Wall clock time and date at job start Tue Mar 31 2020 19:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 116.99876 * 2 1 4 4 O 1.20825 * 120.00248 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00194 * 179.97438 * 3 2 1 6 6 H 1.09004 * 110.34740 * 60.69008 * 5 3 2 7 7 C 1.53998 * 110.30709 * 298.55173 * 5 3 2 8 8 N 1.47900 * 107.05419 * 242.30601 * 7 5 3 9 9 C 1.46901 * 110.99996 * 214.15887 * 8 7 5 10 10 C 1.53002 * 109.47046 * 287.39708 * 9 8 7 11 11 H 1.09000 * 109.47378 * 59.99823 * 10 9 8 12 12 O 1.42898 * 109.46826 * 300.00017 * 10 9 8 13 13 C 1.50696 * 109.47390 * 179.97438 * 10 9 8 14 14 H 1.08005 * 119.99936 * 0.02562 * 13 10 9 15 15 C 1.37876 * 120.00056 * 180.02562 * 13 10 9 16 16 N 1.31515 * 120.00119 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 119.99986 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47082 * 89.99768 * 17 15 13 19 19 H 1.48499 * 109.46894 * 209.99872 * 17 15 13 20 20 H 1.48504 * 109.46765 * 329.99857 * 17 15 13 21 21 C 1.48536 * 105.82189 * 334.66788 * 8 7 5 22 22 C 1.54591 * 110.30876 * 182.83269 * 5 3 2 23 23 H 1.08990 * 110.72764 * 22.51673 * 22 5 3 24 24 C 1.50703 * 110.72320 * 259.23212 * 22 5 3 25 25 C 1.38270 * 119.94170 * 304.77275 * 24 22 5 26 26 C 1.38151 * 120.04970 * 179.72329 * 25 24 22 27 27 C 1.38724 * 119.94596 * 0.52783 * 26 25 24 28 28 O 1.35905 * 120.05878 * 179.72279 * 27 26 25 29 29 C 1.38736 * 119.89126 * 359.74921 * 27 26 25 30 30 C 1.38149 * 119.94058 * 359.97438 * 29 27 26 31 31 H 1.09003 * 109.47004 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47428 * 300.00007 * 1 2 3 33 33 H 1.09004 * 109.47011 * 60.00246 * 1 2 3 34 34 H 1.08998 * 109.91739 * 122.95433 * 7 5 3 35 35 H 1.08995 * 109.91697 * 1.65617 * 7 5 3 36 36 H 1.08996 * 109.47126 * 47.39533 * 9 8 7 37 37 H 1.08996 * 109.47465 * 167.39804 * 9 8 7 38 38 H 0.96697 * 114.00371 * 299.99761 * 12 10 9 39 39 H 0.96994 * 119.99589 * 180.02562 * 16 15 13 40 40 H 1.09004 * 110.66813 * 157.64005 * 21 8 7 41 41 H 1.09000 * 110.66721 * 280.77504 * 21 8 7 42 42 H 1.07997 * 119.97290 * 359.97438 * 25 24 22 43 43 H 1.08007 * 120.01949 * 180.29481 * 26 25 24 44 44 H 0.96704 * 113.99804 * 270.02578 * 28 27 26 45 45 H 1.07996 * 120.03002 * 180.02562 * 29 27 26 46 46 H 1.07997 * 119.96861 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9714 0.7950 -0.8903 7 6 4.1357 0.6139 1.2696 8 7 4.8480 1.6671 2.0250 9 6 6.0220 1.1170 2.7156 10 6 5.5638 0.2669 3.9024 11 1 4.9373 -0.5498 3.5439 12 8 4.8150 1.0790 4.8089 13 6 6.7680 -0.2980 4.6105 14 1 7.7611 -0.0729 4.2504 15 6 6.6022 -1.1022 5.7181 16 7 5.3930 -1.3759 6.1569 17 14 8.0951 -1.8019 6.5963 18 1 8.5338 -0.8580 7.6554 19 1 7.7412 -3.1063 7.2114 20 1 9.1970 -1.9975 5.6202 21 6 5.2499 2.6846 1.0203 22 6 4.0262 2.7492 0.0721 23 1 3.2428 3.3775 0.4956 24 6 4.4333 3.2475 -1.2906 25 6 5.3956 2.5683 -2.0148 26 6 5.7663 3.0199 -3.2667 27 6 5.1801 4.1620 -3.7924 28 8 5.5472 4.6115 -5.0213 29 6 4.2189 4.8450 -3.0614 30 6 3.8475 4.3861 -1.8124 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 4.8300 -0.1802 0.9950 35 1 3.3238 0.2086 1.8733 36 1 6.5932 0.4976 2.0241 37 1 6.6485 1.9337 3.0742 38 1 5.3110 1.8271 5.1685 39 1 5.2764 -1.9414 6.9363 40 1 5.4185 3.6503 1.4970 41 1 6.1391 2.3609 0.4794 42 1 5.8549 1.6817 -1.6031 43 1 6.5146 2.4862 -3.8339 44 1 6.2856 5.2357 -5.0074 45 1 3.7608 5.7341 -3.4687 46 1 3.0990 4.9171 -1.2431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930592498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:11 Heat of formation + Delta-G solvation = -169.667619 kcal Electronic energy + Delta-G solvation = -29291.557322 eV Core-core repulsion = 25145.453497 eV Total energy + Delta-G solvation = -4146.103825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.04724 -40.78703 -39.75338 -38.01739 -37.50854 -37.03737 -34.21373 -33.75492 -31.96991 -31.63396 -30.21253 -28.47511 -28.40761 -26.38850 -24.44011 -23.92734 -23.33779 -22.27777 -21.74730 -20.71413 -19.35622 -19.02441 -18.73805 -18.07960 -17.60862 -17.03313 -16.65230 -16.62650 -16.35125 -16.17586 -16.02625 -15.66199 -15.14513 -14.99682 -14.61532 -14.38518 -14.34994 -14.31325 -13.98411 -13.82833 -13.51830 -13.14478 -13.07677 -12.97828 -12.94015 -12.79364 -12.63781 -12.39588 -12.24194 -12.11125 -11.95434 -11.93179 -11.82153 -11.46632 -11.34197 -10.97537 -10.68109 -10.06739 -9.94790 -9.45962 -9.22069 -8.09973 -6.35959 0.21256 0.39281 1.07210 1.42969 1.43194 1.53864 1.68045 2.40590 2.60380 2.98576 3.16702 3.30529 3.33448 3.53990 3.71062 3.94741 3.96221 4.05562 4.10815 4.24717 4.28276 4.30352 4.33521 4.37367 4.42377 4.45013 4.53641 4.63949 4.66924 4.71698 4.86243 4.90866 4.93144 5.01752 5.07701 5.11757 5.30815 5.33524 5.45863 5.61868 5.66000 5.76123 5.87487 5.97042 6.04663 6.19809 6.63440 6.78129 6.87443 7.38678 7.67007 8.94428 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012436 B = 0.003044 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.065954 B = 9196.886796 C =10756.545287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.474 3.526 4 O -0.526 6.526 5 C -0.079 4.079 6 H 0.136 0.864 7 C 0.055 3.945 8 N -0.521 5.521 9 C 0.041 3.959 10 C 0.237 3.763 11 H 0.017 0.983 12 O -0.573 6.573 13 C -0.585 4.585 14 H 0.062 0.938 15 C 0.025 3.975 16 N -0.901 5.901 17 Si 0.959 3.041 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.262 1.262 21 C 0.047 3.953 22 C -0.029 4.029 23 H 0.093 0.907 24 C -0.088 4.088 25 C -0.101 4.101 26 C -0.147 4.147 27 C 0.098 3.902 28 O -0.511 6.511 29 C -0.150 4.150 30 C -0.097 4.097 31 H 0.130 0.870 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.041 0.959 37 H 0.074 0.926 38 H 0.352 0.648 39 H 0.260 0.740 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.137 0.863 43 H 0.144 0.856 44 H 0.410 0.590 45 H 0.141 0.859 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 9.378 -20.554 22.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.317 3.683 4 O -0.415 6.415 5 C -0.099 4.099 6 H 0.154 0.846 7 C -0.073 4.073 8 N -0.245 5.245 9 C -0.087 4.087 10 C 0.179 3.821 11 H 0.035 0.965 12 O -0.376 6.376 13 C -0.624 4.624 14 H 0.080 0.920 15 C -0.178 4.178 16 N -0.538 5.538 17 Si 0.784 3.216 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.187 1.187 21 C -0.080 4.080 22 C -0.048 4.048 23 H 0.111 0.889 24 C -0.089 4.089 25 C -0.119 4.119 26 C -0.165 4.165 27 C 0.054 3.946 28 O -0.324 6.324 29 C -0.168 4.168 30 C -0.115 4.115 31 H 0.148 0.852 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.196 0.804 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.155 0.845 43 H 0.162 0.838 44 H 0.269 0.731 45 H 0.159 0.841 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.810 8.985 -20.361 22.432 hybrid contribution 1.460 -0.240 0.528 1.571 sum -1.351 8.745 -19.833 21.717 Atomic orbital electron populations 1.23555 0.74720 1.05711 1.02519 1.86512 1.25162 1.32849 1.83600 1.23693 0.92217 0.81297 0.71063 1.90607 1.67513 1.36984 1.46395 1.22122 0.87215 0.98958 1.01583 0.84634 1.22679 0.98721 0.94276 0.91630 1.64744 1.23600 1.11285 1.24888 1.22890 0.90789 0.98301 0.96731 1.19158 0.89740 0.87716 0.85446 0.96514 1.86515 1.43245 1.43089 1.64748 1.22067 0.93992 1.32233 1.14065 0.91950 1.25903 0.98292 0.95697 0.97864 1.70234 1.23080 1.36315 1.24153 0.85573 0.79664 0.77599 0.78797 1.19969 1.21184 1.18657 1.23382 0.95689 0.97134 0.91774 1.20908 0.98077 0.93090 0.92718 0.88868 1.19648 0.97748 0.96410 0.95086 1.21057 0.96619 1.00143 0.94084 1.21574 1.01525 0.97632 0.95759 1.18605 0.96382 0.94510 0.85145 1.84768 1.56803 1.66097 1.24728 1.21573 0.99393 1.01431 0.94397 1.21096 0.99164 0.95815 0.95442 0.85189 0.92473 0.91240 0.91665 0.92292 0.94119 0.90729 0.80377 0.93130 0.89087 0.91831 0.84478 0.83819 0.73050 0.84117 0.85225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.37 -10.12 10.48 -51.44 -0.54 -10.65 16 3 C 0.47 14.10 7.05 71.24 0.50 14.60 16 4 O -0.53 -17.55 15.19 21.97 0.33 -17.22 16 5 C -0.08 -2.09 2.95 -10.66 -0.03 -2.12 16 6 H 0.14 2.90 6.82 -2.38 -0.02 2.88 16 7 C 0.06 1.79 5.56 86.45 0.48 2.27 16 8 N -0.52 -17.90 5.11 -883.00 -4.51 -22.42 16 9 C 0.04 1.58 4.39 86.30 0.38 1.96 16 10 C 0.24 11.94 2.86 29.85 0.09 12.02 16 11 H 0.02 0.96 7.62 -2.39 -0.02 0.95 16 12 O -0.57 -30.35 12.60 -148.98 -1.88 -32.23 16 13 C -0.59 -31.40 8.76 25.60 0.22 -31.17 16 14 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 15 C 0.02 1.37 5.40 84.65 0.46 1.83 16 16 N -0.90 -53.97 12.84 21.45 0.28 -53.70 16 17 Si 0.96 42.75 29.54 68.60 2.03 44.78 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 21 C 0.05 1.24 5.91 86.65 0.51 1.75 16 22 C -0.03 -0.72 2.61 -10.33 -0.03 -0.75 16 23 H 0.09 2.69 6.72 -2.39 -0.02 2.68 16 24 C -0.09 -1.90 4.95 -19.85 -0.10 -1.99 16 25 C -0.10 -1.89 8.11 22.26 0.18 -1.71 16 26 C -0.15 -2.54 9.99 22.37 0.22 -2.31 16 27 C 0.10 1.75 6.70 22.51 0.15 1.90 16 28 O -0.51 -7.68 13.50 -92.48 -1.25 -8.93 16 29 C -0.15 -2.74 9.99 22.37 0.22 -2.52 16 30 C -0.10 -2.00 9.68 22.25 0.22 -1.79 16 31 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 33 H 0.07 1.31 8.13 -2.38 -0.02 1.29 16 34 H 0.07 2.01 7.52 -2.39 -0.02 2.00 16 35 H 0.06 2.25 7.63 -2.39 -0.02 2.23 16 36 H 0.04 1.49 7.73 -2.39 -0.02 1.47 16 37 H 0.07 2.74 8.08 -2.39 -0.02 2.72 16 38 H 0.35 16.62 9.04 -74.06 -0.67 15.95 16 39 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 40 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 41 H 0.06 1.47 6.92 -2.39 -0.02 1.45 16 42 H 0.14 2.25 7.26 -2.91 -0.02 2.23 16 43 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 44 H 0.41 2.09 9.06 -74.05 -0.67 1.42 16 45 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 46 H 0.13 2.59 7.98 -2.91 -0.02 2.56 16 Total: -1.00 -72.60 383.17 -1.19 -73.79 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: -0.32 Total: 32.83 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 4.67 Total: -6.26 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -4.24 Total: -76.11 kcal Atomic # 8 Polarization: -65.70 SS G_CDS: -3.33 Total: -69.03 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -72.60 -1.19 -73.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930592498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.877 kcal (2) G-P(sol) polarization free energy of solvation -72.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds