Wall clock time and date at job start Tue Mar 31 2020 18:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 116.99691 * 2 1 4 4 O 1.20828 * 120.00411 * 359.97438 * 3 2 1 5 5 C 1.50709 * 119.99761 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.46909 * 179.97438 * 5 3 2 7 7 N 1.46499 * 109.47066 * 179.97438 * 6 5 3 8 8 C 1.36936 * 120.00257 * 90.00054 * 7 6 5 9 9 H 1.08000 * 119.99409 * 323.07866 * 8 7 6 10 10 C 1.38810 * 120.00322 * 143.06872 * 8 7 6 11 11 N 1.31618 * 120.00128 * 155.73121 * 10 8 7 12 12 Si 1.86805 * 119.99989 * 335.73463 * 10 8 7 13 13 H 1.48501 * 109.47149 * 95.32943 * 12 10 8 14 14 H 1.48493 * 109.47234 * 215.33426 * 12 10 8 15 15 H 1.48501 * 109.46983 * 335.33376 * 12 10 8 16 16 C 1.46500 * 120.00025 * 270.00441 * 7 6 5 17 17 C 1.53004 * 109.47150 * 84.37090 * 16 7 6 18 18 H 1.08997 * 110.66486 * 297.65833 * 17 16 7 19 19 C 1.54703 * 110.75082 * 174.24011 * 17 16 7 20 20 C 1.51650 * 101.94336 * 216.37692 * 19 17 16 21 21 C 1.37742 * 132.11378 * 195.91772 * 20 19 17 22 22 C 1.38769 * 119.93717 * 179.01267 * 21 20 19 23 23 O 1.35983 * 120.17436 * 179.97438 * 22 21 20 24 24 C 1.42898 * 117.00191 * 180.02562 * 23 22 21 25 25 C 1.38719 * 119.65185 * 359.97438 * 22 21 20 26 26 C 1.37908 * 120.29097 * 0.18024 * 25 22 21 27 27 C 1.38862 * 107.05239 * 15.36404 * 20 19 17 28 28 O 1.36246 * 111.20882 * 1.11960 * 27 20 19 29 29 H 1.08997 * 109.47200 * 59.99755 * 1 2 3 30 30 H 1.08998 * 109.46963 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47179 * 300.00027 * 1 2 3 32 32 H 1.09002 * 109.47048 * 59.99901 * 5 3 2 33 33 H 1.08996 * 109.46768 * 299.99620 * 5 3 2 34 34 H 1.09002 * 109.46917 * 60.00347 * 6 5 3 35 35 H 1.08998 * 109.47617 * 300.00459 * 6 5 3 36 36 H 0.97003 * 119.99682 * 179.97438 * 11 10 8 37 37 H 1.09005 * 109.47272 * 204.37206 * 16 7 6 38 38 H 1.09000 * 109.47477 * 324.37192 * 16 7 6 39 39 H 1.09001 * 110.93619 * 334.53518 * 19 17 16 40 40 H 1.08999 * 110.93731 * 98.21230 * 19 17 16 41 41 H 1.08001 * 120.02805 * 359.03638 * 21 20 19 42 42 H 1.08999 * 109.47562 * 59.99337 * 24 23 22 43 43 H 1.08995 * 109.47234 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.47056 * 299.99757 * 24 23 22 45 45 H 1.08008 * 119.85168 * 180.19664 * 25 22 21 46 46 H 1.08007 * 119.84126 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7421 -0.0011 7 7 5.4630 2.8189 -0.0011 8 6 6.1469 2.8543 -1.1869 9 1 5.7993 2.2731 -2.0282 10 6 7.2867 3.6373 -1.3077 11 7 8.1967 3.3400 -2.2110 12 14 7.5291 5.1130 -0.1883 13 1 8.3617 4.7192 0.9766 14 1 8.2103 6.1977 -0.9397 15 1 6.2078 5.5952 0.2881 16 6 6.1945 2.8576 1.2677 17 6 6.4019 1.4311 1.7806 18 1 5.4440 0.9510 1.9802 19 6 7.2952 1.4272 3.0436 20 6 8.1038 0.1586 2.8523 21 6 8.8697 -0.5883 3.7199 22 6 9.4979 -1.7417 3.2719 23 8 10.2556 -2.4824 4.1242 24 6 10.8719 -3.6563 3.5912 25 6 9.3490 -2.1350 1.9500 26 6 8.5842 -1.3836 1.0826 27 6 7.9554 -0.2226 1.5253 28 8 7.1728 0.6600 0.8435 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.9557 0.7810 -0.8908 33 1 3.9563 0.7807 0.8892 34 1 3.6107 3.2364 0.8890 35 1 3.6099 3.2361 -0.8910 36 1 8.9930 3.8874 -2.2956 37 1 7.1633 3.3330 1.1142 38 1 5.6221 3.4272 1.9998 39 1 7.9438 2.3030 3.0647 40 1 6.6901 1.3706 3.9485 41 1 8.9807 -0.2768 4.7480 42 1 11.5374 -3.3782 2.7739 43 1 11.4450 -4.1531 4.3739 44 1 10.1029 -4.3334 3.2191 45 1 9.8340 -3.0338 1.5986 46 1 8.4729 -1.6968 0.0550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931537602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:09 Heat of formation + Delta-G solvation = -114.357127 kcal Electronic energy + Delta-G solvation = -29401.689403 eV Core-core repulsion = 25257.984021 eV Total energy + Delta-G solvation = -4143.705382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.06321 -41.44388 -40.29409 -38.25907 -37.45061 -36.85477 -34.06902 -33.79497 -32.37895 -31.00093 -30.40163 -28.64012 -27.86189 -27.17255 -26.11886 -23.64605 -23.05092 -22.55885 -22.17461 -21.44306 -19.07344 -18.79462 -18.47920 -18.34227 -17.85330 -17.55084 -17.40267 -16.96042 -16.64408 -16.33466 -15.91770 -15.51132 -15.27328 -15.05039 -14.75075 -14.48783 -14.36460 -14.18393 -14.14670 -13.81805 -13.73682 -13.61580 -13.41097 -13.21450 -12.90135 -12.85440 -12.73422 -12.63248 -12.37084 -12.35781 -11.90572 -11.84249 -11.74066 -11.55843 -11.51751 -11.48834 -11.04376 -10.57610 -9.90033 -8.85293 -8.58235 -8.13420 -5.50930 0.25132 0.46495 1.18687 1.30984 1.43899 1.53648 1.79427 2.28452 2.46397 2.56880 2.73043 3.04089 3.38111 3.55182 3.77378 3.89154 3.90866 4.01619 4.08638 4.16231 4.22827 4.30013 4.33902 4.35352 4.39943 4.44438 4.45084 4.50799 4.63148 4.68057 4.72044 4.77291 4.78628 4.82166 4.94245 4.98992 5.04229 5.19329 5.23199 5.30927 5.40976 5.46742 5.55345 5.96669 6.22246 6.33002 6.55150 6.74631 6.99372 7.64964 8.03195 9.06274 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008673 B = 0.004059 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3227.698985 B = 6897.154682 C = 9118.544855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.369 6.369 3 C 0.473 3.527 4 O -0.536 6.536 5 C -0.123 4.123 6 C 0.161 3.839 7 N -0.601 5.601 8 C -0.244 4.244 9 H 0.039 0.961 10 C -0.012 4.012 11 N -0.943 5.943 12 Si 0.928 3.072 13 H -0.274 1.274 14 H -0.312 1.312 15 H -0.251 1.251 16 C 0.127 3.873 17 C 0.062 3.938 18 H 0.094 0.906 19 C -0.101 4.101 20 C -0.146 4.146 21 C -0.107 4.107 22 C 0.086 3.914 23 O -0.330 6.330 24 C 0.018 3.982 25 C -0.166 4.166 26 C -0.121 4.121 27 C 0.048 3.952 28 O -0.299 6.299 29 H 0.059 0.941 30 H 0.131 0.869 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.259 0.741 37 H 0.046 0.954 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.149 0.851 42 H 0.060 0.940 43 H 0.121 0.879 44 H 0.065 0.935 45 H 0.160 0.840 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.879 -12.951 14.820 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.317 3.683 4 O -0.426 6.426 5 C -0.163 4.163 6 C 0.036 3.964 7 N -0.322 5.322 8 C -0.374 4.374 9 H 0.057 0.943 10 C -0.208 4.208 11 N -0.587 5.587 12 Si 0.756 3.244 13 H -0.201 1.201 14 H -0.241 1.241 15 H -0.175 1.175 16 C 0.002 3.998 17 C 0.004 3.996 18 H 0.111 0.889 19 C -0.138 4.138 20 C -0.147 4.147 21 C -0.125 4.125 22 C 0.041 3.959 23 O -0.244 6.244 24 C -0.077 4.077 25 C -0.184 4.184 26 C -0.140 4.140 27 C 0.003 3.997 28 O -0.213 6.213 29 H 0.078 0.922 30 H 0.149 0.851 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.143 0.857 41 H 0.167 0.833 42 H 0.079 0.921 43 H 0.140 0.860 44 H 0.083 0.917 45 H 0.177 0.823 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.981 -12.520 14.686 19.705 hybrid contribution 0.360 0.680 -0.537 0.938 sum -3.621 -11.840 14.149 18.801 Atomic orbital electron populations 1.23542 0.74945 1.05598 1.02539 1.86539 1.25058 1.33105 1.83793 1.24047 0.92279 0.81087 0.70906 1.90624 1.67881 1.37144 1.46927 1.22125 0.85731 1.02731 1.05752 1.20706 0.82458 0.91855 1.01419 1.44047 1.01147 1.85497 1.01527 1.18426 1.07320 1.20772 0.90849 0.94337 1.25914 0.96466 1.00231 0.98202 1.70041 1.09223 1.39626 1.39786 0.86095 0.78626 0.81006 0.78656 1.20124 1.24084 1.17509 1.21689 0.96964 0.92967 0.88197 1.24349 0.94428 0.94317 0.86524 0.88888 1.21912 0.97475 0.94714 0.99690 1.20762 1.02011 0.98062 0.93857 1.19609 0.98651 0.93602 1.00682 1.18760 0.94785 0.93050 0.89270 1.86026 1.62241 1.38526 1.37624 1.23339 0.97681 0.84739 1.01913 1.21112 1.02583 1.02422 0.92322 1.20249 1.00094 0.92606 1.01054 1.20118 0.95771 0.92096 0.91748 1.87206 1.53855 1.47283 1.33006 0.92244 0.85114 0.91638 0.88915 0.87070 0.91192 0.93317 0.93239 0.93611 0.88455 0.89420 0.85681 0.83341 0.92140 0.86040 0.91686 0.82251 0.85513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.37 -9.94 10.57 -51.42 -0.54 -10.48 16 3 C 0.47 14.77 7.96 71.24 0.57 15.33 16 4 O -0.54 -18.97 15.73 21.96 0.35 -18.62 16 5 C -0.12 -4.04 6.02 29.85 0.18 -3.86 16 6 C 0.16 6.10 5.00 86.38 0.43 6.53 16 7 N -0.60 -26.75 2.02 -702.00 -1.42 -28.17 16 8 C -0.24 -13.55 9.66 84.03 0.81 -12.73 16 9 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 10 C -0.01 -0.67 5.23 84.86 0.44 -0.23 16 11 N -0.94 -59.43 13.97 21.65 0.30 -59.13 16 12 Si 0.93 45.22 25.17 68.60 1.73 46.95 16 13 H -0.27 -12.67 6.65 99.48 0.66 -12.01 16 14 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 15 H -0.25 -11.44 7.11 99.48 0.71 -10.74 16 16 C 0.13 4.93 4.09 86.38 0.35 5.28 16 17 C 0.06 2.14 3.68 31.18 0.11 2.25 16 18 H 0.09 2.80 6.15 -2.39 -0.01 2.79 16 19 C -0.10 -2.84 6.65 30.73 0.20 -2.63 16 20 C -0.15 -4.58 6.27 -19.53 -0.12 -4.71 16 21 C -0.11 -2.93 9.98 22.28 0.22 -2.71 16 22 C 0.09 2.28 6.69 22.51 0.15 2.43 16 23 O -0.33 -7.44 10.50 -93.36 -0.98 -8.42 16 24 C 0.02 0.24 9.82 113.37 1.11 1.35 16 25 C -0.17 -4.36 9.02 22.31 0.20 -4.16 16 26 C -0.12 -3.98 10.06 22.44 0.23 -3.76 16 27 C 0.05 1.80 7.03 22.66 0.16 1.96 16 28 O -0.30 -12.98 10.50 -96.36 -1.01 -14.00 16 29 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 30 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.18 8.13 -2.39 -0.02 1.17 16 32 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 33 H 0.11 3.27 6.03 -2.39 -0.01 3.26 16 34 H 0.07 2.34 7.90 -2.39 -0.02 2.32 16 35 H 0.05 2.02 8.00 -2.39 -0.02 2.00 16 36 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 37 H 0.05 2.04 3.58 -2.38 -0.01 2.03 16 38 H 0.10 3.02 7.97 -2.39 -0.02 3.01 16 39 H 0.09 2.53 7.89 -2.39 -0.02 2.51 16 40 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 42 H 0.06 0.77 7.67 -2.39 -0.02 0.75 16 43 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 0.76 7.66 -2.38 -0.02 0.74 16 45 H 0.16 3.09 6.30 -2.91 -0.02 3.07 16 46 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -75.41 377.51 5.63 -69.78 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.95 Total: 20.04 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 6.25 Total: 2.05 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -1.11 Total: -87.30 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -2.19 Total: -51.53 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.73 Total: 46.95 kcal Total: -75.41 5.63 -69.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931537602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.573 kcal (2) G-P(sol) polarization free energy of solvation -75.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds