Wall clock time and date at job start Tue Mar 31 2020 19:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 116.99876 * 2 1 4 4 O 1.20825 * 120.00248 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00194 * 179.97438 * 3 2 1 6 6 H 1.09004 * 110.34740 * 60.69008 * 5 3 2 7 7 C 1.53998 * 110.30709 * 298.55173 * 5 3 2 8 8 N 1.47900 * 107.05419 * 242.30601 * 7 5 3 9 9 C 1.46901 * 110.99996 * 214.15887 * 8 7 5 10 10 C 1.53002 * 109.47046 * 287.39708 * 9 8 7 11 11 H 1.09000 * 109.47378 * 59.99823 * 10 9 8 12 12 O 1.42898 * 109.46826 * 300.00017 * 10 9 8 13 13 C 1.50696 * 109.47390 * 179.97438 * 10 9 8 14 14 H 1.08005 * 119.99936 * 0.02562 * 13 10 9 15 15 C 1.37876 * 120.00056 * 180.02562 * 13 10 9 16 16 N 1.31515 * 120.00119 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 119.99986 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47082 * 89.99768 * 17 15 13 19 19 H 1.48499 * 109.46894 * 209.99872 * 17 15 13 20 20 H 1.48504 * 109.46765 * 329.99857 * 17 15 13 21 21 C 1.48536 * 105.82189 * 334.66788 * 8 7 5 22 22 C 1.54591 * 110.30876 * 182.83269 * 5 3 2 23 23 H 1.08990 * 110.72764 * 22.51673 * 22 5 3 24 24 C 1.50703 * 110.72320 * 259.23212 * 22 5 3 25 25 C 1.38270 * 119.94170 * 304.77275 * 24 22 5 26 26 C 1.38151 * 120.04970 * 179.72329 * 25 24 22 27 27 C 1.38724 * 119.94596 * 0.52783 * 26 25 24 28 28 O 1.35905 * 120.05878 * 179.72279 * 27 26 25 29 29 C 1.38736 * 119.89126 * 359.74921 * 27 26 25 30 30 C 1.38149 * 119.94058 * 359.97438 * 29 27 26 31 31 H 1.09003 * 109.47004 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47428 * 300.00007 * 1 2 3 33 33 H 1.09004 * 109.47011 * 60.00246 * 1 2 3 34 34 H 1.08998 * 109.91739 * 122.95433 * 7 5 3 35 35 H 1.08995 * 109.91697 * 1.65617 * 7 5 3 36 36 H 1.08996 * 109.47126 * 47.39533 * 9 8 7 37 37 H 1.08996 * 109.47465 * 167.39804 * 9 8 7 38 38 H 0.96697 * 114.00371 * 299.99761 * 12 10 9 39 39 H 0.96994 * 119.99589 * 180.02562 * 16 15 13 40 40 H 1.09004 * 110.66813 * 157.64005 * 21 8 7 41 41 H 1.09000 * 110.66721 * 280.77504 * 21 8 7 42 42 H 1.07997 * 119.97290 * 359.97438 * 25 24 22 43 43 H 1.08007 * 120.01949 * 180.29481 * 26 25 24 44 44 H 0.96704 * 113.99804 * 270.02578 * 28 27 26 45 45 H 1.07996 * 120.03002 * 180.02562 * 29 27 26 46 46 H 1.07997 * 119.96861 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9714 0.7950 -0.8903 7 6 4.1357 0.6139 1.2696 8 7 4.8480 1.6671 2.0250 9 6 6.0220 1.1170 2.7156 10 6 5.5638 0.2669 3.9024 11 1 4.9373 -0.5498 3.5439 12 8 4.8150 1.0790 4.8089 13 6 6.7680 -0.2980 4.6105 14 1 7.7611 -0.0729 4.2504 15 6 6.6022 -1.1022 5.7181 16 7 5.3930 -1.3759 6.1569 17 14 8.0951 -1.8019 6.5963 18 1 8.5338 -0.8580 7.6554 19 1 7.7412 -3.1063 7.2114 20 1 9.1970 -1.9975 5.6202 21 6 5.2499 2.6846 1.0203 22 6 4.0262 2.7492 0.0721 23 1 3.2428 3.3775 0.4956 24 6 4.4333 3.2475 -1.2906 25 6 5.3956 2.5683 -2.0148 26 6 5.7663 3.0199 -3.2667 27 6 5.1801 4.1620 -3.7924 28 8 5.5472 4.6115 -5.0213 29 6 4.2189 4.8450 -3.0614 30 6 3.8475 4.3861 -1.8124 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 4.8300 -0.1802 0.9950 35 1 3.3238 0.2086 1.8733 36 1 6.5932 0.4976 2.0241 37 1 6.6485 1.9337 3.0742 38 1 5.3110 1.8271 5.1685 39 1 5.2764 -1.9414 6.9363 40 1 5.4185 3.6503 1.4970 41 1 6.1391 2.3609 0.4794 42 1 5.8549 1.6817 -1.6031 43 1 6.5146 2.4862 -3.8339 44 1 6.2856 5.2357 -5.0074 45 1 3.7608 5.7341 -3.4687 46 1 3.0990 4.9171 -1.2431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930592498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:13 Heat of formation + Delta-G solvation = -144.092421 kcal Electronic energy + Delta-G solvation = -29290.448298 eV Core-core repulsion = 25145.453497 eV Total energy + Delta-G solvation = -4144.994801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.94721 -39.91245 -38.64197 -36.92035 -36.42202 -35.39575 -32.52673 -32.05143 -31.20974 -30.58800 -28.68647 -27.46637 -27.12630 -24.69077 -23.41726 -23.01185 -22.08014 -21.11089 -20.31846 -19.54446 -18.65218 -17.64034 -17.09895 -16.96651 -16.42084 -16.06029 -15.72768 -15.44008 -14.92886 -14.65218 -14.60140 -14.30172 -13.87361 -13.68475 -13.58459 -13.44359 -13.17079 -12.97079 -12.86467 -12.50941 -12.30559 -12.16686 -12.04991 -11.74126 -11.46733 -11.12623 -11.09396 -10.94570 -10.91385 -10.79043 -10.77471 -10.66066 -10.57520 -10.21225 -10.05766 -9.18597 -9.02404 -8.65175 -8.58071 -8.14511 -7.81162 -6.00464 -4.19344 0.98917 1.15745 2.23938 2.70240 3.27012 3.34246 3.36053 3.37506 3.96972 4.18860 4.40035 4.41035 4.61087 4.73292 4.77316 4.83986 4.98820 5.06815 5.14642 5.17020 5.18687 5.27122 5.27897 5.40328 5.48065 5.49599 5.64432 5.77283 5.79763 5.94187 5.96668 6.05747 6.11684 6.20443 6.21214 6.25108 6.38361 6.48973 6.53625 6.60532 6.77106 7.22804 7.39119 7.45705 7.74692 7.76689 7.85904 8.19138 8.84580 9.46795 9.63112 11.03552 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012436 B = 0.003044 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.065954 B = 9196.886796 C =10756.545287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.477 3.523 4 O -0.505 6.505 5 C -0.088 4.088 6 H 0.112 0.888 7 C 0.052 3.948 8 N -0.501 5.501 9 C 0.021 3.979 10 C 0.239 3.761 11 H 0.053 0.947 12 O -0.554 6.554 13 C -0.575 4.575 14 H 0.054 0.946 15 C 0.080 3.920 16 N -0.857 5.857 17 Si 0.888 3.112 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.042 3.958 22 C -0.041 4.041 23 H 0.111 0.889 24 C -0.077 4.077 25 C -0.100 4.100 26 C -0.143 4.143 27 C 0.097 3.903 28 O -0.502 6.502 29 C -0.144 4.144 30 C -0.089 4.089 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.032 0.968 37 H 0.066 0.934 38 H 0.342 0.658 39 H 0.260 0.740 40 H 0.086 0.914 41 H 0.046 0.954 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.388 0.612 45 H 0.127 0.873 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.885 8.960 -18.817 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.319 3.681 4 O -0.392 6.392 5 C -0.107 4.107 6 H 0.130 0.870 7 C -0.076 4.076 8 N -0.225 5.225 9 C -0.106 4.106 10 C 0.181 3.819 11 H 0.071 0.929 12 O -0.355 6.355 13 C -0.614 4.614 14 H 0.072 0.928 15 C -0.126 4.126 16 N -0.493 5.493 17 Si 0.716 3.284 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.086 4.086 22 C -0.060 4.060 23 H 0.129 0.871 24 C -0.078 4.078 25 C -0.118 4.118 26 C -0.161 4.161 27 C 0.052 3.948 28 O -0.312 6.312 29 C -0.163 4.163 30 C -0.107 4.107 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.185 0.815 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.244 0.756 45 H 0.145 0.855 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.495 8.548 -18.603 20.961 hybrid contribution 2.047 -0.149 0.057 2.053 sum -2.448 8.399 -18.547 20.506 Atomic orbital electron populations 1.23263 0.76401 1.03683 1.02445 1.86521 1.23379 1.33309 1.83991 1.23432 0.91661 0.81325 0.71646 1.90623 1.66942 1.36324 1.45287 1.22125 0.87984 0.98494 1.02126 0.87019 1.22815 0.99563 0.94130 0.91105 1.64905 1.24225 1.10413 1.22964 1.23320 0.90148 0.98812 0.98334 1.19272 0.91166 0.87644 0.83849 0.92921 1.86569 1.42447 1.42527 1.63978 1.21645 0.93061 1.32632 1.14049 0.92750 1.25021 0.95492 0.95246 0.96851 1.70082 1.20638 1.35113 1.23443 0.86687 0.83217 0.78573 0.79956 1.20528 1.21136 1.19896 1.23356 0.94687 0.98153 0.92375 1.21106 0.99128 0.93876 0.91890 0.87080 1.19787 0.96606 0.95653 0.95718 1.20951 0.96996 0.99980 0.93889 1.21377 1.01266 0.97614 0.95867 1.18486 0.96705 0.94550 0.85015 1.84825 1.55586 1.65343 1.25409 1.21411 0.99295 1.00870 0.94693 1.21012 0.99015 0.95775 0.94905 0.88108 0.91669 0.92167 0.92201 0.89235 0.94946 0.91520 0.81458 0.92987 0.89564 0.93593 0.85460 0.85441 0.75595 0.85481 0.85220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -4.93 10.48 -39.26 -0.41 -5.34 16 3 C 0.48 7.06 7.05 36.01 0.25 7.31 16 4 O -0.50 -8.32 15.19 -18.75 -0.28 -8.60 16 5 C -0.09 -1.18 2.95 -90.41 -0.27 -1.44 16 6 H 0.11 1.29 6.82 -51.93 -0.35 0.93 16 7 C 0.05 0.84 5.56 -2.75 -0.02 0.82 16 8 N -0.50 -8.65 5.11 -230.45 -1.18 -9.83 16 9 C 0.02 0.42 4.39 -3.82 -0.02 0.40 16 10 C 0.24 5.90 2.86 -27.88 -0.08 5.82 16 11 H 0.05 1.44 7.62 -51.93 -0.40 1.04 16 12 O -0.55 -14.31 12.60 -35.23 -0.44 -14.76 16 13 C -0.58 -15.43 8.76 -34.44 -0.30 -15.74 16 14 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 15 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 16 N -0.86 -25.17 12.84 55.43 0.71 -24.45 16 17 Si 0.89 20.87 29.54 -169.99 -5.02 15.84 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 C 0.04 0.58 5.91 -1.89 -0.01 0.57 16 22 C -0.04 -0.53 2.61 -89.91 -0.23 -0.77 16 23 H 0.11 1.59 6.72 -51.93 -0.35 1.24 16 24 C -0.08 -0.88 4.95 -104.60 -0.52 -1.40 16 25 C -0.10 -1.05 8.11 -39.60 -0.32 -1.38 16 26 C -0.14 -1.42 9.99 -39.43 -0.39 -1.82 16 27 C 0.10 0.98 6.70 -39.22 -0.26 0.72 16 28 O -0.50 -4.45 13.50 -19.44 -0.26 -4.71 16 29 C -0.14 -1.45 9.99 -39.43 -0.39 -1.85 16 30 C -0.09 -0.97 9.68 -39.61 -0.38 -1.35 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 34 H 0.06 0.93 7.52 -51.93 -0.39 0.54 16 35 H 0.09 1.62 7.63 -51.93 -0.40 1.23 16 36 H 0.03 0.61 7.73 -51.93 -0.40 0.21 16 37 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 38 H 0.34 7.95 9.04 45.56 0.41 8.36 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.59 6.92 -51.93 -0.36 0.23 16 42 H 0.13 1.23 7.26 -52.49 -0.38 0.84 16 43 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 44 H 0.39 1.54 9.06 45.56 0.41 1.95 16 45 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.13 1.32 7.98 -52.49 -0.42 0.90 16 LS Contribution 383.17 15.07 5.77 5.77 Total: -1.00 -33.59 383.17 -8.21 -41.80 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.12 Total: 10.80 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -1.97 Total: -6.53 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: -0.47 Total: -34.28 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -1.40 Total: -33.41 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.59 -8.21 -41.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930592498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.291 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds