Wall clock time and date at job start Tue Mar 31 2020 19:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00345 * 2 1 4 4 O 1.42897 * 109.61237 * 305.29706 * 3 2 1 5 5 C 1.42907 * 113.99917 * 300.61345 * 4 3 2 6 6 C 1.53170 * 109.54404 * 185.07204 * 3 2 1 7 7 C 1.53095 * 109.16202 * 183.15330 * 6 3 2 8 8 O 1.42906 * 109.41296 * 57.60596 * 7 6 3 9 9 C 1.42899 * 114.09834 * 298.84023 * 8 7 6 10 10 C 1.53089 * 109.41407 * 61.16390 * 9 8 7 11 11 H 1.08998 * 109.52679 * 182.42310 * 10 9 8 12 12 N 1.46500 * 109.52733 * 62.29391 * 10 9 8 13 13 C 1.34772 * 120.00082 * 84.99413 * 12 10 9 14 14 O 1.21609 * 120.00254 * 0.02562 * 13 12 10 15 15 C 1.47436 * 120.00249 * 180.02562 * 13 12 10 16 16 C 1.39228 * 120.28161 * 3.32707 * 15 13 12 17 17 C 1.38217 * 120.09342 * 180.02562 * 16 15 13 18 18 C 1.38822 * 120.67418 * 359.95089 * 17 16 15 19 19 C 1.37593 * 120.57510 * 359.76780 * 18 17 16 20 20 C 1.40715 * 119.87722 * 0.53514 * 19 18 17 21 21 C 1.40889 * 120.32517 * 179.72279 * 20 19 18 22 22 H 1.07997 * 119.99860 * 143.61087 * 21 20 19 23 23 C 1.40268 * 120.00245 * 323.60109 * 21 20 19 24 24 N 1.30638 * 119.99899 * 351.76089 * 23 21 20 25 25 Si 1.86796 * 120.00153 * 171.75627 * 23 21 20 26 26 H 1.48507 * 109.46914 * 180.02562 * 25 23 21 27 27 H 1.48501 * 109.47139 * 300.00047 * 25 23 21 28 28 H 1.48494 * 109.47211 * 60.00517 * 25 23 21 29 29 H 1.08997 * 109.47373 * 61.75866 * 1 2 3 30 30 H 1.09004 * 109.47081 * 181.75922 * 1 2 3 31 31 H 1.08998 * 109.46941 * 301.75401 * 1 2 3 32 32 H 1.08997 * 109.47262 * 180.53333 * 5 4 3 33 33 H 1.08998 * 109.47027 * 300.54379 * 5 4 3 34 34 H 1.09005 * 109.46976 * 60.53950 * 5 4 3 35 35 H 1.08998 * 109.52860 * 63.24895 * 6 3 2 36 36 H 1.09008 * 109.57417 * 303.08603 * 6 3 2 37 37 H 1.09000 * 109.48015 * 297.62692 * 7 6 3 38 38 H 1.08996 * 109.49293 * 177.59530 * 7 6 3 39 39 H 1.08993 * 109.48194 * 301.17916 * 9 8 7 40 40 H 1.09001 * 109.47685 * 181.14019 * 9 8 7 41 41 H 0.97000 * 119.99999 * 265.00519 * 12 10 9 42 42 H 1.08003 * 119.95192 * 359.97438 * 16 15 13 43 43 H 1.08001 * 119.65838 * 179.97438 * 17 16 15 44 44 H 1.08002 * 119.71442 * 180.02562 * 18 17 16 45 45 H 1.07992 * 120.06733 * 180.27994 * 19 18 17 46 46 H 0.97000 * 120.00064 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 1.4949 2.0600 -1.0986 5 6 1.7505 1.4742 -2.3768 6 6 3.5322 1.1886 -0.1276 7 6 4.1520 2.5862 -0.0475 8 8 3.7731 3.2040 1.1842 9 6 2.3637 3.3825 1.3381 10 6 1.6722 2.0169 1.3137 11 1 0.5933 2.1535 1.3878 12 7 2.1420 1.2099 2.4425 13 6 1.5599 1.3382 3.6512 14 8 0.6442 2.1236 3.8048 15 6 2.0331 0.5265 4.7874 16 6 3.1253 -0.3236 4.6361 17 6 3.5653 -1.0832 5.7037 18 6 2.9292 -1.0094 6.9354 19 6 1.8509 -0.1743 7.1172 20 6 1.3790 0.6049 6.0447 21 6 0.2720 1.4589 6.2188 22 1 0.2423 2.4138 5.7153 23 6 -0.7915 1.0687 7.0459 24 7 -0.8345 -0.1457 7.5256 25 14 -2.1464 2.2856 7.4617 26 1 -3.1447 1.6318 8.3457 27 1 -1.5612 3.4587 8.1592 28 1 -2.8103 2.7335 6.2112 29 1 -0.3634 0.4863 -0.9053 30 1 -0.3633 -1.0272 0.0315 31 1 -0.3633 0.5408 0.8738 32 1 1.3362 2.1116 -3.1580 33 1 2.8261 1.3738 -2.5220 34 1 1.2839 0.4902 -2.4254 35 1 3.7837 0.7331 -1.0854 36 1 3.9203 0.5711 0.6825 37 1 3.7954 3.1903 -0.8819 38 1 5.2379 2.5058 -0.0949 39 1 1.9838 3.9969 0.5219 40 1 2.1615 3.8754 2.2890 41 1 2.8723 0.5833 2.3200 42 1 3.6289 -0.3902 3.6830 43 1 4.4130 -1.7407 5.5785 44 1 3.2863 -1.6096 7.7592 45 1 1.3650 -0.1199 8.0801 46 1 -1.5698 -0.4154 8.0978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912856983.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:35 Heat of formation + Delta-G solvation = -162.657949 kcal Electronic energy + Delta-G solvation = -30874.003630 eV Core-core repulsion = 26728.203767 eV Total energy + Delta-G solvation = -4145.799863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.99427 -40.39489 -38.92276 -38.45782 -37.10208 -35.77785 -35.18521 -32.74503 -32.21604 -31.62159 -30.38438 -28.12903 -27.73636 -27.27007 -25.15326 -24.73161 -23.80761 -22.73858 -21.46467 -20.67571 -19.44619 -18.78578 -18.53380 -17.63549 -17.40691 -17.26020 -17.06793 -16.65339 -16.12659 -15.97519 -15.86271 -15.55889 -15.23912 -15.06242 -15.00549 -14.79971 -14.68185 -14.47676 -13.92669 -13.73252 -13.64421 -13.38455 -12.98320 -12.88653 -12.85898 -12.84712 -12.71656 -12.45780 -12.30819 -11.93119 -11.75376 -11.72294 -11.48754 -11.13468 -11.09475 -10.94306 -10.91986 -10.26219 -9.89174 -9.39382 -9.20338 -8.66424 -6.36288 0.51310 1.02406 1.33085 1.44475 1.50544 1.92343 2.21277 2.32989 2.45738 2.76206 2.82525 2.91281 3.40706 3.52900 3.69449 3.78970 4.09445 4.22245 4.28455 4.31118 4.35608 4.36873 4.38419 4.40373 4.49122 4.51993 4.59900 4.65541 4.73242 4.74333 4.81970 4.86069 4.92915 5.01611 5.09444 5.24343 5.34215 5.46103 5.54441 5.61836 5.82261 6.04559 6.10919 6.15258 6.21843 6.35021 6.62705 6.78481 6.91472 7.00469 7.62340 8.31769 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013785 B = 0.004009 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.738561 B = 6982.388637 C = 7740.693754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.394 6.394 3 C 0.270 3.730 4 O -0.401 6.401 5 C 0.021 3.979 6 C -0.166 4.166 7 C 0.062 3.938 8 O -0.388 6.388 9 C 0.065 3.935 10 C 0.108 3.892 11 H 0.075 0.925 12 N -0.706 5.706 13 C 0.566 3.434 14 O -0.576 6.576 15 C -0.277 4.277 16 C -0.054 4.054 17 C -0.233 4.233 18 C -0.091 4.091 19 C -0.174 4.174 20 C 0.119 3.881 21 C -0.462 4.462 22 H 0.085 0.915 23 C 0.033 3.967 24 N -0.825 5.825 25 Si 0.977 3.023 26 H -0.260 1.260 27 H -0.258 1.258 28 H -0.274 1.274 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.021 0.979 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.127 0.873 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.403 0.597 42 H 0.125 0.875 43 H 0.133 0.867 44 H 0.121 0.879 45 H 0.099 0.901 46 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.374 0.533 -18.030 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.314 6.314 3 C 0.192 3.808 4 O -0.322 6.322 5 C -0.074 4.074 6 C -0.204 4.204 7 C -0.015 4.015 8 O -0.307 6.307 9 C -0.013 4.013 10 C 0.001 3.999 11 H 0.094 0.906 12 N -0.361 5.361 13 C 0.360 3.640 14 O -0.457 6.457 15 C -0.282 4.282 16 C -0.073 4.073 17 C -0.252 4.252 18 C -0.110 4.110 19 C -0.194 4.194 20 C 0.115 3.885 21 C -0.491 4.491 22 H 0.103 0.897 23 C -0.182 4.182 24 N -0.451 5.451 25 Si 0.799 3.201 26 H -0.184 1.184 27 H -0.182 1.182 28 H -0.199 1.199 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.040 0.960 32 H 0.125 0.875 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.133 0.867 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.145 0.855 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.241 0.759 42 H 0.143 0.857 43 H 0.151 0.849 44 H 0.139 0.861 45 H 0.117 0.883 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.723 0.989 -17.639 18.903 hybrid contribution -1.072 -0.093 0.268 1.109 sum 5.651 0.896 -17.370 18.288 Atomic orbital electron populations 1.22738 0.79998 1.03437 1.00263 1.88004 1.21187 1.28112 1.94131 1.22664 0.92939 0.79406 0.85775 1.87987 1.79652 1.49003 1.15522 1.23016 1.01948 0.99394 0.83049 1.22676 0.90960 1.00727 1.06040 1.22811 1.01540 0.90528 0.86576 1.87974 1.21897 1.80783 1.40049 1.22810 0.81487 0.94675 1.02370 1.21539 1.00107 0.92471 0.85765 0.90646 1.45450 1.38635 1.44151 1.07821 1.18383 0.81076 0.81766 0.82754 1.90631 1.31253 1.39725 1.84137 1.19804 1.05990 1.08602 0.93759 1.21026 0.94029 0.93841 0.98395 1.20792 1.04535 1.06188 0.93661 1.21179 0.95060 0.97027 0.97718 1.21283 0.97966 1.01783 0.98328 1.17832 0.90902 0.89935 0.89807 1.20165 1.01874 1.04542 1.22540 0.89703 1.26771 1.01572 0.97049 0.92773 1.69738 1.31491 1.18318 1.25587 0.85333 0.77224 0.78955 0.78620 1.18357 1.18226 1.19891 0.91921 0.88190 0.96028 0.87484 0.91707 0.93445 0.86690 0.89537 0.91202 0.85497 0.90157 0.90507 0.75930 0.85685 0.84911 0.86086 0.88334 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.25 113.37 1.16 1.99 16 2 O -0.39 -10.66 9.49 -126.23 -1.20 -11.86 16 3 C 0.27 6.75 0.35 30.71 0.01 6.76 16 4 O -0.40 -8.91 8.51 -126.23 -1.07 -9.99 16 5 C 0.02 0.31 10.14 113.37 1.15 1.46 16 6 C -0.17 -3.19 4.84 30.68 0.15 -3.05 16 7 C 0.06 1.14 6.69 72.01 0.48 1.62 16 8 O -0.39 -10.82 10.67 -148.98 -1.59 -12.41 16 9 C 0.06 1.99 6.30 72.01 0.45 2.44 16 10 C 0.11 3.51 1.73 45.08 0.08 3.59 16 11 H 0.08 2.88 6.24 -2.39 -0.01 2.87 16 12 N -0.71 -26.13 4.68 -445.36 -2.08 -28.21 16 13 C 0.57 27.24 7.70 86.67 0.67 27.91 16 14 O -0.58 -31.71 13.20 -4.06 -0.05 -31.76 16 15 C -0.28 -13.90 5.92 -19.70 -0.12 -14.02 16 16 C -0.05 -2.26 9.53 22.50 0.21 -2.05 16 17 C -0.23 -9.30 10.03 22.40 0.22 -9.08 16 18 C -0.09 -4.02 10.01 22.26 0.22 -3.79 16 19 C -0.17 -9.12 8.61 22.72 0.20 -8.93 16 20 C 0.12 6.68 5.48 -21.11 -0.12 6.56 16 21 C -0.46 -27.05 7.73 23.41 0.18 -26.87 16 22 H 0.09 5.22 5.80 -2.91 -0.02 5.21 16 23 C 0.03 1.78 5.26 85.36 0.45 2.23 16 24 N -0.82 -44.73 11.25 21.88 0.25 -44.49 16 25 Si 0.98 42.43 29.57 68.60 2.03 44.45 16 26 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 27 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 28 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 29 H 0.06 1.40 6.91 -2.39 -0.02 1.39 16 30 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.02 0.69 6.56 -2.39 -0.02 0.67 16 32 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 33 H 0.06 0.70 6.35 -2.39 -0.02 0.69 16 34 H 0.05 0.72 7.02 -2.38 -0.02 0.70 16 35 H 0.11 1.58 6.41 -2.39 -0.02 1.56 16 36 H 0.09 1.77 6.73 -2.38 -0.02 1.76 16 37 H 0.07 1.13 7.82 -2.39 -0.02 1.11 16 38 H 0.13 1.68 8.14 -2.39 -0.02 1.67 16 39 H 0.08 2.15 7.82 -2.39 -0.02 2.13 16 40 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 41 H 0.40 13.21 5.12 -92.71 -0.47 12.74 16 42 H 0.13 4.20 6.41 -2.91 -0.02 4.18 16 43 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 44 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 45 H 0.10 5.37 6.74 -2.91 -0.02 5.35 16 46 H 0.29 14.18 8.29 -92.71 -0.77 13.41 16 Total: -1.00 -70.62 362.16 2.23 -68.38 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: 0.55 Total: 39.10 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 5.41 Total: -13.22 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -1.84 Total: -72.70 kcal Atomic # 8 Polarization: -62.10 SS G_CDS: -3.92 Total: -66.02 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -70.62 2.23 -68.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912856983.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.275 kcal (2) G-P(sol) polarization free energy of solvation -70.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds