Wall clock time and date at job start Tue Mar 31 2020 18:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36936 * 119.99428 * 2 1 4 4 H 1.08005 * 119.99263 * 139.65690 * 3 2 1 5 5 C 1.38804 * 120.00632 * 319.64673 * 3 2 1 6 6 N 1.31616 * 120.00011 * 159.48866 * 5 3 2 7 7 Si 1.86799 * 120.00108 * 339.48971 * 5 3 2 8 8 H 1.48500 * 109.46892 * 95.50135 * 7 5 3 9 9 H 1.48494 * 109.47543 * 215.49984 * 7 5 3 10 10 H 1.48501 * 109.47342 * 335.50432 * 7 5 3 11 11 C 1.46489 * 119.99797 * 180.02562 * 2 1 3 12 12 H 1.08998 * 110.91433 * 177.55150 * 11 2 1 13 13 C 1.55159 * 111.00972 * 53.64788 * 11 2 1 14 14 C 1.54320 * 102.94408 * 206.42259 * 13 11 2 15 15 N 1.47020 * 107.27163 * 22.19574 * 14 13 11 16 16 C 1.34779 * 125.64553 * 181.03801 * 15 14 13 17 17 O 1.21688 * 119.99686 * 174.71503 * 16 15 14 18 18 C 1.46680 * 120.00127 * 354.71575 * 16 15 14 19 19 C 1.35658 * 126.12954 * 185.10475 * 18 16 15 20 20 N 1.30946 * 114.19123 * 179.78514 * 19 18 16 21 21 C 1.29428 * 117.36429 * 0.52904 * 20 19 18 22 22 C 1.50698 * 124.80692 * 179.68504 * 21 20 19 23 23 C 1.53002 * 109.46909 * 90.02408 * 22 21 20 24 24 C 1.53004 * 117.49990 * 243.74474 * 23 22 21 25 25 C 1.53000 * 117.49699 * 175.08576 * 23 22 21 26 26 S 1.70957 * 110.38867 * 359.70813 * 21 20 19 27 27 C 1.47417 * 108.70465 * 1.05222 * 15 14 13 28 28 H 1.08999 * 109.46779 * 265.62567 * 1 2 3 29 29 H 1.09004 * 109.47070 * 25.62653 * 1 2 3 30 30 H 1.08996 * 109.47331 * 145.62448 * 1 2 3 31 31 H 0.97002 * 120.00309 * 180.02562 * 6 5 3 32 32 H 1.09005 * 110.71712 * 88.05734 * 13 11 2 33 33 H 1.09000 * 110.86776 * 324.86366 * 13 11 2 34 34 H 1.09001 * 109.88195 * 262.76863 * 14 13 11 35 35 H 1.09000 * 110.01035 * 141.68259 * 14 13 11 36 36 H 1.08006 * 122.90674 * 359.97125 * 19 18 16 37 37 H 1.08998 * 109.47081 * 210.01993 * 22 21 20 38 38 H 1.08995 * 109.47291 * 330.02644 * 22 21 20 39 39 H 1.09005 * 115.55286 * 29.42041 * 23 22 21 40 40 H 1.09006 * 117.49439 * 0.02562 * 24 23 22 41 41 H 1.08997 * 117.50014 * 145.01955 * 24 23 22 42 42 H 1.08997 * 117.50039 * 214.97889 * 25 23 22 43 43 H 1.09000 * 117.49855 * 0.02562 * 25 23 22 44 44 H 1.09011 * 110.36612 * 94.71045 * 27 15 14 45 45 H 1.08996 * 110.37262 * 217.03301 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0370 1.2971 0.6056 5 6 1.7033 2.2451 -0.7783 6 7 2.0823 3.4738 -0.4972 7 14 0.5648 1.9266 -2.2246 8 1 -0.8440 2.1230 -1.7981 9 1 0.8853 2.8715 -3.3244 10 1 0.7479 0.5320 -2.7010 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0970 -0.0440 13 6 1.7321 -2.1792 -1.1675 14 6 2.0381 -3.5976 -0.6424 15 7 2.0991 -3.5164 0.8242 16 6 2.3644 -4.5422 1.6573 17 8 2.4844 -4.3407 2.8514 18 6 2.5086 -5.9012 1.1247 19 6 2.6777 -7.0324 1.8541 20 7 2.7768 -8.1235 1.1369 21 6 2.7142 -7.9975 -0.1497 22 6 2.8157 -9.1363 -1.1315 23 6 1.4189 -9.6942 -1.4116 24 6 1.1387 -11.1394 -0.9946 25 6 1.2947 -10.7863 -2.4758 26 16 2.5008 -6.3562 -0.5777 27 6 1.8217 -2.1274 1.2328 28 1 -0.3633 -0.0784 1.0247 29 1 -0.3633 0.9266 -0.4445 30 1 -0.3634 -0.8481 -0.5802 31 1 1.7701 4.2140 -1.0409 32 1 2.3046 -1.9706 -2.0713 33 1 0.6647 -2.0582 -1.3525 34 1 2.9957 -3.9397 -1.0351 35 1 1.2475 -4.2852 -0.9430 36 1 2.7236 -7.0334 2.9332 37 1 3.2563 -8.7762 -2.0612 38 1 3.4436 -9.9225 -0.7124 39 1 0.6011 -8.9784 -1.3272 40 1 1.9494 -11.6925 -0.5203 41 1 0.1365 -11.3745 -0.6361 42 1 0.3952 -10.7894 -3.0913 43 1 2.2083 -11.1077 -2.9762 44 1 0.7650 -2.0061 1.4716 45 1 2.4388 -1.8531 2.0883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971998118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:22 Heat of formation + Delta-G solvation = 68.689673 kcal Electronic energy + Delta-G solvation = -26097.445111 eV Core-core repulsion = 22436.722856 eV Total energy + Delta-G solvation = -3660.722255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.36027 -39.63074 -37.94002 -37.48633 -35.08629 -32.34578 -31.83725 -30.42729 -29.28497 -28.12952 -26.27219 -25.07729 -23.75691 -22.79874 -22.62177 -21.40653 -21.14442 -19.56034 -18.91548 -18.47660 -17.17384 -16.66317 -16.40333 -16.15066 -15.56345 -15.48204 -15.06136 -14.73399 -14.39612 -13.89563 -13.84220 -13.66562 -13.42713 -13.23691 -13.07649 -12.67352 -12.57157 -12.28471 -12.17870 -12.02344 -11.94077 -11.86256 -11.48921 -11.08823 -10.89108 -10.86393 -10.60727 -10.45818 -10.34007 -10.14767 -10.05352 -9.78801 -9.71360 -9.64942 -9.19182 -8.68180 -8.51686 -6.92883 -6.09290 -3.57650 0.03936 0.94908 1.37704 2.28161 2.91780 3.11703 3.23917 3.31949 3.38654 3.42717 3.69477 4.28947 4.41511 4.42301 4.44452 4.52448 4.65288 4.69272 4.97602 4.98577 5.06514 5.11263 5.16525 5.18762 5.19406 5.24409 5.32752 5.48035 5.53163 5.62308 5.68641 5.74790 5.77324 5.87342 5.98846 6.10407 6.23151 6.30878 6.33559 6.55175 6.61171 6.71629 7.36814 7.50071 7.94202 8.05950 8.29089 8.84664 9.57665 9.97068 11.05305 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.002587 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.731913 B =10822.521952 C =11761.354472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.594 5.594 3 C -0.277 4.277 4 H 0.080 0.920 5 C 0.039 3.961 6 N -0.896 5.896 7 Si 0.885 3.115 8 H -0.286 1.286 9 H -0.301 1.301 10 H -0.267 1.267 11 C 0.172 3.828 12 H 0.091 0.909 13 C -0.152 4.152 14 C 0.091 3.909 15 N -0.608 5.608 16 C 0.606 3.394 17 O -0.529 6.529 18 C -0.284 4.284 19 C 0.115 3.885 20 N -0.476 5.476 21 C 0.041 3.959 22 C -0.015 4.015 23 C -0.151 4.151 24 C -0.173 4.173 25 C -0.175 4.175 26 S 0.187 5.813 27 C 0.089 3.911 28 H 0.019 0.981 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.265 0.735 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.187 0.813 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.070 0.930 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.001 -26.841 -5.600 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.315 5.315 3 C -0.406 4.406 4 H 0.098 0.902 5 C -0.163 4.163 6 N -0.536 5.536 7 Si 0.714 3.286 8 H -0.214 1.214 9 H -0.229 1.229 10 H -0.192 1.192 11 C 0.063 3.937 12 H 0.109 0.891 13 C -0.192 4.192 14 C -0.034 4.034 15 N -0.341 5.341 16 C 0.393 3.607 17 O -0.408 6.408 18 C -0.409 4.409 19 C -0.042 4.042 20 N -0.190 5.190 21 C -0.233 4.233 22 C -0.056 4.056 23 C -0.171 4.171 24 C -0.210 4.210 25 C -0.213 4.213 26 S 0.445 5.555 27 C -0.034 4.034 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.204 0.796 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.948 -26.558 -5.730 27.186 hybrid contribution -0.744 -0.079 0.084 0.753 sum -1.693 -26.638 -5.646 27.282 Atomic orbital electron populations 1.21380 0.84763 0.99373 0.98367 1.43924 1.00542 1.01234 1.85831 1.18769 1.11872 0.87379 1.22542 0.90212 1.25555 0.97961 0.95266 0.97474 1.69851 1.46432 0.98293 1.39030 0.86807 0.80032 0.78122 0.83606 1.21404 1.22873 1.19159 1.21622 0.97250 0.85292 0.89572 0.89136 1.23234 1.03043 0.91979 1.00959 1.22195 1.01201 0.99748 0.80252 1.48295 1.68832 1.09907 1.07042 1.16315 0.77337 0.81723 0.85374 1.90846 1.51699 1.83789 1.14467 1.25798 1.18975 0.99716 0.96360 1.22152 0.95668 0.84561 1.01864 1.66246 1.16914 1.31454 1.04353 1.27576 1.01231 0.99823 0.94681 1.19882 0.96636 0.93638 0.95421 1.22182 0.97274 0.92525 1.05140 1.23065 1.03270 0.97244 0.97412 1.23029 1.03605 1.02579 0.92046 1.84289 1.64524 1.01124 1.05551 1.22996 1.01431 0.78361 1.00653 0.96311 0.93142 0.95028 0.92509 0.89824 0.90319 0.91100 0.91433 0.79611 0.88923 0.88496 0.87590 0.88407 0.88729 0.88485 0.88449 0.91146 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.16 8.33 59.85 0.50 2.66 16 2 N -0.59 -13.20 2.47 -171.03 -0.42 -13.63 16 3 C -0.28 -7.40 9.85 -15.06 -0.15 -7.55 16 4 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 5 C 0.04 1.08 5.29 -17.43 -0.09 0.99 16 6 N -0.90 -26.52 13.97 55.49 0.78 -25.74 16 7 Si 0.88 21.13 25.05 -169.99 -4.26 16.87 16 8 H -0.29 -6.70 6.72 56.52 0.38 -6.33 16 9 H -0.30 -7.36 7.11 56.52 0.40 -6.95 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 C 0.17 3.15 3.54 -65.78 -0.23 2.91 16 12 H 0.09 1.71 7.96 -51.93 -0.41 1.30 16 13 C -0.15 -2.26 6.50 -24.90 -0.16 -2.42 16 14 C 0.09 1.14 5.20 -3.07 -0.02 1.13 16 15 N -0.61 -9.31 3.33 -172.06 -0.57 -9.88 16 16 C 0.61 9.70 7.81 -12.85 -0.10 9.60 16 17 O -0.53 -10.14 17.10 5.20 0.09 -10.05 16 18 C -0.28 -3.73 6.40 -37.10 -0.24 -3.97 16 19 C 0.12 1.45 11.09 -18.85 -0.21 1.24 16 20 N -0.48 -5.65 10.51 -11.50 -0.12 -5.77 16 21 C 0.04 0.40 6.59 -13.29 -0.09 0.31 16 22 C -0.02 -0.10 6.07 -27.88 -0.17 -0.27 16 23 C -0.15 -0.99 5.72 -90.62 -0.52 -1.51 16 24 C -0.17 -1.05 10.18 -26.69 -0.27 -1.32 16 25 C -0.18 -0.90 10.25 -26.69 -0.27 -1.17 16 26 S 0.19 1.82 18.68 -107.50 -2.01 -0.18 16 27 C 0.09 1.54 6.53 -2.53 -0.02 1.52 16 28 H 0.02 0.37 7.93 -51.93 -0.41 -0.04 16 29 H 0.05 1.12 3.74 -51.93 -0.19 0.93 16 30 H 0.03 0.56 6.02 -51.93 -0.31 0.24 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.08 1.19 6.02 -51.93 -0.31 0.87 16 34 H 0.07 0.79 7.08 -51.93 -0.37 0.43 16 35 H 0.07 0.74 6.83 -51.93 -0.35 0.39 16 36 H 0.19 2.19 8.06 -52.48 -0.42 1.76 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.10 0.63 7.87 -51.93 -0.41 0.22 16 39 H 0.11 0.76 8.07 -51.93 -0.42 0.35 16 40 H 0.10 0.56 8.03 -51.93 -0.42 0.15 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 1.23 7.11 -51.92 -0.37 0.86 16 45 H 0.08 1.51 7.99 -51.93 -0.41 1.09 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -31.64 371.20 -9.47 -41.12 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.51 Total: -0.48 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -2.04 Total: 2.15 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.34 Total: -55.02 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.26 Total: 16.87 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.01 Total: -0.18 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.64 -9.47 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971998118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.806 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds