Wall clock time and date at job start Tue Mar 31 2020 19:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00602 * 2 1 4 4 C 1.53000 * 109.47445 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46771 * 65.00406 * 4 3 2 6 6 C 1.36874 * 120.00152 * 273.64954 * 5 4 3 7 7 H 1.07990 * 120.00359 * 134.00901 * 6 5 4 8 8 C 1.39046 * 119.99808 * 314.01111 * 6 5 4 9 9 N 1.31368 * 120.00037 * 2.88568 * 8 6 5 10 10 Si 1.86800 * 120.00097 * 182.88926 * 8 6 5 11 11 H 1.48497 * 109.47277 * 59.99466 * 10 8 6 12 12 H 1.48500 * 109.47456 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46923 * 299.99719 * 10 8 6 14 14 C 1.34779 * 119.99856 * 93.65262 * 5 4 3 15 15 O 1.21586 * 120.00080 * 4.24386 * 14 5 4 16 16 C 1.47730 * 119.99554 * 184.24698 * 14 5 4 17 17 C 1.39665 * 120.15224 * 53.39886 * 16 14 5 18 18 C 1.37913 * 119.84391 * 180.27151 * 17 16 14 19 19 C 1.38399 * 120.15254 * 359.71005 * 18 17 16 20 20 C 1.38356 * 120.30460 * 0.02562 * 19 18 17 21 21 C 1.37956 * 120.15290 * 0.02562 * 20 19 18 22 22 C 1.50694 * 120.07748 * 179.97438 * 21 20 19 23 23 C 1.52997 * 109.47199 * 261.23270 * 22 21 20 24 24 C 1.50703 * 109.46899 * 180.02562 * 23 22 21 25 25 O 1.20822 * 120.00418 * 359.97438 * 24 23 22 26 26 O 1.34232 * 119.99782 * 179.97438 * 24 23 22 27 27 C 1.45199 * 117.00055 * 179.97438 * 26 24 23 28 28 H 1.08997 * 109.47847 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46612 * 299.99282 * 1 2 3 30 30 H 1.08997 * 109.47278 * 59.98796 * 1 2 3 31 31 H 1.09008 * 109.46733 * 60.00757 * 3 2 1 32 32 H 1.09000 * 109.47371 * 300.00826 * 3 2 1 33 33 H 1.08998 * 109.47290 * 305.00503 * 4 3 2 34 34 H 1.08997 * 109.47309 * 185.00496 * 4 3 2 35 35 H 0.97008 * 119.99512 * 179.97438 * 9 8 6 36 36 H 1.07996 * 120.07941 * 359.97438 * 17 16 14 37 37 H 1.08003 * 119.92468 * 179.72149 * 18 17 16 38 38 H 1.08007 * 119.84536 * 180.02562 * 19 18 17 39 39 H 1.08000 * 119.92211 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47175 * 21.23234 * 22 21 20 41 41 H 1.09004 * 109.47231 * 141.23043 * 22 21 20 42 42 H 1.08998 * 109.47244 * 299.99566 * 23 22 21 43 43 H 1.09000 * 109.47465 * 60.00187 * 23 22 21 44 44 H 1.08995 * 109.47621 * 180.02562 * 27 26 24 45 45 H 1.08995 * 109.47469 * 300.00773 * 27 26 24 46 46 H 1.09007 * 109.46723 * 60.00740 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9756 0.5643 -1.2528 6 6 4.0249 -0.7993 -1.3608 7 1 3.6209 -1.2866 -2.2357 8 6 4.5953 -1.5570 -0.3441 9 7 5.0355 -0.9693 0.7452 10 14 4.7357 -3.4107 -0.5270 11 1 5.5623 -3.7294 -1.7188 12 1 5.3748 -3.9810 0.6862 13 1 3.3810 -3.9957 -0.6935 14 6 4.3320 1.3365 -2.2984 15 8 4.3624 2.5460 -2.1784 16 6 4.6856 0.7131 -3.5902 17 6 3.8059 -0.1836 -4.2006 18 6 4.1448 -0.7662 -5.4038 19 6 5.3509 -0.4593 -6.0094 20 6 6.2246 0.4324 -5.4130 21 6 5.8987 1.0216 -4.2089 22 6 6.8519 1.9921 -3.5605 23 6 7.6573 1.2701 -2.4784 24 6 8.6100 2.2409 -1.8296 25 8 8.6420 3.3920 -2.1955 26 8 9.4232 1.8268 -0.8452 27 6 10.3149 2.8160 -0.2667 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8898 31 1 1.6888 1.8462 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8515 0.5679 0.8409 34 1 3.9787 2.1762 0.0890 35 1 5.4331 -1.4981 1.4547 36 1 2.8645 -0.4240 -3.7291 37 1 3.4675 -1.4632 -5.8747 38 1 5.6112 -0.9181 -6.9519 39 1 7.1644 0.6670 -5.8907 40 1 7.5315 2.3918 -4.3133 41 1 6.2881 2.8089 -3.1098 42 1 6.9778 0.8706 -1.7256 43 1 8.2211 0.4534 -2.9291 44 1 10.9155 2.3509 0.5149 45 1 10.9712 3.2111 -1.0421 46 1 9.7276 3.6286 0.1610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909558284.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:04 Heat of formation + Delta-G solvation = -151.226817 kcal Electronic energy + Delta-G solvation = -30475.196192 eV Core-core repulsion = 26329.892020 eV Total energy + Delta-G solvation = -4145.304172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64900 -41.06414 -39.35264 -38.37428 -37.67802 -36.60090 -35.01751 -33.42038 -32.33578 -31.14038 -30.41688 -28.63214 -27.26824 -26.65072 -25.77701 -24.56482 -23.29919 -22.31422 -21.50251 -20.95136 -19.21912 -18.69272 -17.91875 -17.73650 -17.57873 -17.13175 -16.97573 -16.68538 -16.50591 -16.15063 -16.00070 -15.73652 -15.14507 -14.99463 -14.68336 -14.59197 -14.24431 -14.09214 -13.79344 -13.62886 -13.48149 -13.38251 -13.15682 -12.94377 -12.73332 -12.69811 -12.60207 -12.43594 -12.26275 -12.09780 -12.03293 -11.84113 -11.81328 -11.71843 -11.58690 -10.91029 -10.51680 -10.32416 -9.67903 -9.51923 -9.24516 -8.07817 -6.00015 0.33063 0.56361 1.08948 1.49897 1.51301 1.58254 1.76126 2.07412 2.40011 2.86880 3.02779 3.16227 3.26291 3.67872 3.92277 3.97679 4.15626 4.19649 4.24425 4.25728 4.27180 4.28880 4.33163 4.45619 4.52081 4.54167 4.58989 4.63288 4.64080 4.66856 4.74042 4.79979 4.88654 4.95762 5.05338 5.18802 5.26413 5.33947 5.45580 5.60928 5.65921 5.73854 5.80050 6.13215 6.18783 6.45656 6.54423 6.65575 7.25274 7.62177 8.05619 8.88362 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008747 B = 0.005161 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.213661 B = 5424.419120 C = 6147.768060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.389 6.389 3 C 0.069 3.931 4 C 0.092 3.908 5 N -0.427 5.427 6 C -0.321 4.321 7 H 0.094 0.906 8 C 0.013 3.987 9 N -0.898 5.898 10 Si 0.972 3.028 11 H -0.264 1.264 12 H -0.286 1.286 13 H -0.270 1.270 14 C 0.501 3.499 15 O -0.632 6.632 16 C -0.102 4.102 17 C -0.094 4.094 18 C -0.127 4.127 19 C -0.104 4.104 20 C -0.119 4.119 21 C -0.067 4.067 22 C -0.067 4.067 23 C -0.100 4.100 24 C 0.470 3.530 25 O -0.535 6.535 26 O -0.368 6.368 27 C 0.027 3.973 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.038 0.962 31 H 0.061 0.939 32 H 0.024 0.976 33 H 0.119 0.881 34 H 0.050 0.950 35 H 0.267 0.733 36 H 0.113 0.887 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.153 0.847 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.071 0.929 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.759 -2.182 -7.025 7.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.307 6.307 3 C -0.009 4.009 4 C -0.032 4.032 5 N -0.143 5.143 6 C -0.449 4.449 7 H 0.111 0.889 8 C -0.189 4.189 9 N -0.536 5.536 10 Si 0.796 3.204 11 H -0.188 1.188 12 H -0.212 1.212 13 H -0.195 1.195 14 C 0.292 3.708 15 O -0.521 6.521 16 C -0.105 4.105 17 C -0.112 4.112 18 C -0.144 4.144 19 C -0.122 4.122 20 C -0.137 4.137 21 C -0.068 4.068 22 C -0.104 4.104 23 C -0.138 4.138 24 C 0.315 3.685 25 O -0.425 6.425 26 O -0.284 6.284 27 C -0.066 4.066 28 H 0.112 0.888 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.137 0.863 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.131 0.869 37 H 0.169 0.831 38 H 0.179 0.821 39 H 0.171 0.829 40 H 0.113 0.887 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.090 0.910 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.991 -1.487 -6.794 7.571 hybrid contribution -0.426 -0.043 0.835 0.938 sum 2.566 -1.530 -5.959 6.666 Atomic orbital electron populations 1.22873 0.81031 1.03224 1.00037 1.88122 1.20020 1.27387 1.95202 1.22747 0.94696 0.84670 0.98758 1.21811 0.91402 0.97969 0.91997 1.43369 1.54635 1.06292 1.09980 1.19554 1.37995 0.80473 1.06919 0.88854 1.26119 0.94322 1.03499 0.94973 1.69617 1.39571 1.37278 1.07160 0.85314 0.78687 0.78601 0.77786 1.18849 1.21178 1.19499 1.19050 0.79522 0.86059 0.86191 1.90572 1.60208 1.15857 1.85488 1.19771 0.96736 0.99303 0.94697 1.21264 0.99003 0.94923 0.96049 1.21370 0.98306 1.00245 0.94518 1.21585 0.93183 0.96799 1.00604 1.21242 1.01121 0.97376 0.93980 1.19805 0.93410 0.97677 0.95884 1.20368 0.96438 0.96661 0.96970 1.21319 0.96087 0.97660 0.98727 1.23957 0.79084 0.88369 0.77121 1.90606 1.67942 1.21005 1.62912 1.86539 1.49149 1.44115 1.48611 1.23563 0.92040 0.91707 0.99263 0.88845 0.93309 0.94329 0.92050 0.95744 0.86343 0.93144 0.92260 0.86899 0.83143 0.82105 0.82917 0.88720 0.91799 0.90031 0.85180 0.84989 0.90993 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.76 11.01 113.37 1.25 2.01 16 2 O -0.39 -16.60 10.00 -148.98 -1.49 -18.09 16 3 C 0.07 2.95 6.28 71.98 0.45 3.40 16 4 C 0.09 4.57 5.58 86.38 0.48 5.05 16 5 N -0.43 -21.71 2.51 -638.96 -1.60 -23.31 16 6 C -0.32 -16.09 7.62 84.10 0.64 -15.45 16 7 H 0.09 4.51 5.15 -2.92 -0.02 4.50 16 8 C 0.01 0.62 5.40 84.96 0.46 1.08 16 9 N -0.90 -47.26 10.77 21.68 0.23 -47.03 16 10 Si 0.97 40.06 29.55 68.60 2.03 42.08 16 11 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 12 H -0.29 -11.78 7.11 99.48 0.71 -11.07 16 13 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 14 C 0.50 25.23 5.91 86.75 0.51 25.75 16 15 O -0.63 -35.06 14.62 -3.99 -0.06 -35.11 16 16 C -0.10 -4.36 5.01 -20.09 -0.10 -4.46 16 17 C -0.09 -3.46 7.89 22.54 0.18 -3.29 16 18 C -0.13 -3.53 10.03 22.23 0.22 -3.31 16 19 C -0.10 -2.51 10.04 22.34 0.22 -2.29 16 20 C -0.12 -3.29 9.66 22.23 0.21 -3.08 16 21 C -0.07 -2.45 5.17 -19.60 -0.10 -2.55 16 22 C -0.07 -2.52 4.12 29.85 0.12 -2.40 16 23 C -0.10 -3.71 5.75 29.85 0.17 -3.54 16 24 C 0.47 17.57 7.96 71.24 0.57 18.14 16 25 O -0.53 -21.89 15.73 21.98 0.35 -21.54 16 26 O -0.37 -12.40 10.57 -51.44 -0.54 -12.94 16 27 C 0.03 0.67 10.56 113.37 1.20 1.87 16 28 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.12 6.36 5.18 -2.39 -0.01 6.35 16 34 H 0.05 2.61 7.26 -2.39 -0.02 2.59 16 35 H 0.27 13.50 8.31 -92.70 -0.77 12.73 16 36 H 0.11 4.35 7.07 -2.91 -0.02 4.33 16 37 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 39 H 0.15 3.14 8.04 -2.91 -0.02 3.12 16 40 H 0.09 3.03 7.98 -2.39 -0.02 3.01 16 41 H 0.06 2.95 5.99 -2.39 -0.01 2.94 16 42 H 0.08 3.69 7.50 -2.39 -0.02 3.67 16 43 H 0.13 3.92 8.14 -2.39 -0.02 3.90 16 44 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.07 1.58 8.13 -2.39 -0.02 1.56 16 46 H 0.05 1.42 8.13 -2.38 -0.02 1.40 16 Total: -1.00 -70.16 384.92 6.39 -63.77 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: 0.99 Total: 35.23 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 6.49 Total: 16.94 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -1.37 Total: -70.34 kcal Atomic # 8 Polarization: -85.94 SS G_CDS: -1.75 Total: -87.68 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.08 kcal Total: -70.16 6.39 -63.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909558284.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.456 kcal (2) G-P(sol) polarization free energy of solvation -70.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds