Wall clock time and date at job start Tue Mar 31 2020 18:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34743 * 117.00362 * 2 1 4 4 O 1.21508 * 119.99539 * 359.97438 * 3 2 1 5 5 C 1.47462 * 120.00531 * 179.97438 * 3 2 1 6 6 C 1.39634 * 119.91613 * 0.02562 * 5 3 2 7 7 C 1.37667 * 119.71819 * 179.97438 * 6 5 3 8 8 C 1.38817 * 119.97052 * 0.07289 * 7 6 5 9 9 O 1.35699 * 119.70951 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99796 * 359.97438 * 9 8 7 11 11 C 1.39499 * 120.58443 * 0.02562 * 8 7 6 12 12 C 1.37317 * 119.77631 * 359.85326 * 11 8 7 13 13 C 1.50704 * 121.74235 * 180.26075 * 12 11 8 14 14 C 1.52888 * 109.90646 * 343.17277 * 13 12 11 15 15 N 1.46935 * 108.60122 * 50.30820 * 14 13 12 16 16 C 1.46903 * 111.01358 * 52.23016 * 15 14 13 17 17 C 1.52996 * 109.47207 * 161.16898 * 16 15 14 18 18 H 1.08996 * 109.47199 * 57.75877 * 17 16 15 19 19 O 1.42904 * 109.47400 * 297.75677 * 17 16 15 20 20 C 1.50702 * 109.47237 * 177.76163 * 17 16 15 21 21 H 1.08002 * 119.99677 * 359.97438 * 20 17 16 22 22 C 1.37876 * 120.00091 * 180.02562 * 20 17 16 23 23 N 1.31511 * 119.99969 * 359.97438 * 22 20 17 24 24 Si 1.86799 * 119.99926 * 179.97438 * 22 20 17 25 25 H 1.48500 * 109.47077 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47303 * 119.99920 * 24 22 20 27 27 H 1.48498 * 109.47293 * 240.00009 * 24 22 20 28 28 C 1.46617 * 110.17910 * 288.85471 * 15 14 13 29 29 H 1.09006 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47516 * 300.00175 * 1 2 3 31 31 H 1.09002 * 109.47160 * 60.00783 * 1 2 3 32 32 H 1.07998 * 120.14336 * 0.02562 * 6 5 3 33 33 H 1.07997 * 120.01082 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.46556 * 60.00587 * 10 9 8 35 35 H 1.09003 * 109.46695 * 180.02562 * 10 9 8 36 36 H 1.08995 * 109.47389 * 299.99627 * 10 9 8 37 37 H 1.08998 * 109.38648 * 103.28032 * 13 12 11 38 38 H 1.08998 * 109.38243 * 223.06767 * 13 12 11 39 39 H 1.09001 * 109.63758 * 169.92480 * 14 13 12 40 40 H 1.09006 * 109.63688 * 290.53201 * 14 13 12 41 41 H 1.08993 * 109.47459 * 281.17344 * 16 15 14 42 42 H 1.09007 * 109.46888 * 41.17108 * 16 15 14 43 43 H 0.96695 * 113.99954 * 300.00714 * 19 17 16 44 44 H 0.96999 * 119.99746 * 180.02562 * 23 22 20 45 45 H 1.09002 * 109.26295 * 292.23892 * 28 15 14 46 46 H 1.08995 * 109.27138 * 172.77553 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5364 1.2777 0.0006 6 6 4.2952 0.1056 0.0006 7 6 5.6697 0.1824 0.0006 8 6 6.2950 1.4218 0.0021 9 8 7.6502 1.4914 0.0026 10 6 8.3633 0.2530 0.0021 11 6 5.5425 2.5964 0.0042 12 6 4.1710 2.5277 0.0017 13 6 3.3151 3.7681 -0.0021 14 6 4.1511 4.9788 0.4136 15 7 5.3780 5.0009 -0.3945 16 6 5.0665 4.9150 -1.8276 17 6 6.2674 5.4023 -2.6407 18 1 7.1431 4.8040 -2.3895 19 8 6.5244 6.7744 -2.3352 20 6 5.9685 5.2626 -4.1111 21 1 5.0172 4.8656 -4.4334 22 6 6.9098 5.6408 -5.0449 23 7 8.0683 6.1238 -4.6524 24 14 6.5395 5.4670 -6.8676 25 1 5.1777 4.9018 -7.0443 26 1 6.6105 6.8008 -7.5165 27 1 7.5362 4.5596 -7.4909 28 6 6.2728 3.9139 0.0147 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 3.8059 -0.8572 -0.0003 33 1 6.2612 -0.7211 0.0002 34 1 8.0997 -0.3176 -0.8884 35 1 9.4352 0.4511 0.0031 36 1 8.0991 -0.3188 0.8916 37 1 2.9171 3.9300 -1.0038 38 1 2.4900 3.6403 0.6987 39 1 3.5837 5.8930 0.2392 40 1 4.4094 4.9004 1.4697 41 1 4.8457 3.8804 -2.0900 42 1 4.2004 5.5388 -2.0491 43 1 5.7861 7.3665 -2.5337 44 1 8.7303 6.3902 -5.3093 45 1 6.6427 4.1121 1.0207 46 1 7.1159 3.8633 -0.6743 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931620942.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:17 Heat of formation + Delta-G solvation = -154.936291 kcal Electronic energy + Delta-G solvation = -30234.478412 eV Core-core repulsion = 26089.013385 eV Total energy + Delta-G solvation = -4145.465027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.27088 -41.08667 -39.93105 -38.18398 -37.43541 -36.90921 -34.21579 -33.19224 -32.65440 -30.83227 -30.10980 -28.70290 -28.02285 -27.18428 -25.36853 -24.48076 -24.06605 -22.72206 -21.84978 -20.26819 -19.06158 -18.74348 -18.64350 -18.09867 -17.47411 -17.30613 -16.87628 -16.75353 -16.63027 -16.28371 -15.84354 -15.62318 -15.34321 -15.05456 -14.75634 -14.64826 -14.43590 -14.35670 -14.05081 -13.88195 -13.41688 -13.27302 -13.13573 -12.99443 -12.91978 -12.86537 -12.79478 -12.47639 -12.32775 -12.14609 -12.03037 -11.98963 -11.83152 -11.69585 -11.23662 -10.99858 -10.69620 -10.10361 -9.82507 -9.33228 -9.10767 -8.12174 -6.38221 -0.35995 0.17576 1.37949 1.39017 1.42865 1.51406 1.68017 2.22757 2.38120 2.57140 3.07565 3.13897 3.53217 3.58567 3.72251 3.93766 4.04480 4.11925 4.16595 4.23693 4.31123 4.33557 4.34239 4.37690 4.40136 4.44755 4.56840 4.57307 4.69780 4.71597 4.73887 4.84733 4.86234 4.92454 5.03198 5.08411 5.09848 5.10542 5.24580 5.45806 5.52710 5.61279 5.76330 6.01372 6.19902 6.24594 6.30574 6.68544 6.74940 7.35682 7.64949 8.92545 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010232 B = 0.003981 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.863566 B = 7032.054698 C = 7797.214165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.512 3.488 4 O -0.528 6.528 5 C -0.193 4.193 6 C -0.010 4.010 7 C -0.223 4.223 8 C 0.169 3.831 9 O -0.327 6.327 10 C 0.013 3.987 11 C -0.174 4.174 12 C 0.016 3.984 13 C -0.112 4.112 14 C 0.050 3.950 15 N -0.526 5.526 16 C 0.054 3.946 17 C 0.243 3.757 18 H 0.017 0.983 19 O -0.569 6.569 20 C -0.588 4.588 21 H 0.053 0.947 22 C 0.029 3.971 23 N -0.897 5.897 24 Si 0.957 3.043 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.277 1.277 28 C 0.111 3.889 29 H 0.136 0.864 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.169 0.831 33 H 0.172 0.828 34 H 0.068 0.932 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.021 0.979 42 H 0.064 0.936 43 H 0.352 0.648 44 H 0.261 0.739 45 H 0.092 0.908 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.208 -17.584 13.108 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.273 6.273 3 C 0.360 3.640 4 O -0.420 6.420 5 C -0.194 4.194 6 C -0.028 4.028 7 C -0.241 4.241 8 C 0.121 3.879 9 O -0.239 6.239 10 C -0.080 4.080 11 C -0.176 4.176 12 C 0.015 3.985 13 C -0.150 4.150 14 C -0.078 4.078 15 N -0.247 5.247 16 C -0.074 4.074 17 C 0.185 3.815 18 H 0.035 0.965 19 O -0.372 6.372 20 C -0.626 4.626 21 H 0.071 0.929 22 C -0.174 4.174 23 N -0.534 5.534 24 Si 0.782 3.218 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.203 1.203 28 C -0.018 4.018 29 H 0.154 0.846 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.186 0.814 33 H 0.189 0.811 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.039 0.961 42 H 0.082 0.918 43 H 0.196 0.804 44 H 0.070 0.930 45 H 0.110 0.890 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.294 -16.852 13.339 23.037 hybrid contribution -1.013 -0.615 -1.518 1.926 sum -9.306 -17.466 11.821 23.052 Atomic orbital electron populations 1.23567 0.74326 1.05847 1.02518 1.86513 1.25158 1.31527 1.84138 1.21122 0.89018 0.81619 0.72234 1.90788 1.67473 1.36224 1.47474 1.18982 0.89445 0.94532 1.16453 1.21437 0.92978 0.98092 0.90296 1.21469 0.95783 0.96866 1.09975 1.19446 0.83246 0.93776 0.91420 1.86098 1.15225 1.35752 1.86875 1.23496 0.97509 0.84038 1.03002 1.19743 0.92767 0.95905 1.09225 1.19486 0.92045 0.94704 0.92255 1.21368 0.98171 0.92136 1.03347 1.22403 0.89798 0.97358 0.98219 1.62547 1.15078 1.43120 1.03918 1.22626 0.99199 0.98288 0.87274 1.19089 0.91389 0.80348 0.90641 0.96549 1.86504 1.43568 1.19387 1.87788 1.22040 1.01884 1.45354 0.93354 0.92897 1.25851 0.94425 0.93588 1.03489 1.70233 1.06739 1.41254 1.35159 0.85551 0.78444 0.78037 0.79789 1.19090 1.20141 1.20268 1.20791 0.94869 0.84569 1.01563 0.84618 0.91713 0.92353 0.81350 0.81051 0.91368 0.86640 0.90000 0.91391 0.87388 0.89388 0.89370 0.96055 0.91760 0.80429 0.92959 0.88952 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.57 113.37 1.20 1.65 16 2 O -0.36 -7.62 9.79 -56.53 -0.55 -8.18 16 3 C 0.51 14.02 7.84 70.25 0.55 14.57 16 4 O -0.53 -16.62 12.91 19.81 0.26 -16.37 16 5 C -0.19 -5.37 5.88 -20.04 -0.12 -5.49 16 6 C -0.01 -0.22 9.60 22.47 0.22 0.00 16 7 C -0.22 -4.78 9.00 22.27 0.20 -4.58 16 8 C 0.17 4.82 6.67 22.71 0.15 4.97 16 9 O -0.33 -9.08 9.58 -90.18 -0.86 -9.94 16 10 C 0.01 0.22 9.80 113.37 1.11 1.33 16 11 C -0.17 -5.78 5.09 -19.80 -0.10 -5.88 16 12 C 0.02 0.51 5.14 -19.61 -0.10 0.41 16 13 C -0.11 -3.59 3.72 29.81 0.11 -3.48 16 14 C 0.05 1.58 5.93 86.26 0.51 2.09 16 15 N -0.53 -20.48 4.86 -901.81 -4.38 -24.86 16 16 C 0.05 2.42 3.28 86.30 0.28 2.70 16 17 C 0.24 13.22 2.90 29.85 0.09 13.30 16 18 H 0.02 1.02 6.72 -2.39 -0.02 1.00 16 19 O -0.57 -31.50 12.64 -148.98 -1.88 -33.38 16 20 C -0.59 -33.87 8.76 25.60 0.22 -33.64 16 21 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 22 C 0.03 1.67 5.40 84.65 0.46 2.13 16 23 N -0.90 -55.10 12.84 21.45 0.28 -54.83 16 24 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 28 C 0.11 4.12 5.06 85.59 0.43 4.55 16 29 H 0.14 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.17 2.57 7.59 -2.91 -0.02 2.55 16 33 H 0.17 2.35 6.25 -2.91 -0.02 2.33 16 34 H 0.07 0.98 7.64 -2.39 -0.02 0.96 16 35 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 0.91 7.64 -2.39 -0.02 0.89 16 37 H 0.07 2.44 7.13 -2.39 -0.02 2.42 16 38 H 0.11 3.32 5.99 -2.39 -0.01 3.31 16 39 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.09 2.47 8.05 -2.38 -0.02 2.45 16 41 H 0.02 0.99 6.29 -2.39 -0.02 0.97 16 42 H 0.06 2.78 7.89 -2.38 -0.02 2.76 16 43 H 0.35 17.36 9.04 -74.06 -0.67 16.69 16 44 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 45 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 46 H 0.06 2.77 6.24 -2.39 -0.01 2.75 16 Total: -1.00 -75.25 369.45 0.44 -74.81 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.35 Total: 31.49 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 5.21 Total: -5.37 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -4.10 Total: -79.68 kcal Atomic # 8 Polarization: -64.82 SS G_CDS: -3.04 Total: -67.87 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -75.25 0.44 -74.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931620942.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.130 kcal (2) G-P(sol) polarization free energy of solvation -75.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds