Wall clock time and date at job start Tue Mar 31 2020 19:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00223 * 2 1 4 4 O 1.20832 * 119.99579 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00718 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.16189 * 56.64095 * 5 3 2 7 7 C 1.50748 * 109.16470 * 297.43423 * 5 3 2 8 8 C 1.38724 * 118.21305 * 30.55129 * 7 5 3 9 9 C 1.38033 * 120.41373 * 180.18655 * 8 7 5 10 10 C 1.38285 * 120.05786 * 359.50902 * 9 8 7 11 11 C 1.37987 * 119.84423 * 0.26878 * 10 9 8 12 12 C 1.38222 * 122.25854 * 210.26802 * 7 5 3 13 13 O 1.35717 * 121.35522 * 0.09607 * 12 7 5 14 14 C 1.43016 * 117.56998 * 310.61249 * 13 12 7 15 15 C 1.52935 * 108.05412 * 93.69302 * 14 13 12 16 16 N 1.46701 * 109.17358 * 175.91078 * 5 3 2 17 17 C 1.46906 * 110.99934 * 87.68263 * 16 5 3 18 18 C 1.53001 * 109.46792 * 287.52404 * 17 16 5 19 19 O 1.42903 * 109.47178 * 65.00340 * 18 17 16 20 20 C 1.42902 * 113.99915 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.47270 * 179.97438 * 20 19 18 22 22 H 1.08004 * 119.99778 * 0.02562 * 21 20 19 23 23 C 1.37874 * 120.00108 * 179.97438 * 21 20 19 24 24 N 1.31518 * 119.99722 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99881 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.46725 * 90.00254 * 25 23 21 27 27 H 1.48500 * 109.47073 * 209.99556 * 25 23 21 28 28 H 1.48489 * 109.47323 * 330.00044 * 25 23 21 29 29 H 1.08998 * 109.46799 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47222 * 300.00075 * 1 2 3 31 31 H 1.09004 * 109.47004 * 60.00503 * 1 2 3 32 32 H 1.07996 * 119.79199 * 359.93818 * 8 7 5 33 33 H 1.07996 * 119.96730 * 179.77942 * 9 8 7 34 34 H 1.08001 * 120.07983 * 180.24492 * 10 9 8 35 35 H 1.08003 * 119.91125 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.74844 * 213.33329 * 14 13 12 37 37 H 1.09005 * 109.74699 * 334.00992 * 14 13 12 38 38 H 1.08999 * 109.60410 * 87.30495 * 15 14 13 39 39 H 1.09003 * 109.60830 * 207.80264 * 15 14 13 40 40 H 1.08997 * 109.47208 * 47.52383 * 17 16 5 41 41 H 1.09000 * 109.46953 * 167.52582 * 17 16 5 42 42 H 1.09008 * 109.46835 * 184.99935 * 18 17 16 43 43 H 1.08997 * 109.47162 * 305.00027 * 18 17 16 44 44 H 1.08998 * 109.47308 * 300.00117 * 20 19 18 45 45 H 1.09008 * 109.47046 * 59.99823 * 20 19 18 46 46 H 0.96998 * 119.99531 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9529 0.7285 -0.8608 7 6 4.0954 0.6455 1.2629 8 6 3.3698 -0.3902 1.8332 9 6 3.8105 -0.9966 2.9922 10 6 4.9871 -0.5802 3.5876 11 6 5.7163 0.4464 3.0234 12 6 5.2712 1.0621 1.8583 13 8 6.0121 2.0690 1.3300 14 6 6.3184 2.0037 -0.0655 15 6 5.2530 2.7982 -0.8222 16 7 3.9750 2.6804 -0.0993 17 6 4.0638 3.2975 1.2309 18 6 2.6552 3.5136 1.7879 19 8 2.0273 2.2476 1.9996 20 6 0.7001 2.3372 2.5219 21 6 0.1374 0.9511 2.7043 22 1 0.7337 0.0881 2.4474 23 6 -1.1384 0.7847 3.2000 24 7 -1.6292 -0.4250 3.3595 25 14 -2.1695 2.2774 3.6449 26 1 -2.9537 2.7083 2.4597 27 1 -3.0964 1.9269 4.7509 28 1 -1.2784 3.3835 4.0777 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 2.4524 -0.7215 1.3697 33 1 3.2381 -1.7999 3.4320 34 1 5.3343 -1.0571 4.4923 35 1 6.6352 0.7727 3.4878 36 1 7.3010 2.4389 -0.2476 37 1 6.3086 0.9651 -0.3964 38 1 5.5477 3.8462 -0.8757 39 1 5.1423 2.3950 -1.8289 40 1 4.6220 2.6418 1.8991 41 1 4.5748 4.2571 1.1529 42 1 2.7172 4.0513 2.7341 43 1 2.0688 4.0957 1.0770 44 1 0.7219 2.8502 3.4834 45 1 0.0729 2.8950 1.8266 46 1 -2.5269 -0.5420 3.7079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932750992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:33 Heat of formation + Delta-G solvation = -63.524344 kcal Electronic energy + Delta-G solvation = -33166.353503 eV Core-core repulsion = 29024.852395 eV Total energy + Delta-G solvation = -4141.501107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.87379 -40.75131 -38.84364 -38.30263 -37.21095 -36.55366 -34.82953 -33.02657 -32.41972 -30.89737 -29.90981 -29.06060 -27.91262 -26.92049 -24.07836 -23.69452 -23.59952 -22.88089 -22.33831 -20.81182 -19.14310 -18.68137 -18.52044 -18.03814 -17.67571 -17.23600 -16.96001 -16.84397 -16.61477 -16.22265 -15.98335 -15.53053 -15.26103 -15.05541 -14.59377 -14.53386 -14.25860 -13.99962 -13.89676 -13.72097 -13.51905 -13.16757 -13.05531 -12.81287 -12.68793 -12.66853 -12.45972 -12.39959 -12.13562 -11.96873 -11.82839 -11.63042 -11.41772 -11.15930 -10.97116 -10.75755 -10.61692 -10.03642 -9.59752 -9.30508 -9.02823 -8.27584 -6.21888 0.33239 0.51884 1.28575 1.31981 1.40162 1.79141 2.04181 2.31166 2.41346 2.90647 3.02058 3.03499 3.30932 3.66279 3.89523 3.92043 4.09871 4.13191 4.20973 4.29806 4.35068 4.50389 4.54191 4.54649 4.59354 4.64834 4.70390 4.72731 4.77369 4.80063 4.83979 4.91421 4.98041 5.11196 5.19154 5.26175 5.43715 5.46460 5.55848 5.61890 5.75979 5.84501 5.93243 6.03968 6.07359 6.16251 6.52611 6.73284 6.90761 7.32726 7.39976 8.84858 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014939 B = 0.005730 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.874584 B = 4885.489631 C = 5317.333068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.365 6.365 3 C 0.487 3.513 4 O -0.503 6.503 5 C 0.152 3.848 6 H 0.123 0.877 7 C -0.144 4.144 8 C -0.085 4.085 9 C -0.147 4.147 10 C -0.092 4.092 11 C -0.149 4.149 12 C 0.114 3.886 13 O -0.332 6.332 14 C 0.021 3.979 15 C 0.024 3.976 16 N -0.518 5.518 17 C 0.032 3.968 18 C 0.060 3.940 19 O -0.370 6.370 20 C 0.184 3.816 21 C -0.495 4.495 22 H 0.073 0.927 23 C 0.033 3.967 24 N -0.921 5.921 25 Si 0.917 3.083 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.268 1.268 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.040 0.960 32 H 0.130 0.870 33 H 0.120 0.880 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.132 0.868 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.031 0.969 43 H 0.034 0.966 44 H -0.019 1.019 45 H -0.011 1.011 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.093 2.591 -6.779 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.282 6.282 3 C 0.330 3.670 4 O -0.389 6.389 5 C 0.042 3.958 6 H 0.140 0.860 7 C -0.146 4.146 8 C -0.103 4.103 9 C -0.165 4.165 10 C -0.110 4.110 11 C -0.167 4.167 12 C 0.071 3.929 13 O -0.249 6.249 14 C -0.054 4.054 15 C -0.103 4.103 16 N -0.242 5.242 17 C -0.094 4.094 18 C -0.018 4.018 19 O -0.289 6.289 20 C 0.108 3.892 21 C -0.533 4.533 22 H 0.091 0.909 23 C -0.167 4.167 24 N -0.561 5.561 25 Si 0.742 3.258 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.193 1.193 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.059 0.941 32 H 0.148 0.852 33 H 0.138 0.862 34 H 0.169 0.831 35 H 0.168 0.832 36 H 0.149 0.851 37 H 0.086 0.914 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.049 0.951 43 H 0.052 0.948 44 H -0.001 1.001 45 H 0.007 0.993 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.486 3.061 -6.965 19.069 hybrid contribution -1.320 0.329 0.733 1.545 sum 16.167 3.390 -6.231 17.654 Atomic orbital electron populations 1.23890 0.76457 1.03508 1.04304 1.86283 1.23724 1.33865 1.84351 1.22933 0.91264 0.81161 0.71646 1.90491 1.67043 1.37100 1.44278 1.19964 0.88312 0.90585 0.96974 0.85968 1.20041 0.95642 0.99152 0.99802 1.21714 0.98758 0.94228 0.95644 1.21243 0.97544 1.01625 0.96067 1.21254 0.93887 0.96121 0.99758 1.21133 1.01927 0.96757 0.96897 1.18043 0.89968 0.89443 0.95448 1.86236 1.70095 1.41664 1.26875 1.24040 1.01196 1.01854 0.78303 1.23205 0.85753 1.03362 0.97976 1.62012 1.31156 1.11611 1.19391 1.23323 0.94125 1.01460 0.90469 1.22536 0.95067 0.87098 0.97064 1.87767 1.28967 1.27872 1.84321 1.20133 0.81878 0.96774 0.90368 1.20927 0.99244 0.92018 1.41134 0.90949 1.25267 0.98356 0.97608 0.95431 1.69951 1.17442 1.21966 1.46693 0.86179 0.79527 0.81401 0.78668 1.19741 1.20189 1.19286 0.89256 0.87853 0.94102 0.85222 0.86218 0.83067 0.83163 0.85070 0.91392 0.87551 0.87508 0.87501 0.88381 0.95111 0.94768 1.00109 0.99333 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.50 9.75 113.37 1.10 1.60 16 2 O -0.37 -15.50 7.11 -51.39 -0.37 -15.86 16 3 C 0.49 20.11 4.41 71.24 0.31 20.42 16 4 O -0.50 -23.53 10.56 29.95 0.32 -23.22 16 5 C 0.15 4.93 2.23 43.48 0.10 5.03 16 6 H 0.12 3.30 7.66 -2.39 -0.02 3.28 16 7 C -0.14 -4.77 3.57 -19.74 -0.07 -4.84 16 8 C -0.09 -3.20 7.99 22.34 0.18 -3.02 16 9 C -0.15 -4.96 10.04 22.23 0.22 -4.74 16 10 C -0.09 -2.53 10.05 22.22 0.22 -2.31 16 11 C -0.15 -3.91 9.94 22.42 0.22 -3.68 16 12 C 0.11 3.26 4.07 22.47 0.09 3.35 16 13 O -0.33 -7.89 7.40 -90.39 -0.67 -8.55 16 14 C 0.02 0.35 6.50 71.96 0.47 0.82 16 15 C 0.02 0.43 5.94 86.20 0.51 0.95 16 16 N -0.52 -15.09 4.27 -879.24 -3.76 -18.85 16 17 C 0.03 1.01 4.23 86.30 0.37 1.38 16 18 C 0.06 2.38 5.35 71.98 0.38 2.77 16 19 O -0.37 -17.10 3.84 -124.79 -0.48 -17.57 16 20 C 0.18 9.60 3.73 71.24 0.27 9.86 16 21 C -0.50 -27.47 6.21 25.60 0.16 -27.31 16 22 H 0.07 4.28 5.79 -2.91 -0.02 4.26 16 23 C 0.03 1.83 5.10 84.65 0.43 2.26 16 24 N -0.92 -53.37 13.96 21.45 0.30 -53.07 16 25 Si 0.92 44.48 27.47 68.60 1.88 46.36 16 26 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 28 H -0.27 -12.92 6.54 99.48 0.65 -12.27 16 29 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 30 H 0.10 5.39 3.66 -2.39 -0.01 5.38 16 31 H 0.04 1.67 8.13 -2.38 -0.02 1.65 16 32 H 0.13 5.57 4.08 -2.91 -0.01 5.56 16 33 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.08 7.79 -2.38 -0.02 1.06 16 38 H 0.11 1.58 8.00 -2.39 -0.02 1.56 16 39 H 0.11 1.54 8.04 -2.39 -0.02 1.52 16 40 H 0.11 3.48 2.65 -91.27 -0.24 3.24 16 41 H 0.10 2.59 7.90 -2.39 -0.02 2.58 16 42 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.03 1.47 7.33 -2.39 -0.02 1.45 16 44 H -0.02 -1.00 7.20 -2.39 -0.02 -1.01 16 45 H -0.01 -0.60 6.94 -2.38 -0.02 -0.62 16 46 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -67.86 336.56 2.92 -64.94 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.72 Total: 23.31 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 4.97 Total: 2.53 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: -3.46 Total: -71.93 kcal Atomic # 8 Polarization: -64.01 SS G_CDS: -1.20 Total: -65.21 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Total: -67.86 2.92 -64.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932750992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.417 kcal (2) G-P(sol) polarization free energy of solvation -67.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds