Wall clock time and date at job start Tue Mar 31 2020 19:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00471 * 2 1 4 4 O 1.20824 * 119.99649 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00098 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.12364 * 327.14478 * 5 3 2 7 7 C 1.50746 * 109.15857 * 86.40442 * 5 3 2 8 8 C 1.38725 * 118.20826 * 329.69653 * 7 5 3 9 9 C 1.38034 * 120.41093 * 180.08468 * 8 7 5 10 10 C 1.38292 * 120.06029 * 359.76992 * 9 8 7 11 11 C 1.37987 * 119.84304 * 0.45487 * 10 9 8 12 12 C 1.38220 * 122.26129 * 149.76563 * 7 5 3 13 13 O 1.35713 * 121.35163 * 359.84885 * 12 7 5 14 14 C 1.43013 * 117.56947 * 49.41787 * 13 12 7 15 15 C 1.52939 * 108.05109 * 266.29973 * 14 13 12 16 16 N 1.46695 * 109.16846 * 207.90747 * 5 3 2 17 17 C 1.46905 * 110.99980 * 272.31269 * 16 5 3 18 18 C 1.53000 * 109.46907 * 120.84911 * 17 16 5 19 19 O 1.42900 * 109.47135 * 63.81870 * 18 17 16 20 20 C 1.42897 * 114.00136 * 179.97438 * 19 18 17 21 21 C 1.50695 * 109.47283 * 179.97438 * 20 19 18 22 22 H 1.08007 * 120.00279 * 0.02562 * 21 20 19 23 23 C 1.37873 * 120.00435 * 180.02562 * 21 20 19 24 24 N 1.31521 * 119.99873 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00523 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47237 * 89.99990 * 25 23 21 27 27 H 1.48505 * 109.47214 * 209.99850 * 25 23 21 28 28 H 1.48494 * 109.47075 * 329.99547 * 25 23 21 29 29 H 1.09000 * 109.47303 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46701 * 300.00328 * 1 2 3 31 31 H 1.09007 * 109.46864 * 59.99779 * 1 2 3 32 32 H 1.07990 * 119.79287 * 0.06764 * 8 7 5 33 33 H 1.07999 * 119.97047 * 179.97438 * 9 8 7 34 34 H 1.08007 * 120.07909 * 180.24453 * 10 9 8 35 35 H 1.07994 * 119.91695 * 179.80323 * 11 10 9 36 36 H 1.09000 * 109.75113 * 25.94168 * 14 13 12 37 37 H 1.09006 * 109.74657 * 146.61763 * 14 13 12 38 38 H 1.09002 * 109.60615 * 152.20252 * 15 14 13 39 39 H 1.09006 * 109.60801 * 272.69235 * 15 14 13 40 40 H 1.09005 * 109.47172 * 240.85090 * 17 16 5 41 41 H 1.08997 * 109.47178 * 0.84959 * 17 16 5 42 42 H 1.09008 * 109.47093 * 183.81412 * 18 17 16 43 43 H 1.08991 * 109.47140 * 303.81736 * 18 17 16 44 44 H 1.08994 * 109.47671 * 300.00112 * 20 19 18 45 45 H 1.09003 * 109.46680 * 60.00092 * 20 19 18 46 46 H 0.97000 * 120.00611 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2092 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9684 0.4293 0.5578 7 6 4.0645 1.2117 -1.4220 8 6 3.3188 0.4957 -2.3470 9 6 3.7337 0.4067 -3.6605 10 6 4.8967 1.0370 -4.0638 11 6 5.6460 1.7469 -3.1480 12 6 5.2292 1.8379 -1.8240 13 8 5.9862 2.5492 -0.9506 14 6 6.3226 1.9275 0.2927 15 6 5.2777 2.3442 1.3289 16 7 3.9836 2.5225 0.6480 17 6 4.0463 3.6244 -0.3215 18 6 3.0967 4.7420 0.1145 19 8 3.5360 5.2802 1.3633 20 6 2.7137 6.3371 1.8622 21 6 3.2664 6.8261 3.1761 22 1 4.1569 6.3752 3.5887 23 6 2.6354 7.8491 3.8515 24 7 1.5513 8.3985 3.3489 25 14 3.3209 8.4558 5.4798 26 1 4.2910 9.5522 5.2308 27 1 2.2106 8.9602 6.3272 28 1 4.0060 7.3372 6.1760 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.4081 0.0047 -2.0375 33 1 3.1478 -0.1529 -4.3746 34 1 5.2196 0.9708 -5.0923 35 1 6.5561 2.2369 -3.4610 36 1 6.3143 0.8437 0.1767 37 1 7.3113 2.2559 0.6131 38 1 5.1871 1.5686 2.0893 39 1 5.5785 3.2828 1.7945 40 1 5.0647 4.0103 -0.3676 41 1 3.7510 3.2599 -1.3054 42 1 3.0921 5.5296 -0.6391 43 1 2.0897 4.3401 0.2262 44 1 2.7015 7.1576 1.1448 45 1 1.6986 5.9686 2.0100 46 1 1.1071 9.1180 3.8242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932751012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:38 Heat of formation + Delta-G solvation = -119.077407 kcal Electronic energy + Delta-G solvation = -30598.500748 eV Core-core repulsion = 26454.590679 eV Total energy + Delta-G solvation = -4143.910069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.85619 -41.15437 -39.05419 -38.41245 -37.71993 -36.93236 -34.93278 -33.23247 -32.31874 -31.13361 -29.48715 -29.32851 -28.31718 -26.96730 -24.62112 -24.19330 -23.69628 -22.93099 -22.56585 -21.12924 -19.05813 -18.80695 -18.64830 -18.02489 -17.70701 -17.44319 -17.07079 -16.89547 -16.83857 -16.50022 -16.24627 -15.66397 -15.48105 -15.19043 -14.80559 -14.76798 -14.56667 -14.33853 -13.94166 -13.80228 -13.59913 -13.51404 -13.20473 -13.00594 -12.91623 -12.84141 -12.69435 -12.47295 -12.40150 -12.15484 -12.01692 -11.82075 -11.69672 -11.64523 -11.32353 -11.22374 -10.83555 -10.16967 -9.92000 -9.61013 -9.11501 -8.31403 -6.44883 0.11233 0.27416 1.10222 1.38221 1.42996 1.54920 1.55770 2.30636 2.34993 2.68522 2.84335 3.01498 3.24939 3.38784 3.63915 3.77910 3.93328 3.93718 4.01085 4.14807 4.23968 4.28671 4.31011 4.39161 4.40060 4.46792 4.49322 4.50439 4.60502 4.67895 4.69254 4.74215 4.84179 4.93156 5.01202 5.03873 5.16697 5.27083 5.29565 5.35547 5.48316 5.54719 5.72733 5.86435 5.94767 5.96979 6.41464 6.55996 6.73651 6.84475 7.27294 8.81794 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.003438 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.374257 B = 8142.810612 C = 9098.216815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.470 3.530 4 O -0.516 6.516 5 C 0.138 3.862 6 H 0.139 0.861 7 C -0.174 4.174 8 C -0.102 4.102 9 C -0.134 4.134 10 C -0.084 4.084 11 C -0.146 4.146 12 C 0.115 3.885 13 O -0.336 6.336 14 C 0.032 3.968 15 C 0.027 3.973 16 N -0.527 5.527 17 C 0.081 3.919 18 C 0.059 3.941 19 O -0.392 6.392 20 C 0.212 3.788 21 C -0.543 4.543 22 H 0.065 0.935 23 C 0.001 3.999 24 N -0.935 5.935 25 Si 0.990 3.010 26 H -0.265 1.265 27 H -0.275 1.275 28 H -0.261 1.261 29 H 0.140 0.860 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.131 0.869 33 H 0.154 0.846 34 H 0.162 0.838 35 H 0.146 0.854 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.026 0.974 43 H 0.034 0.966 44 H -0.023 1.023 45 H -0.030 1.030 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.771 -24.307 -14.192 29.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.402 6.402 5 C 0.027 3.973 6 H 0.157 0.843 7 C -0.177 4.177 8 C -0.121 4.121 9 C -0.152 4.152 10 C -0.101 4.101 11 C -0.164 4.164 12 C 0.070 3.930 13 O -0.252 6.252 14 C -0.043 4.043 15 C -0.100 4.100 16 N -0.250 5.250 17 C -0.046 4.046 18 C -0.019 4.019 19 O -0.311 6.311 20 C 0.137 3.863 21 C -0.580 4.580 22 H 0.083 0.917 23 C -0.197 4.197 24 N -0.575 5.575 25 Si 0.812 3.188 26 H -0.190 1.190 27 H -0.200 1.200 28 H -0.185 1.185 29 H 0.158 0.842 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.149 0.851 33 H 0.171 0.829 34 H 0.180 0.820 35 H 0.164 0.836 36 H 0.104 0.896 37 H 0.143 0.857 38 H 0.129 0.871 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.044 0.956 43 H 0.052 0.948 44 H -0.005 1.005 45 H -0.012 1.012 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.271 -23.632 -13.701 28.268 hybrid contribution -0.477 0.671 0.209 0.849 sum 6.794 -22.962 -13.492 27.485 Atomic orbital electron populations 1.23539 0.74926 1.05818 1.02177 1.86489 1.24765 1.32123 1.84001 1.23739 0.91931 0.81515 0.71680 1.90694 1.67383 1.37540 1.44611 1.20183 0.87945 0.95979 0.93156 0.84324 1.20234 0.97174 1.04536 0.95730 1.21340 0.99433 0.97431 0.93849 1.21412 0.97609 1.00743 0.95393 1.21458 0.93689 0.94501 1.00481 1.21295 1.02105 1.01657 0.91342 1.18650 0.89862 0.93320 0.91118 1.86159 1.68827 1.41143 1.29089 1.23901 1.00435 0.98868 0.81121 1.23127 0.85849 1.04202 0.96819 1.61687 1.31003 1.02545 1.29731 1.22508 0.99453 0.89581 0.93068 1.22709 0.98625 0.94786 0.85742 1.87773 1.53354 1.52852 1.37159 1.19733 0.89028 0.83963 0.93568 1.21364 1.12539 1.18780 1.05335 0.91653 1.26092 0.94939 0.95767 1.02861 1.70114 1.20128 1.25987 1.41238 0.85090 0.78077 0.78715 0.76923 1.18996 1.19963 1.18549 0.84165 0.93064 0.92068 0.85116 0.82855 0.82039 0.83633 0.89644 0.85658 0.87112 0.90255 0.89132 0.90628 0.95622 0.94813 1.00494 1.01212 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.73 16 2 O -0.36 -8.35 9.33 -51.39 -0.48 -8.83 16 3 C 0.47 14.16 5.90 71.23 0.42 14.58 16 4 O -0.52 -20.33 14.00 21.97 0.31 -20.02 16 5 C 0.14 3.61 2.28 43.47 0.10 3.71 16 6 H 0.14 2.82 7.67 -2.39 -0.02 2.81 16 7 C -0.17 -4.06 4.01 -19.74 -0.08 -4.14 16 8 C -0.10 -2.02 9.06 22.34 0.20 -1.82 16 9 C -0.13 -2.01 10.04 22.23 0.22 -1.78 16 10 C -0.08 -1.17 10.05 22.22 0.22 -0.95 16 11 C -0.15 -2.64 9.94 22.42 0.22 -2.41 16 12 C 0.11 2.61 4.36 22.47 0.10 2.71 16 13 O -0.34 -8.21 6.78 -90.34 -0.61 -8.82 16 14 C 0.03 0.61 6.47 71.96 0.47 1.08 16 15 C 0.03 0.70 5.78 86.20 0.50 1.20 16 16 N -0.53 -17.25 4.14 -879.24 -3.64 -20.90 16 17 C 0.08 2.97 3.40 86.30 0.29 3.26 16 18 C 0.06 2.80 6.22 71.98 0.45 3.25 16 19 O -0.39 -21.84 10.26 -148.98 -1.53 -23.37 16 20 C 0.21 13.43 5.69 71.23 0.41 13.84 16 21 C -0.54 -34.65 9.43 25.60 0.24 -34.41 16 22 H 0.07 4.06 7.81 -2.91 -0.02 4.04 16 23 C 0.00 0.07 5.46 84.65 0.46 0.53 16 24 N -0.94 -59.95 13.29 21.45 0.28 -59.67 16 25 Si 0.99 46.45 29.54 68.60 2.03 48.47 16 26 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 28 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 29 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 31 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.13 2.49 5.93 -2.92 -0.02 2.47 16 33 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.09 1.24 7.79 -2.39 -0.02 1.22 16 37 H 0.13 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.11 2.25 8.04 -2.39 -0.02 2.23 16 39 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 40 H 0.09 3.32 5.57 -2.39 -0.01 3.30 16 41 H 0.08 2.66 4.95 -2.39 -0.01 2.65 16 42 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.03 1.74 6.21 -2.39 -0.01 1.72 16 44 H -0.02 -1.49 8.14 -2.39 -0.02 -1.51 16 45 H -0.03 -2.03 8.14 -2.39 -0.02 -2.05 16 46 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -83.31 368.86 2.76 -80.55 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.99 Total: 12.21 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 5.42 Total: 0.38 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -3.36 Total: -80.57 kcal Atomic # 8 Polarization: -58.73 SS G_CDS: -2.31 Total: -61.04 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -83.31 2.76 -80.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932751012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.532 kcal (2) G-P(sol) polarization free energy of solvation -83.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds