Wall clock time and date at job start Tue Mar 31 2020 19:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00471 * 2 1 4 4 O 1.20824 * 119.99649 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00098 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.12364 * 327.14478 * 5 3 2 7 7 C 1.50746 * 109.15857 * 86.40442 * 5 3 2 8 8 C 1.38725 * 118.20826 * 329.69653 * 7 5 3 9 9 C 1.38034 * 120.41093 * 180.08468 * 8 7 5 10 10 C 1.38292 * 120.06029 * 359.76992 * 9 8 7 11 11 C 1.37987 * 119.84304 * 0.45487 * 10 9 8 12 12 C 1.38220 * 122.26129 * 149.76563 * 7 5 3 13 13 O 1.35713 * 121.35163 * 359.84885 * 12 7 5 14 14 C 1.43013 * 117.56947 * 49.41787 * 13 12 7 15 15 C 1.52939 * 108.05109 * 266.29973 * 14 13 12 16 16 N 1.46695 * 109.16846 * 207.90747 * 5 3 2 17 17 C 1.46905 * 110.99980 * 272.31269 * 16 5 3 18 18 C 1.53000 * 109.46907 * 120.84911 * 17 16 5 19 19 O 1.42900 * 109.47135 * 63.81870 * 18 17 16 20 20 C 1.42897 * 114.00136 * 179.97438 * 19 18 17 21 21 C 1.50695 * 109.47283 * 179.97438 * 20 19 18 22 22 H 1.08007 * 120.00279 * 0.02562 * 21 20 19 23 23 C 1.37873 * 120.00435 * 180.02562 * 21 20 19 24 24 N 1.31521 * 119.99873 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00523 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47237 * 89.99990 * 25 23 21 27 27 H 1.48505 * 109.47214 * 209.99850 * 25 23 21 28 28 H 1.48494 * 109.47075 * 329.99547 * 25 23 21 29 29 H 1.09000 * 109.47303 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46701 * 300.00328 * 1 2 3 31 31 H 1.09007 * 109.46864 * 59.99779 * 1 2 3 32 32 H 1.07990 * 119.79287 * 0.06764 * 8 7 5 33 33 H 1.07999 * 119.97047 * 179.97438 * 9 8 7 34 34 H 1.08007 * 120.07909 * 180.24453 * 10 9 8 35 35 H 1.07994 * 119.91695 * 179.80323 * 11 10 9 36 36 H 1.09000 * 109.75113 * 25.94168 * 14 13 12 37 37 H 1.09006 * 109.74657 * 146.61763 * 14 13 12 38 38 H 1.09002 * 109.60615 * 152.20252 * 15 14 13 39 39 H 1.09006 * 109.60801 * 272.69235 * 15 14 13 40 40 H 1.09005 * 109.47172 * 240.85090 * 17 16 5 41 41 H 1.08997 * 109.47178 * 0.84959 * 17 16 5 42 42 H 1.09008 * 109.47093 * 183.81412 * 18 17 16 43 43 H 1.08991 * 109.47140 * 303.81736 * 18 17 16 44 44 H 1.08994 * 109.47671 * 300.00112 * 20 19 18 45 45 H 1.09003 * 109.46680 * 60.00092 * 20 19 18 46 46 H 0.97000 * 120.00611 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2092 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9684 0.4293 0.5578 7 6 4.0645 1.2117 -1.4220 8 6 3.3188 0.4957 -2.3470 9 6 3.7337 0.4067 -3.6605 10 6 4.8967 1.0370 -4.0638 11 6 5.6460 1.7469 -3.1480 12 6 5.2292 1.8379 -1.8240 13 8 5.9862 2.5492 -0.9506 14 6 6.3226 1.9275 0.2927 15 6 5.2777 2.3442 1.3289 16 7 3.9836 2.5225 0.6480 17 6 4.0463 3.6244 -0.3215 18 6 3.0967 4.7420 0.1145 19 8 3.5360 5.2802 1.3633 20 6 2.7137 6.3371 1.8622 21 6 3.2664 6.8261 3.1761 22 1 4.1569 6.3752 3.5887 23 6 2.6354 7.8491 3.8515 24 7 1.5513 8.3985 3.3489 25 14 3.3209 8.4558 5.4798 26 1 4.2910 9.5522 5.2308 27 1 2.2106 8.9602 6.3272 28 1 4.0060 7.3372 6.1760 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.4081 0.0047 -2.0375 33 1 3.1478 -0.1529 -4.3746 34 1 5.2196 0.9708 -5.0923 35 1 6.5561 2.2369 -3.4610 36 1 6.3143 0.8437 0.1767 37 1 7.3113 2.2559 0.6131 38 1 5.1871 1.5686 2.0893 39 1 5.5785 3.2828 1.7945 40 1 5.0647 4.0103 -0.3676 41 1 3.7510 3.2599 -1.3054 42 1 3.0921 5.5296 -0.6391 43 1 2.0897 4.3401 0.2262 44 1 2.7015 7.1576 1.1448 45 1 1.6986 5.9686 2.0100 46 1 1.1071 9.1180 3.8242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932751012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:39 Heat of formation + Delta-G solvation = -93.631682 kcal Electronic energy + Delta-G solvation = -30597.397338 eV Core-core repulsion = 26454.590679 eV Total energy + Delta-G solvation = -4142.806660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.88275 -40.09660 -38.12575 -36.96902 -36.26025 -35.66288 -32.64618 -32.31303 -31.21813 -29.90708 -28.60473 -27.70359 -26.76966 -25.82087 -23.33729 -22.71069 -22.09969 -21.73834 -21.62352 -20.01179 -18.15576 -17.75753 -16.95871 -16.76201 -16.36492 -16.14504 -16.02848 -15.75676 -15.28259 -14.97434 -14.73138 -14.42359 -14.15790 -13.95264 -13.76289 -13.64019 -13.35178 -12.90059 -12.83645 -12.73432 -12.43252 -12.14721 -12.00849 -11.74297 -11.60479 -11.55920 -10.99083 -10.95388 -10.83521 -10.72222 -10.68262 -10.55679 -10.41164 -10.11416 -9.87420 -9.13400 -8.92711 -8.66091 -8.60385 -8.05264 -7.90478 -5.97750 -3.98403 0.88871 1.03303 2.23862 2.53127 3.08967 3.37064 3.41412 3.47025 3.50372 3.92025 4.25795 4.46063 4.56181 4.65354 4.76565 4.78169 4.84680 4.90111 5.02582 5.09886 5.11386 5.15077 5.20837 5.21970 5.34423 5.38127 5.43692 5.44487 5.65524 5.84563 5.94569 6.00247 6.07242 6.13043 6.19835 6.29211 6.34021 6.42626 6.47940 6.77040 7.00009 7.18906 7.24943 7.35966 7.66315 7.85089 7.93042 8.33901 8.83251 9.18124 9.65879 11.14051 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.003438 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.374257 B = 8142.810612 C = 9098.216815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.468 3.532 4 O -0.466 6.466 5 C 0.135 3.865 6 H 0.115 0.885 7 C -0.159 4.159 8 C -0.092 4.092 9 C -0.137 4.137 10 C -0.091 4.091 11 C -0.139 4.139 12 C 0.132 3.868 13 O -0.318 6.318 14 C 0.026 3.974 15 C 0.029 3.971 16 N -0.497 5.497 17 C 0.057 3.943 18 C 0.065 3.935 19 O -0.389 6.389 20 C 0.197 3.803 21 C -0.507 4.507 22 H 0.064 0.936 23 C 0.054 3.946 24 N -0.900 5.900 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.272 1.272 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.028 0.972 43 H 0.054 0.946 44 H -0.001 1.001 45 H 0.002 0.998 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.180 -22.486 -13.892 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.307 3.693 4 O -0.349 6.349 5 C 0.024 3.976 6 H 0.132 0.868 7 C -0.161 4.161 8 C -0.110 4.110 9 C -0.155 4.155 10 C -0.109 4.109 11 C -0.157 4.157 12 C 0.088 3.912 13 O -0.233 6.233 14 C -0.050 4.050 15 C -0.099 4.099 16 N -0.219 5.219 17 C -0.069 4.069 18 C -0.013 4.013 19 O -0.309 6.309 20 C 0.122 3.878 21 C -0.546 4.546 22 H 0.083 0.917 23 C -0.147 4.147 24 N -0.540 5.540 25 Si 0.733 3.267 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.197 1.197 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.017 0.983 45 H 0.020 0.980 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.667 -21.760 -13.381 26.166 hybrid contribution 0.124 0.204 0.229 0.331 sum 5.792 -21.556 -13.152 25.907 Atomic orbital electron populations 1.23252 0.76329 1.03394 1.02900 1.86485 1.23430 1.33723 1.84782 1.23286 0.91176 0.81575 0.73219 1.90705 1.66243 1.35866 1.42046 1.20136 0.89033 0.96718 0.91719 0.86784 1.20327 0.96431 1.03035 0.96341 1.21212 0.99437 0.97300 0.93089 1.21060 0.97426 1.01215 0.95775 1.21061 0.94466 0.96091 0.99307 1.21027 1.01344 1.01485 0.91884 1.18420 0.89665 0.92712 0.90413 1.86221 1.68785 1.39971 1.28369 1.23878 1.00782 0.97598 0.82728 1.23092 0.86270 1.04805 0.95691 1.61914 1.28891 1.01591 1.29501 1.22798 1.01266 0.90291 0.92521 1.22419 0.97995 0.93354 0.87540 1.87790 1.54043 1.53877 1.35200 1.20093 0.90092 0.83905 0.93672 1.21073 1.11723 1.17292 1.04475 0.91737 1.24952 0.95014 0.96345 0.98364 1.69982 1.18997 1.25717 1.39267 0.86373 0.78402 0.78943 0.82946 1.20591 1.21205 1.19710 0.88251 0.91579 0.91985 0.85179 0.85548 0.85198 0.84812 0.91953 0.87627 0.89340 0.87344 0.89117 0.91389 0.95396 0.92780 0.98298 0.97973 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.37 -4.39 9.33 -39.25 -0.37 -4.76 16 3 C 0.47 6.94 5.90 36.00 0.21 7.15 16 4 O -0.47 -8.71 14.00 -18.75 -0.26 -8.97 16 5 C 0.13 1.79 2.28 -70.11 -0.16 1.63 16 6 H 0.11 1.24 7.67 -51.93 -0.40 0.84 16 7 C -0.16 -1.93 4.01 -104.43 -0.42 -2.35 16 8 C -0.09 -0.98 9.06 -39.48 -0.36 -1.34 16 9 C -0.14 -1.22 10.04 -39.64 -0.40 -1.62 16 10 C -0.09 -0.78 10.05 -39.65 -0.40 -1.18 16 11 C -0.14 -1.41 9.94 -39.35 -0.39 -1.80 16 12 C 0.13 1.59 4.36 -39.27 -0.17 1.42 16 13 O -0.32 -4.02 6.78 -18.84 -0.13 -4.15 16 14 C 0.03 0.27 6.47 37.13 0.24 0.51 16 15 C 0.03 0.38 5.78 -3.63 -0.02 0.36 16 16 N -0.50 -7.96 4.14 -229.26 -0.95 -8.91 16 17 C 0.06 1.02 3.40 -3.82 -0.01 1.00 16 18 C 0.07 1.45 6.22 37.16 0.23 1.68 16 19 O -0.39 -10.26 10.26 -35.23 -0.36 -10.62 16 20 C 0.20 5.87 5.69 36.00 0.20 6.08 16 21 C -0.51 -15.71 9.43 -34.44 -0.32 -16.03 16 22 H 0.06 1.96 7.81 -52.48 -0.41 1.55 16 23 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 24 N -0.90 -28.29 13.29 55.43 0.74 -27.55 16 25 Si 0.91 22.65 29.54 -169.99 -5.02 17.63 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 31 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.13 1.32 5.93 -52.49 -0.31 1.01 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 35 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.06 0.53 7.79 -51.93 -0.40 0.12 16 37 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 0.94 8.04 -51.93 -0.42 0.52 16 39 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.09 1.61 5.57 -51.93 -0.29 1.32 16 41 H 0.07 1.16 4.95 -51.93 -0.26 0.91 16 42 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 43 H 0.05 1.29 6.21 -51.93 -0.32 0.97 16 44 H 0.00 -0.02 8.14 -51.93 -0.42 -0.45 16 45 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 46 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 368.86 15.07 5.56 5.56 Total: -1.00 -36.68 368.86 -8.18 -44.87 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -6.59 Total: -1.54 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -0.80 Total: -1.56 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: -0.21 Total: -36.46 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -1.12 Total: -28.49 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.68 -8.18 -44.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932751012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.764 kcal (2) G-P(sol) polarization free energy of solvation -36.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds