16 26 O -0.36 -6.03 10.57 -39.26 -0.41 -6.44 16 27 C 0.04 0.46 10.56 101.05 1.07 1.52 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.03 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.14 3.43 5.18 -51.93 -0.27 3.16 16 34 H 0.07 1.63 7.26 -51.93 -0.38 1.25 16 35 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 36 H 0.13 2.39 7.07 -52.49 -0.37 2.02 16 37 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 38 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 39 H 0.12 1.52 8.04 -52.49 -0.42 1.10 16 40 H 0.07 1.18 7.98 -51.93 -0.41 0.76 16 41 H 0.11 2.30 5.99 -51.93 -0.31 1.99 16 42 H 0.12 2.54 7.50 -51.93 -0.39 2.15 16 43 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 46 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -30.23 384.92 -6.94 -37.17 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -6.61 Total: 9.47 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -0.43 Total: 5.16 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.31 Total: -31.93 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -0.98 Total: -40.24 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.23 -6.94 -37.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909558284.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.176 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds